NO14G02360.1, NO14G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G02360.1
Unique NameNO14G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1618
Alignment locationchr14:702602..704219 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:702602..704219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO14G02360.1 vs.
Match: XP_008917000.1 (hypothetical protein PPTG_24854 [Phytophthora parasitica INRA-310]; ETM97702.1 hypothetical protein PPTG_24854 [Phytophthora parasitica INRA-310])

HSP 1 Score: 79.7 bits (195), Expect = 8.900e-12
Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 0 
Query:    4 DSRIEKRLAGFCGQEGRDYKLFVDPAFGALRFISKPFRHTVATEVESIR--NTRISRVRVTVEQTIGHITQQLSAVVFVRTERVGDGDVCKRNLVGCFLRNVWTCVRGGNQILEFFGWCPPTLEYFLEER 132
            DS+I +R+        + YK++ D A+G    ++ P+   V       R  N  +SRVRV+VE + G +T   +A+ F R  RVG   V     VG FL N  TC +GGN I ++FG  PP+L  +L  R
Sbjct:  164 DSKISERIRN--DSRFQQYKIYGDQAYGNDDVLTSPYAGAVGNRSREQRQVNVSMSRVRVSVEWSYGQVTNYWTALDFKRQARVGIQPVGLMYRVGVFLTNCITCTQGGNTISDYFGLAPPSLSVYLNTR 291
The following BLAST results are available for this feature:
BLAST of NO14G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008917000.18.900e-1236.15hypothetical protein PPTG_24854 [Phytophthora para... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02360NO14G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G02360.1NO14G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G02360.1.cds1NO14G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G02360.1 ID=NO14G02360.1|Name=NO14G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1618bp
AATTCAAGAAAAGAAGGGGAGTGTTGTGGGTGGGGGAGGGGGTAATTTTG
GTGGGGTTGTGCACGGCTTTAAGTATCTGATCATCCCTCTCCCGTCGGTC
TGGTGGAGGAAGACGCTGGACCCTACCCTGGCCGCATTTCCGACAGCGCT
ATGGTTTTGGATTCGCGCATCGAGAAGCGCTTGGCTGGCTTTTGTGGCCA
GGAGGGGCGGGATTACAAATTATTTGTGGACCCAGCTTTCGGTGCTTTGC
GTTTCATCTCGAAGCCATTCAGGCACACTGTAGCGACGGAGGTTGAGTCC
ATCAGAAACACGCGCATTTCGCGCGTGCGCGTGACTGTGGAGCAAACAAT
AGGGCACATTACGCAGCAGCTTTCGGCCGTTGTTTTCGTACGAACAGAGC
GTGTCGGCGACGGGGATGTGTGCAAGAGAAACCTCGTCGGTTGCTTCTTG
CGCAACGTTTGGACGTGCGTGCGGGGAGGGAACCAAATCTTGGAGTTCTT
TGGGTGGTGCCCGCCGACACTTGAGTATTTTTTGGAAGAACGACAATTCC
GCGATCCTCTCCCACCCCGCCTGGAGCAAATGGGTGTCTTTCAACTACGG
ACATCAGAAGAACAAGAAGATGAGTGAGACAAAAGAAATTATTCGTACTA
CGTATGCGACATAACATTCGTGTTTCACTTCTTTCGTTTCATGCATCTAT
CGATCCTACACCTCGTCGTCGCCGGCACTGTACAGCTTCTCCCACCGCCT
CTTCATGAGGCGGGGGAGCGCGGCCGCAGTCAAATTAGAGTCCAGCATGA
GCTTATGGAGCTTCACCAATTGCTCCAGGTTCTCTTCATTTTTTTCTTCC
TATCCTCCTCCTCCCATTCCTCTTCTATCTTCTTACTTTCCACTTCAATC
GTCATTAAATTTAATATGGCTTCGATGGGCTCGGCTATCTTCATCTTCTC
GTCAATTGTCTTTTGACGCTTTATGAATACAGTCGCCATCGCCCTTTGTC
TCTTCCCCCGATCATTCCGCTTATGCACGCCGCCCCAGTCGGCGGTTGAG
ACACCCGACGATGACAGGGAGGCTTCGCAGTCTTCATCCTCCTCCGTCCC
ATACTCTTCATCCTATTCCTCCTTCTCCTCTTCCTCCTTCTCCTCGTTAT
CCCCCTTCCCCCCCACCTTATTCCTGAAACTGCTACGGAGGGAGTAAGTG
GGTGGGTGGGTGAATGTGTATGCGTGCTTGTGCGTGAGTGTGTGAGCGGG
TGGGTGAGTGACATCCCAAACACCACGATTTAACGTCTGAAAGACAATCA
CTTTCTTACCTGATGTACATATGTGGCTTTTTTATCGGTCTCCGCATCGC
TATGCCAACAGCAAGAGCCAGAAGGCGCCGCCGCCTACGGATCTGCTGTC
CGCGCGCCAGGCCATAGTGGAATCATCAAGGCGCCCGCGGCACGCTCCGT
TGGTTGCCGTTCGCCATTAGCCAAGCGCCGAGTAGAACGTGTGACCTCTT
CATGCTCCCGATTTAAATCCCTCTATTCCGTCTGGGCCATGGTTTGATCG
AAAATCACCATTTAATGGCCTTGTTGTACCTCCGCCGTTTTCTTAGTCCG
GAACGGTCTCTTTTCCGG
back to top

protein sequence of NO14G02360.1

>NO14G02360.1-protein ID=NO14G02360.1-protein|Name=NO14G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MVLDSRIEKRLAGFCGQEGRDYKLFVDPAFGALRFISKPFRHTVATEVES
IRNTRISRVRVTVEQTIGHITQQLSAVVFVRTERVGDGDVCKRNLVGCFL
RNVWTCVRGGNQILEFFGWCPPTLEYFLEERQFRDPLPPRLEQMGVFQLR
TSEEQEDE*
back to top

mRNA from alignment at chr14:702602..704219+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G02360.1 ID=NO14G02360.1|Name=NO14G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1618bp|location=Sequence derived from alignment at chr14:702602..704219+ (Nannochloropsis oceanica)
AATTCAAGAAAAGAAGGGGAGTGTTGTGGGTGGGGGAGGGGGTAATTTTG
GTGGGGTTGTGCACGGCTTTAAGTATCTGATCATCCCTCTCCCGTCGGTC
TGGTGGAGGAAGACGCTGGACCCTACCCTGGCCGCATTTCCGACAGCGCT
ATGGTTTTGGATTCGCGCATCGAGAAGCGCTTGGCTGGCTTTTGTGGCCA
GGAGGGGCGGGATTACAAATTATTTGTGGACCCAGCTTTCGGTGCTTTGC
GTTTCATCTCGAAGCCATTCAGGCACACTGTAGCGACGGAGGTTGAGTCC
ATCAGAAACACGCGCATTTCGCGCGTGCGCGTGACTGTGGAGCAAACAAT
AGGGCACATTACGCAGCAGCTTTCGGCCGTTGTTTTCGTACGAACAGAGC
GTGTCGGCGACGGGGATGTGTGCAAGAGAAACCTCGTCGGTTGCTTCTTG
CGCAACGTTTGGACGTGCGTGCGGGGAGGGAACCAAATCTTGGAGTTCTT
TGGGTGGTGCCCGCCGACACTTGAGTATTTTTTGGAAGAACGACAATTCC
GCGATCCTCTCCCACCCCGCCTGGAGCAAATGGGTGTCTTTCAACTACGG
ACATCAGAAGAACAAGAAGATGAGTGAGACAAAAGAAATTATTCGTACTA
CGTATGCGACATAACATTCGTGTTTCACTTCTTTCGTTTCATGCATCTAT
CGATCCTACACCTCGTCGTCGCCGGCACTGTACAGCTTCTCCCACCGCCT
CTTCATGAGGCGGGGGAGCGCGGCCGCAGTCAAATTAGAGTCCAGCATGA
GCTTATGGAGCTTCACCAATTGCTCCAGGTTCTCTTCATTTTTTTCTTCC
TATCCTCCTCCTCCCATTCCTCTTCTATCTTCTTACTTTCCACTTCAATC
GTCATTAAATTTAATATGGCTTCGATGGGCTCGGCTATCTTCATCTTCTC
GTCAATTGTCTTTTGACGCTTTATGAATACAGTCGCCATCGCCCTTTGTC
TCTTCCCCCGATCATTCCGCTTATGCACGCCGCCCCAGTCGGCGGTTGAG
ACACCCGACGATGACAGGGAGGCTTCGCAGTCTTCATCCTCCTCCGTCCC
ATACTCTTCATCCTATTCCTCCTTCTCCTCTTCCTCCTTCTCCTCGTTAT
CCCCCTTCCCCCCCACCTTATTCCTGAAACTGCTACGGAGGGAGTAAGTG
GGTGGGTGGGTGAATGTGTATGCGTGCTTGTGCGTGAGTGTGTGAGCGGG
TGGGTGAGTGACATCCCAAACACCACGATTTAACGTCTGAAAGACAATCA
CTTTCTTACCTGATGTACATATGTGGCTTTTTTATCGGTCTCCGCATCGC
TATGCCAACAGCAAGAGCCAGAAGGCGCCGCCGCCTACGGATCTGCTGTC
CGCGCGCCAGGCCATAGTGGAATCATCAAGGCGCCCGCGGCACGCTCCGT
TGGTTGCCGTTCGCCATTAGCCAAGCGCCGAGTAGAACGTGTGACCTCTT
CATGCTCCCGATTTAAATCCCTCTATTCCGTCTGGGCCATGGTTTGATCG
AAAATCACCATTTAATGGCCTTGTTGTACCTCCGCCGTTTTCTTAGTCCG
GAACGGTCTCTTTTCCGG
back to top

Coding sequence (CDS) from alignment at chr14:702602..704219+

>NO14G02360.1 ID=NO14G02360.1|Name=NO14G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr14:702602..704219+ (Nannochloropsis oceanica)
ATGGTTTTGGATTCGCGCATCGAGAAGCGCTTGGCTGGCTTTTGTGGCCA
GGAGGGGCGGGATTACAAATTATTTGTGGACCCAGCTTTCGGTGCTTTGC
GTTTCATCTCGAAGCCATTCAGGCACACTGTAGCGACGGAGGTTGAGTCC
ATCAGAAACACGCGCATTTCGCGCGTGCGCGTGACTGTGGAGCAAACAAT
AGGGCACATTACGCAGCAGCTTTCGGCCGTTGTTTTCGTACGAACAGAGC
GTGTCGGCGACGGGGATGTGTGCAAGAGAAACCTCGTCGGTTGCTTCTTG
CGCAACGTTTGGACGTGCGTGCGGGGAGGGAACCAAATCTTGGAGTTCTT
TGGGTGGTGCCCGCCGACACTTGAGTATTTTTTGGAAGAACGACAATTCC
GCGATCCTCTCCCACCCCGCCTGGAGCAAATGGGTGTCTTTCAACTACGG
ACATCAGAAGAACAAGAAGATGAGTGA
back to top
Synonyms
Publications