NO14G02390.1, NO14G02390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02390.1
Unique NameNO14G02390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2294
Alignment locationchr14:709173..712036 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:709173..712036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G02390.1 vs.
Match: EWM24570.1 (e3 ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 425.2 bits (1092), Expect = 2.700e-115
Identity = 241/339 (71.09%), Postives = 264/339 (77.88%), Query Frame = 0 
Query:  164 MFLYVSSVSALYYLNGRGPNVSVSGSLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEVCPHPNRSPLYSLCVAFVFINYAQLCLPCVVVIVMLPVLCFCLPCLIRILARIQDPMRGKGATPTMISKLPLMKYRQVQEEQFRTGTAAGATANAGGAAGTEGGVGRGQGHEQQPQLSVTGVESNSTSCAICISEYAPDEDVRLLPCEHYFHASCVDEWLKVNASCPTCRASILPEHADQSTPRSSHYGTTTSA--GASSSSISSVGSAGNSPGG-GLGGNLPVAISPPSSISPSGSIPM-PGTPMHGGGREGGREGGRSSQSHHQR--------GDHLV 491
            MFLYVSSVSALY LNGR P  +    LMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVE+CPHPNRSP+YSLCVAFVFINYAQLCLPCVVVI+MLPVLCFCLPCLIRILARIQDPMRGKGATP+MI+KLP+MKYRQ+Q E+        ATA+AG   G +      QG EQ  Q+SVTGVESNSTSCA+CISEYAPDEDVRLLPC HYFHASCVDEWLKVNASCPTCRASILPE A+Q TPRSSHYGTT++   G+S+S+  S GS GNSPGG G G   P+  SP S  S S +IP  PGTP  GG   GGR   +  Q   Q+        GDHLV
Sbjct:    1 MFLYVSSVSALYRLNGRMPATT---RLMRFLSHARNGLDAFGLIWFVVGNMWLFGGDVEICPHPNRSPVYSLCVAFVFINYAQLCLPCVVVIIMLPVLCFCLPCLIRILARIQDPMRGKGATPSMINKLPMMKYRQIQAEK-------AATASAGSLEG-QAAPPASQGGEQDTQVSVTGVESNSTSCAVCISEYAPDEDVRLLPCAHYFHASCVDEWLKVNASCPTCRASILPESAEQPTPRSSHYGTTSAGVLGSSASTSLSGGSTGNSPGGAGQGTIHPLTTSPLS--SASSAIPTHPGTPHRGGSLAGGRASQQQHQVQQQQQQSSRRSTGDHLV 326
The following BLAST results are available for this feature:
BLAST of NO14G02390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24570.12.700e-11571.09e3 ubiquitin-protein ligase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02390NO14G02390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02390.1NO14G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02390.1.cds1NO14G02390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02390.1.cds2NO14G02390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G02390.1.cds3NO14G02390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02390.1 ID=NO14G02390.1|Name=NO14G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp
ACAGCGCTTTACCGTCGCATGCTCGCTGGAGGCCCGAACAGCCAGCAGCT
GAGCGCCACATAAGCAGCAAGAGGGGCCAGTAAGGAGCTTGAGCAGGAGC
GACTGCTGCTGCTACGCCCCCTCCTACCCTACCCTGAAAAGGAAGACGAC
GCATAGTTCACGGCGCGTGGACACCCACACTCAGGTCAGCCATTGCGTCG
AGGGCTGACCGCGACGCGCCTGGGCCGTTGCAAGCGGTGGAAATGAGCTA
CGTGCCCATGTCCAGGGCATCCCACTCGGGAAGCACCGGCGGTGTGGGGG
GCAGCATGACAGGCAACAGCAGCAGCAGTGGTGGACAGACCCAATTAGAA
ATGGATGAGGCGCTAGCCCGACAGCTGCAACGAGCTGAGCTGGACGGGAT
CAGCACTCCCTTAATTTTAGGAGGAGGGCCGGGTGGTGGGGGAGGAGGTG
GGTCGGGAGTGGGTGGGAGTGGCGGAGTAGGAGGAGGCGGCGGTGGGGGG
GGGGGAGGGCGGGAAGGCCCTATCGACGAAGCCAGACAAACGCGGTTGAA
CGCGTTGCAGAATGTGCGAGAGGTTCGGAGTGCGAGCTTTGCGTTGTGCA
TTGTATTGTTGGTGAACATTCCCCAGATCATCGCGGCGATTGTGATCTTG
TCCAAGTACTGGTACGATGACACGTGTGTGGCAACCGAGACGGCGAAGTG
GAAGACTTACGCCTTGATTGCGGCGATGCGTATGTTTTTGTACGTGTCCT
CCGTGTCAGCGCTGTATTATTTGAACGGACGGGGGCCGAATGTCAGTGTG
AGTGGGTCGTTGATGCGGTTTTTGAGCCATGCAAGGAACGGACTAGATGC
GTTTGGACTGATCTGGTTTGTGGTTGGAAATATGTGGTTATTCGGAGGGG
ACGTGGAGGTTTGCCCCCACCCCAACCGGAGCCCGCTGTACAGCTTGTGT
GTAGCCTTTGTCTTCATCAATTATGCTCAGCTGTGCCTGCCCTGCGTGGT
GGTGATCGTGATGTTGCCAGTTTTGTGCTTTTGCTTGCCGTGCCTAATTC
GAATTTTGGCGCGAATCCAAGACCCGATGCGAGGAAAGGGCGCAACGCCC
ACAATGATCAGTAAGCTACCACTCATGAAATACCGGCAAGTCCAAGAGGA
GCAATTTAGAACAGGAACAGCAGCAGGAGCAACGGCAAACGCGGGAGGTG
CAGCAGGGACAGAGGGAGGGGTAGGAAGAGGGCAGGGGCATGAACAGCAG
CCGCAGTTGTCAGTGACGGGGGTTGAGAGTAACAGCACGTCGTGCGCAAT
TTGTATCAGTGAATACGCGCCGGACGAGGACGTGAGACTATTACCATGTG
AACACTATTTCCATGCTTCGTGCGTCGACGAGTGGCTTAAGGTTAATGCC
TCCTGCCCCACTTGCCGTGCCTCCATCCTCCCCGAACATGCCGACCAATC
CACACCCCGTTCTTCCCACTATGGCACCACAACTTCAGCTGGAGCCAGCA
GCAGCAGTATCAGTAGCGTTGGCAGCGCAGGGAACAGCCCGGGAGGAGGT
CTGGGAGGAAATCTTCCTGTTGCGATCTCCCCCCCGTCCTCTATCTCGCC
AAGTGGCTCAATTCCGATGCCTGGCACGCCGATGCATGGTGGGGGAAGGG
AGGGAGGGAGGGAGGGCGGGCGTTCATCGCAGTCGCATCACCAACGAGGG
GATCATTTAGTGTAGACGGACGGAGAAAGCGAAAACGGACAAGACAAATG
GGGTCAGAAATGTGTCTTGCAACGAGATGGGCAATTGGACGAGCTGCAGT
ATCATTACAGACACGTAGAAGAAGAGGAAGGAGGGCGGAAGGATGCATCC
TTTCTACCCCTTTCTTTGGTCGGTTGGCCTTTCGTGTGTGTTTCATGTGT
CTTATTGCATGTGGTCGTGGCTGTGAGCTTTTGTTTGAGTAGGTAGCGGT
GGTATGTACAGGCCACTCTCGGGGAAAGAGGTGGAAGGGAACGATGGAGA
GAGAGACGCGATGCGATGGAAGGGGAGCGTTAGGTCCCCTCCCTTTTTGG
GAAAGACATGATAAGAATCAAAAATATCAGAGACAGAACAACGACGAGGA
GATATATACAGAAGAGAGGAAGAAGGAATAAGAGGAGACGCGCGTGCGCT
CTTACTCGAAAAAGAAAATTTGGGATTTGAAAAGAGAAAAATATAGGAAT
AATAGTAGTATGTAGTAGCCTTTTTCTTTGTGTTGCTTCATCCGGGAGAC
ACTGCCGAAAATTCTGGCAAGAAAAAAACTTCTGGTTTAGGACG
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protein sequence of NO14G02390.1

>NO14G02390.1-protein ID=NO14G02390.1-protein|Name=NO14G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MSYVPMSRASHSGSTGGVGGSMTGNSSSSGGQTQLEMDEALARQLQRAEL
DGISTPLILGGGPGGGGGGGSGVGGSGGVGGGGGGGGGGREGPIDEARQT
RLNALQNVREVRSASFALCIVLLVNIPQIIAAIVILSKYWYDDTCVATET
AKWKTYALIAAMRMFLYVSSVSALYYLNGRGPNVSVSGSLMRFLSHARNG
LDAFGLIWFVVGNMWLFGGDVEVCPHPNRSPLYSLCVAFVFINYAQLCLP
CVVVIVMLPVLCFCLPCLIRILARIQDPMRGKGATPTMISKLPLMKYRQV
QEEQFRTGTAAGATANAGGAAGTEGGVGRGQGHEQQPQLSVTGVESNSTS
CAICISEYAPDEDVRLLPCEHYFHASCVDEWLKVNASCPTCRASILPEHA
DQSTPRSSHYGTTTSAGASSSSISSVGSAGNSPGGGLGGNLPVAISPPSS
ISPSGSIPMPGTPMHGGGREGGREGGRSSQSHHQRGDHLV*
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mRNA from alignment at chr14:709173..712036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02390.1 ID=NO14G02390.1|Name=NO14G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=2864bp|location=Sequence derived from alignment at chr14:709173..712036- (Nannochloropsis oceanica)
ACAGCGCTTTACCGTCGCATGCTCGCTGGAGGCCCGAACAGCCAGCAGCT
GAGCGCCACATAAGCAGCAAGAGGGGCCAGTAAGGAGCTTGAGCAGGAGC
GACTGCTGCTGCTACGCCCCCTCCTACCCTACCCTGAAAAGGAAGACGAC
GCATAGTTCACGGCGCGTGGACACCCACACTCAGGTATGTGAGAGAGGGA
GGTGGAGAAGGAGAAGCAGGAGGGTATAGAGGGGATGAAGTAGCTATCTT
GGCACGGGTGTTTCGGAAGGAGAGTCGACTGAAACGGGAGGGGACGTGGC
GGAAGAGAAGGAGGGCATTCATGAGAAAAGGGCAGGCAACCCGAGGCCTT
CTAAGAAACGGAGATATAAATATAAGAACAGGGATCATCTTCCGTTTGAC
CCTATCGACACAAGAATCTATCGATTCTCAACCTTATTTTAAACCCAACT
AATTGATCCCCTCTCTCCGCACTCGTTCTCCTTCCATTCCCGTCCACAGG
TCAGCCATTGCGTCGAGGGCTGACCGCGACGCGCCTGGGCCGTTGCAAGC
GGTGGAAATGAGCTACGTGCCCATGTCCAGGGCATCCCACTCGGTAGGTA
GTGAATGAGGGAGGGAGCGAGGGAAGGGAGGGATGAAGCGAGGTAAGGTG
TATATCTGTCCTACCATGTCTCCTCTTTATCCACGCCCCAATGCATGCTC
ATCACCCATTTCCCCCTCATCTTCAATCTACTCTCATTGTTATTTATCAG
GGAAGCACCGGCGGTGTGGGGGGCAGCATGACAGGCAACAGCAGCAGCAG
TGGTGGACAGACCCAATTAGAAATGGATGAGGCGCTAGCCCGACAGCTGC
AACGAGCTGAGCTGGACGGGATCAGCACTCCCTTAATTTTAGGAGGAGGG
CCGGGTGGTGGGGGAGGAGGTGGGTCGGGAGTGGGTGGGAGTGGCGGAGT
AGGAGGAGGCGGCGGTGGGGGGGGGGGAGGGCGGGAAGGCCCTATCGACG
AAGCCAGACAAACGCGGTTGAACGCGTTGCAGAATGTGCGAGAGGTTCGG
AGTGCGAGCTTTGCGTTGTGCATTGTATTGTTGGTGAACATTCCCCAGAT
CATCGCGGCGATTGTGATCTTGTCCAAGTACTGGTACGATGACACGTGTG
TGGCAACCGAGACGGCGAAGTGGAAGACTTACGCCTTGATTGCGGCGATG
CGTATGTTTTTGTACGTGTCCTCCGTGTCAGCGCTGTATTATTTGAACGG
ACGGGGGCCGAATGTCAGTGTGAGTGGGTCGTTGATGCGGTTTTTGAGCC
ATGCAAGGAACGGACTAGATGCGTTTGGACTGATCTGGTTTGTGGTTGGA
AATATGTGGTTATTCGGAGGGGACGTGGAGGTTTGCCCCCACCCCAACCG
GAGCCCGCTGTACAGCTTGTGTGTAGCCTTTGTCTTCATCAATTATGCTC
AGCTGTGCCTGCCCTGCGTGGTGGTGATCGTGATGTTGCCAGTTTTGTGC
TTTTGCTTGCCGTGCCTAATTCGAATTTTGGCGCGAATCCAAGACCCGAT
GCGAGGAAAGGGCGCAACGCCCACAATGATCAGTAAGCTACCACTCATGA
AATACCGGCAAGTCCAAGAGGAGCAATTTAGAACAGGAACAGCAGCAGGA
GCAACGGCAAACGCGGGAGGTGCAGCAGGGACAGAGGGAGGGGTAGGAAG
AGGGCAGGGGCATGAACAGCAGCCGCAGTTGTCAGTGACGGGGGTTGAGA
GTAACAGCACGTCGTGCGCAATTTGTATCAGTGAATACGCGCCGGACGAG
GACGTGAGACTATTACCATGTGAACACTATTTCCATGCTTCGGTAAGTGA
GCAAAAATGGTTTTTTTAATCGCTCCCCACCCGTTCTTACCCTCCTTCCC
TCCCTCCCTTCCATCCTCCCTCCCGCCCATTTTGAATCAGTGCGTCGACG
AGTGGCTTAAGGTTAATGCCTCCTGCCCCACTTGCCGTGCCTCCATCCTC
CCCGAACATGCCGACCAATCCACACCCCGTTCTTCCCACTATGGCACCAC
AACTTCAGCTGGAGCCAGCAGCAGCAGTATCAGTAGCGTTGGCAGCGCAG
GGAACAGCCCGGGAGGAGGTCTGGGAGGAAATCTTCCTGTTGCGATCTCC
CCCCCGTCCTCTATCTCGCCAAGTGGCTCAATTCCGATGCCTGGCACGCC
GATGCATGGTGGGGGAAGGGAGGGAGGGAGGGAGGGCGGGCGTTCATCGC
AGTCGCATCACCAACGAGGGGATCATTTAGTGTAGACGGACGGAGAAAGC
GAAAACGGACAAGACAAATGGGGTCAGAAATGTGTCTTGCAACGAGATGG
GCAATTGGACGAGCTGCAGTATCATTACAGACACGTAGAAGAAGAGGAAG
GAGGGCGGAAGGATGCATCCTTTCTACCCCTTTCTTTGGTCGGTTGGCCT
TTCGTGTGTGTTTCATGTGTCTTATTGCATGTGGTCGTGGCTGTGAGCTT
TTGTTTGAGTAGGTAGCGGTGGTATGTACAGGCCACTCTCGGGGAAAGAG
GTGGAAGGGAACGATGGAGAGAGAGACGCGATGCGATGGAAGGGGAGCGT
TAGGTCCCCTCCCTTTTTGGGAAAGACATGATAAGAATCAAAAATATCAG
AGACAGAACAACGACGAGGAGATATATACAGAAGAGAGGAAGAAGGAATA
AGAGGAGACGCGCGTGCGCTCTTACTCGAAAAAGAAAATTTGGGATTTGA
AAAGAGAAAAATATAGGAATAATAGTAGTATGTAGTAGCCTTTTTCTTTG
TGTTGCTTCATCCGGGAGACACTGCCGAAAATTCTGGCAAGAAAAAAACT
TCTGGTTTAGGACG
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Coding sequence (CDS) from alignment at chr14:709173..712036-

>NO14G02390.1 ID=NO14G02390.1|Name=NO14G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr14:709173..712036- (Nannochloropsis oceanica)
ATGAGCTACGTGCCCATGTCCAGGGCATCCCACTCGGGAAGCACCGGCGG
TGTGGGGGGCAGCATGACAGGCAACAGCAGCAGCAGTGGTGGACAGACCC
AATTAGAAATGGATGAGGCGCTAGCCCGACAGCTGCAACGAGCTGAGCTG
GACGGGATCAGCACTCCCTTAATTTTAGGAGGAGGGCCGGGTGGTGGGGG
AGGAGGTGGGTCGGGAGTGGGTGGGAGTGGCGGAGTAGGAGGAGGCGGCG
GTGGGGGGGGGGGAGGGCGGGAAGGCCCTATCGACGAAGCCAGACAAACG
CGGTTGAACGCGTTGCAGAATGTGCGAGAGGTTCGGAGTGCGAGCTTTGC
GTTGTGCATTGTATTGTTGGTGAACATTCCCCAGATCATCGCGGCGATTG
TGATCTTGTCCAAGTACTGGTACGATGACACGTGTGTGGCAACCGAGACG
GCGAAGTGGAAGACTTACGCCTTGATTGCGGCGATGCGTATGTTTTTGTA
CGTGTCCTCCGTGTCAGCGCTGTATTATTTGAACGGACGGGGGCCGAATG
TCAGTGTGAGTGGGTCGTTGATGCGGTTTTTGAGCCATGCAAGGAACGGA
CTAGATGCGTTTGGACTGATCTGGTTTGTGGTTGGAAATATGTGGTTATT
CGGAGGGGACGTGGAGGTTTGCCCCCACCCCAACCGGAGCCCGCTGTACA
GCTTGTGTGTAGCCTTTGTCTTCATCAATTATGCTCAGCTGTGCCTGCCC
TGCGTGGTGGTGATCGTGATGTTGCCAGTTTTGTGCTTTTGCTTGCCGTG
CCTAATTCGAATTTTGGCGCGAATCCAAGACCCGATGCGAGGAAAGGGCG
CAACGCCCACAATGATCAGTAAGCTACCACTCATGAAATACCGGCAAGTC
CAAGAGGAGCAATTTAGAACAGGAACAGCAGCAGGAGCAACGGCAAACGC
GGGAGGTGCAGCAGGGACAGAGGGAGGGGTAGGAAGAGGGCAGGGGCATG
AACAGCAGCCGCAGTTGTCAGTGACGGGGGTTGAGAGTAACAGCACGTCG
TGCGCAATTTGTATCAGTGAATACGCGCCGGACGAGGACGTGAGACTATT
ACCATGTGAACACTATTTCCATGCTTCGTGCGTCGACGAGTGGCTTAAGG
TTAATGCCTCCTGCCCCACTTGCCGTGCCTCCATCCTCCCCGAACATGCC
GACCAATCCACACCCCGTTCTTCCCACTATGGCACCACAACTTCAGCTGG
AGCCAGCAGCAGCAGTATCAGTAGCGTTGGCAGCGCAGGGAACAGCCCGG
GAGGAGGTCTGGGAGGAAATCTTCCTGTTGCGATCTCCCCCCCGTCCTCT
ATCTCGCCAAGTGGCTCAATTCCGATGCCTGGCACGCCGATGCATGGTGG
GGGAAGGGAGGGAGGGAGGGAGGGCGGGCGTTCATCGCAGTCGCATCACC
AACGAGGGGATCATTTAGTGTAG
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Synonyms
Publications