NO14G02140.1, NO14G02140.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO14G02140.1
Unique Name	NO14G02140.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2280
Alignment location	chr14:645512..647791 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr14	genome	chr14:645512..647791 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO14G02140.1 vs.

BLAST of NO14G02140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G02140	NO14G02140	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02140.1	NO14G02140.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO14G02140.1.cds1	NO14G02140.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:645512..647791+
coding sequence from alignment at chr14:645512..647791+

mRNA sequence

>NO14G02140.1 ID=NO14G02140.1|Name=NO14G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp
ATGGCAGCGACGGCAACCAGCTCCAGCAGCTTTTCCTTGCGGGACGTGAA
ACTAGACGACCTCTTGGCAGGCACGGGGCCCTATACAGGCTTGCAAAAGA
GTGTTCGTCTCACCTTCAAGTGTCTCACACAAGCCATACAGCAACAAGCG
AATGAGATGACCAAATTTTACGAGCAGCAAACCCGTCACAACTTGGAAAT
GGCGGCCCTCCAAGAGCAAGTCCAGACAAGCGCCGTCTCCATGCGCACCG
TCCGCACGCTGCTTGAAGGGCATGTAGAGGCGTTGCGAGCCGAGTTTTCA
CCGAAATTGCGAGGGCTTGAGGCCCGTGTTCAGGATATGGGGTCTCGCTT
AGTGGACGTTGAGCAGCAACAGCAGCGCCACTACCGCCGGTACCACTTTC
AAGAAGACCACAGTGCCAGCAGCAACAAAGAAGACAACATCCACCAAGTC
ACGCTGCATGTGGAGCGAATGCAAGCGGATTTGACCCGGCTGGCCCGTAC
AGTGGAGAGGAAGGCCGATCAGGAGGAAGTAGCGGCGGCCCTCCAGCAAA
GGGTTAATAAAGCCTCGCTTGCCAAGCGCATACATACCATCCTGGAAGAA
GACGAGCAGAACATCAACAACCGCAAAAGTGCCCGCAGTACTGGCAATAG
CACGGCCTTGATGACTGCGCATCAGCGTCTCAAAATGAAGCTTGCAGATC
AGGAAGAAGTAGTCCTCCGAATTCTCCAAGAAATGGAGGCAGTCAAAACC
TACGTGCTTGGCAGTGGGGACAAGGCCAATGGAGGGGGGGAAGATTCAAT
CACCACTATTATGAATAACCTGCAGAGCATGTTGCAGCAGCAAGGGCGAA
GGCTGCATCGAACGGAAAAGGACGTGGCTGGGCTGAGAGATCGTCTGCTT
CAGGATCATGCTGCGCTTGACACCAAGGTAGAGGAGCGGTGTCGTGCCCT
CCAACAGCAGCACCATGAGCAGCAGGAACAGCATCAGCAATTAGCCTGTG
TAGTGAGTAACATAGAGGTGGAGAGGAAGGAGGCTATGCCGCCACTGACG
ACGACGACAACAACCGCGGTGCTGGCTTTGGAAGAGCGTGTTAGAGCATT
CGAAAGTAACATTGTCAAGGAGTTGGATGTGCGCGATGCCGAAGTTCGTC
GGCACCTGGACAGTGCCAACCGTAACATCCGCGCCTTAGAAGCCAAAGTG
CAATGTGAGGAAAGTAGGGTCGAAGAGCGGTTGAACAAGGCTGAGGACTC
GGTAGCTTTCCAATCAGGTCAACGCCTTCATGTCCTCCGCAGAGTCGAGC
GCCTGGAGCAGCAACAGCTGAACCTTACAGCTGGTGTCAGCACCGCAAGA
GTCCGCTCTTCTTCCTCGGCCCGCTCTCCCATCAGTATCGGGCATGCTCC
CACTATTTCCCCCGCGGCCACTTCGGCGGCTGTTCGATCGTTCAACTATT
TTAGCACCCCTGACCCCTTGCGAGCCTATCAGAACGTGCAACAGCAAGAA
CAGCAACAGCAACCGCAACTTCAATGGCAGCAGCAGCACCACCACCACCA
CCAAGCACCACAGCATTCGCCCCCATCATTGGCACAGGCTCGCTTACCTT
TGCCTGTTGGTGGATTGGGGGGGTATCGCGGGACGGGAGCACCACCATTA
CCACCTGCAGGAGGAGATGGTGGAGGAAGTGGAGGAGGAGGTACATCAAT
CATACCTGCCCGGCCCAGCACCAGCACCATGACCTTAAAACCAGAGTACG
GCAGGACAGGAACTCTATCATTGTCGTCCTCACTACCATCATCTGCTCCT
GCTCCTCCTTCTCGCACCCATCTCCAGGCGACCGAGCACCCACACCAACA
ACGACAGAAGCATTACTCCCGGGATAACTCTTTGTCACAACATCCACCGC
CTCCTCTACTTGCATCGCCAGAATCCCTCCTTCCCCATCACCTCTATCAG
CAGCAGGAGCAGCCACCTCACGCGGCATGGCCAGTTGCCGCCAGTGCTGG
CACGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAGAGAGGG
AAGCTGGATTTGCAGAAAGTAAACAGGCCACAGGTGGTATTTCAGCAGCC
TGGTGCGGCAGTCTTACCACCGCTTCTTCTCCAGGAAGTCCAACTCCAGG
AGAGAGGGAGGGAAGGAGCGCGACTTCGACGGGTGGCATGAATTACAGTC
TGGAGAAGTTGGAGGCCTTGCGAGTGGAGAAGTTGGCGTTGCGGACGAGG
ATAGTAGAGGAGATGTGTCAGCGCAATTGA

protein sequence of NO14G02140.1

>NO14G02140.1-protein ID=NO14G02140.1-protein|Name=NO14G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=760bp
MAATATSSSSFSLRDVKLDDLLAGTGPYTGLQKSVRLTFKCLTQAIQQQA
NEMTKFYEQQTRHNLEMAALQEQVQTSAVSMRTVRTLLEGHVEALRAEFS
PKLRGLEARVQDMGSRLVDVEQQQQRHYRRYHFQEDHSASSNKEDNIHQV
TLHVERMQADLTRLARTVERKADQEEVAAALQQRVNKASLAKRIHTILEE
DEQNINNRKSARSTGNSTALMTAHQRLKMKLADQEEVVLRILQEMEAVKT
YVLGSGDKANGGGEDSITTIMNNLQSMLQQQGRRLHRTEKDVAGLRDRLL
QDHAALDTKVEERCRALQQQHHEQQEQHQQLACVVSNIEVERKEAMPPLT
TTTTTAVLALEERVRAFESNIVKELDVRDAEVRRHLDSANRNIRALEAKV
QCEESRVEERLNKAEDSVAFQSGQRLHVLRRVERLEQQQLNLTAGVSTAR
VRSSSSARSPISIGHAPTISPAATSAAVRSFNYFSTPDPLRAYQNVQQQE
QQQQPQLQWQQQHHHHHQAPQHSPPSLAQARLPLPVGGLGGYRGTGAPPL
PPAGGDGGGSGGGGTSIIPARPSTSTMTLKPEYGRTGTLSLSSSLPSSAP
APPSRTHLQATEHPHQQRQKHYSRDNSLSQHPPPPLLASPESLLPHHLYQ
QQEQPPHAAWPVAASAGTGGGGGGGGGGGEGEREAGFAESKQATGGISAA
WCGSLTTASSPGSPTPGEREGRSATSTGGMNYSLEKLEALRVEKLALRTR
IVEEMCQRN*

mRNA from alignment at chr14:645512..647791+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO14G02140.1 ID=NO14G02140.1|Name=NO14G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2280bp|location=Sequence derived from alignment at chr14:645512..647791+ (Nannochloropsis oceanica)
ATGGCAGCGACGGCAACCAGCTCCAGCAGCTTTTCCTTGCGGGACGTGAA
ACTAGACGACCTCTTGGCAGGCACGGGGCCCTATACAGGCTTGCAAAAGA
GTGTTCGTCTCACCTTCAAGTGTCTCACACAAGCCATACAGCAACAAGCG
AATGAGATGACCAAATTTTACGAGCAGCAAACCCGTCACAACTTGGAAAT
GGCGGCCCTCCAAGAGCAAGTCCAGACAAGCGCCGTCTCCATGCGCACCG
TCCGCACGCTGCTTGAAGGGCATGTAGAGGCGTTGCGAGCCGAGTTTTCA
CCGAAATTGCGAGGGCTTGAGGCCCGTGTTCAGGATATGGGGTCTCGCTT
AGTGGACGTTGAGCAGCAACAGCAGCGCCACTACCGCCGGTACCACTTTC
AAGAAGACCACAGTGCCAGCAGCAACAAAGAAGACAACATCCACCAAGTC
ACGCTGCATGTGGAGCGAATGCAAGCGGATTTGACCCGGCTGGCCCGTAC
AGTGGAGAGGAAGGCCGATCAGGAGGAAGTAGCGGCGGCCCTCCAGCAAA
GGGTTAATAAAGCCTCGCTTGCCAAGCGCATACATACCATCCTGGAAGAA
GACGAGCAGAACATCAACAACCGCAAAAGTGCCCGCAGTACTGGCAATAG
CACGGCCTTGATGACTGCGCATCAGCGTCTCAAAATGAAGCTTGCAGATC
AGGAAGAAGTAGTCCTCCGAATTCTCCAAGAAATGGAGGCAGTCAAAACC
TACGTGCTTGGCAGTGGGGACAAGGCCAATGGAGGGGGGGAAGATTCAAT
CACCACTATTATGAATAACCTGCAGAGCATGTTGCAGCAGCAAGGGCGAA
GGCTGCATCGAACGGAAAAGGACGTGGCTGGGCTGAGAGATCGTCTGCTT
CAGGATCATGCTGCGCTTGACACCAAGGTAGAGGAGCGGTGTCGTGCCCT
CCAACAGCAGCACCATGAGCAGCAGGAACAGCATCAGCAATTAGCCTGTG
TAGTGAGTAACATAGAGGTGGAGAGGAAGGAGGCTATGCCGCCACTGACG
ACGACGACAACAACCGCGGTGCTGGCTTTGGAAGAGCGTGTTAGAGCATT
CGAAAGTAACATTGTCAAGGAGTTGGATGTGCGCGATGCCGAAGTTCGTC
GGCACCTGGACAGTGCCAACCGTAACATCCGCGCCTTAGAAGCCAAAGTG
CAATGTGAGGAAAGTAGGGTCGAAGAGCGGTTGAACAAGGCTGAGGACTC
GGTAGCTTTCCAATCAGGTCAACGCCTTCATGTCCTCCGCAGAGTCGAGC
GCCTGGAGCAGCAACAGCTGAACCTTACAGCTGGTGTCAGCACCGCAAGA
GTCCGCTCTTCTTCCTCGGCCCGCTCTCCCATCAGTATCGGGCATGCTCC
CACTATTTCCCCCGCGGCCACTTCGGCGGCTGTTCGATCGTTCAACTATT
TTAGCACCCCTGACCCCTTGCGAGCCTATCAGAACGTGCAACAGCAAGAA
CAGCAACAGCAACCGCAACTTCAATGGCAGCAGCAGCACCACCACCACCA
CCAAGCACCACAGCATTCGCCCCCATCATTGGCACAGGCTCGCTTACCTT
TGCCTGTTGGTGGATTGGGGGGGTATCGCGGGACGGGAGCACCACCATTA
CCACCTGCAGGAGGAGATGGTGGAGGAAGTGGAGGAGGAGGTACATCAAT
CATACCTGCCCGGCCCAGCACCAGCACCATGACCTTAAAACCAGAGTACG
GCAGGACAGGAACTCTATCATTGTCGTCCTCACTACCATCATCTGCTCCT
GCTCCTCCTTCTCGCACCCATCTCCAGGCGACCGAGCACCCACACCAACA
ACGACAGAAGCATTACTCCCGGGATAACTCTTTGTCACAACATCCACCGC
CTCCTCTACTTGCATCGCCAGAATCCCTCCTTCCCCATCACCTCTATCAG
CAGCAGGAGCAGCCACCTCACGCGGCATGGCCAGTTGCCGCCAGTGCTGG
CACGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAGAGAGGG
AAGCTGGATTTGCAGAAAGTAAACAGGCCACAGGTGGTATTTCAGCAGCC
TGGTGCGGCAGTCTTACCACCGCTTCTTCTCCAGGAAGTCCAACTCCAGG
AGAGAGGGAGGGAAGGAGCGCGACTTCGACGGGTGGCATGAATTACAGTC
TGGAGAAGTTGGAGGCCTTGCGAGTGGAGAAGTTGGCGTTGCGGACGAGG
ATAGTAGAGGAGATGTGTCAGCGCAATTGA

Coding sequence (CDS) from alignment at chr14:645512..647791+

>NO14G02140.1 ID=NO14G02140.1|Name=NO14G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at chr14:645512..647791+ (Nannochloropsis oceanica)
ATGGCAGCGACGGCAACCAGCTCCAGCAGCTTTTCCTTGCGGGACGTGAA
ACTAGACGACCTCTTGGCAGGCACGGGGCCCTATACAGGCTTGCAAAAGA
GTGTTCGTCTCACCTTCAAGTGTCTCACACAAGCCATACAGCAACAAGCG
AATGAGATGACCAAATTTTACGAGCAGCAAACCCGTCACAACTTGGAAAT
GGCGGCCCTCCAAGAGCAAGTCCAGACAAGCGCCGTCTCCATGCGCACCG
TCCGCACGCTGCTTGAAGGGCATGTAGAGGCGTTGCGAGCCGAGTTTTCA
CCGAAATTGCGAGGGCTTGAGGCCCGTGTTCAGGATATGGGGTCTCGCTT
AGTGGACGTTGAGCAGCAACAGCAGCGCCACTACCGCCGGTACCACTTTC
AAGAAGACCACAGTGCCAGCAGCAACAAAGAAGACAACATCCACCAAGTC
ACGCTGCATGTGGAGCGAATGCAAGCGGATTTGACCCGGCTGGCCCGTAC
AGTGGAGAGGAAGGCCGATCAGGAGGAAGTAGCGGCGGCCCTCCAGCAAA
GGGTTAATAAAGCCTCGCTTGCCAAGCGCATACATACCATCCTGGAAGAA
GACGAGCAGAACATCAACAACCGCAAAAGTGCCCGCAGTACTGGCAATAG
CACGGCCTTGATGACTGCGCATCAGCGTCTCAAAATGAAGCTTGCAGATC
AGGAAGAAGTAGTCCTCCGAATTCTCCAAGAAATGGAGGCAGTCAAAACC
TACGTGCTTGGCAGTGGGGACAAGGCCAATGGAGGGGGGGAAGATTCAAT
CACCACTATTATGAATAACCTGCAGAGCATGTTGCAGCAGCAAGGGCGAA
GGCTGCATCGAACGGAAAAGGACGTGGCTGGGCTGAGAGATCGTCTGCTT
CAGGATCATGCTGCGCTTGACACCAAGGTAGAGGAGCGGTGTCGTGCCCT
CCAACAGCAGCACCATGAGCAGCAGGAACAGCATCAGCAATTAGCCTGTG
TAGTGAGTAACATAGAGGTGGAGAGGAAGGAGGCTATGCCGCCACTGACG
ACGACGACAACAACCGCGGTGCTGGCTTTGGAAGAGCGTGTTAGAGCATT
CGAAAGTAACATTGTCAAGGAGTTGGATGTGCGCGATGCCGAAGTTCGTC
GGCACCTGGACAGTGCCAACCGTAACATCCGCGCCTTAGAAGCCAAAGTG
CAATGTGAGGAAAGTAGGGTCGAAGAGCGGTTGAACAAGGCTGAGGACTC
GGTAGCTTTCCAATCAGGTCAACGCCTTCATGTCCTCCGCAGAGTCGAGC
GCCTGGAGCAGCAACAGCTGAACCTTACAGCTGGTGTCAGCACCGCAAGA
GTCCGCTCTTCTTCCTCGGCCCGCTCTCCCATCAGTATCGGGCATGCTCC
CACTATTTCCCCCGCGGCCACTTCGGCGGCTGTTCGATCGTTCAACTATT
TTAGCACCCCTGACCCCTTGCGAGCCTATCAGAACGTGCAACAGCAAGAA
CAGCAACAGCAACCGCAACTTCAATGGCAGCAGCAGCACCACCACCACCA
CCAAGCACCACAGCATTCGCCCCCATCATTGGCACAGGCTCGCTTACCTT
TGCCTGTTGGTGGATTGGGGGGGTATCGCGGGACGGGAGCACCACCATTA
CCACCTGCAGGAGGAGATGGTGGAGGAAGTGGAGGAGGAGGTACATCAAT
CATACCTGCCCGGCCCAGCACCAGCACCATGACCTTAAAACCAGAGTACG
GCAGGACAGGAACTCTATCATTGTCGTCCTCACTACCATCATCTGCTCCT
GCTCCTCCTTCTCGCACCCATCTCCAGGCGACCGAGCACCCACACCAACA
ACGACAGAAGCATTACTCCCGGGATAACTCTTTGTCACAACATCCACCGC
CTCCTCTACTTGCATCGCCAGAATCCCTCCTTCCCCATCACCTCTATCAG
CAGCAGGAGCAGCCACCTCACGCGGCATGGCCAGTTGCCGCCAGTGCTGG
CACGGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAGAGAGGG
AAGCTGGATTTGCAGAAAGTAAACAGGCCACAGGTGGTATTTCAGCAGCC
TGGTGCGGCAGTCTTACCACCGCTTCTTCTCCAGGAAGTCCAACTCCAGG
AGAGAGGGAGGGAAGGAGCGCGACTTCGACGGGTGGCATGAATTACAGTC
TGGAGAAGTTGGAGGCCTTGCGAGTGGAGAAGTTGGCGTTGCGGACGAGG
ATAGTAGAGGAGATGTGTCAGCGCAATTGA

Synonyms

Publications