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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:605049..607381 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01980.1 vs.
Match: EWM24659.1 (gtp-binding protein parf [Nannochloropsis gaditana]) HSP 1 Score: 448.7 bits (1153), Expect = 3.400e-122 Identity = 336/781 (43.02%), Postives = 452/781 (57.87%), Query Frame = 0
Query: 1 MGNEVSFAGTSSTSAATEDERRKAIRRMDGDLQKKLGKGIAHNLKLVLKGERGSGKSALLSRLKGQSFTSS-YEPTPEIQTATISWSAKEEGEIVKVEVWDVVDKGLGRRGSSDGDKTGSCG----GGGVAPDALAGIPLDLPAQI---HRASGSGSHSFGVLDATILDVWKGAHGGLFLINPFSATALSYIQKQLAEVPSHIPVLLLLNFRDL-----QPAGEDKQDIAEAQERVRRSTNLHRPVHVHLETLQAMAREERAKRRICHSFACSMQNCFGLTILHAYINLPFIVMKEEGLRRQMEQTRRELGEATREVEDAMTRESWGAYIATFGKKEKEGGVGQGKRQQQHYHHHQHDKEERQAKLQVAKAPIKAPMLITRSIGGGGVEEHKTSPFSSSSSSSSSSSSSSSSSPSSSSFSAITTTDNNTTSFPRTAKHQNILRGGPASTSARPQQRQQQQPPIPLADVDDFKFQP---NEQSELDLFLADGEGTEEEGALDEEQKEAEGRRLSLTSCLKPGSLGSLSKAERRAAGIAVGNGAGYGSDGEDEEEEVEGQDAVVAEIGEQRYVGLRPVTLSSQ--SLSPSTSVPEQVNMLSSATGRRGKKDEENAE------------KEPKEDDEFDVPAGLPNNSFVGDLSWDE--EEEECGIGVMGM-----GCSTNRSSKTPLNSSATAGTDASLTSAT------TSKTNVVLSEAARAAIAATMQELGEVVRPGGEEVGEAIEGGE--RRKHRHQDKSKSEGSSSSHRKHKKKSSGGR 737
MGN+VS +S TS +E++RR+AIRRMDG LQKKLGKG+AHNLK++++GERGSGKSALLSRLKGQ FTSS YEPTPEI+TATI+WSAKE+G +VKVE+WDVVDKGLGRRGS G+ G GG PDALAG+PLD+P H A SGSH+FGVLDATI+DVWKG+HGG+F++NPFS+TAL Y+QKQLAEVP IPVLLL NFRDL Q + ++D E V + R VH +L LQ ++ E+ A+ R CH+FACSMQNCFGL L+AY+N+PF+ MK + L RQ+ +TRR L T EVE+ + R SWG Y+A KE++ H +K ++A+ + + ++ S GV K SS +++ +S P + ++P G ++ PQ+ Q+ L DV+DFKFQP NEQ+EL LFLA+ EG E ++EE+ RR SL SCLKPGSL SLS+A+RRA G+ G +GE++E+ + AE GEQRYVGLRPV L ++ SLS ++ S ++G + KE D+ D+PAGLP DLS + E E+C G+ G S+ + + + S ++ +++S T+A KT+ VLS+AARAAIAATM+EL G GE + G+ RR+ R K K++ S ++ +GG+
Sbjct: 1 MGNDVS---SSITSIRSEEDRRQAIRRMDGALQKKLGKGVAHNLKIIIRGERGSGKSALLSRLKGQPFTSSVYEPTPEIETATINWSAKEDGAVVKVEIWDVVDKGLGRRGSLIGNNVRGTGTVAHDGGGDPDALAGLPLDVPVHAQRGHHAGASGSHAFGVLDATIVDVWKGSHGGIFMMNPFSSTALQYVQKQLAEVPRGIPVLLLANFRDLLLDDTQEGRKLEEDTKHEGESVEAAPVRPRRVHFNLRDLQEVSAEQTAQGRTCHAFACSMQNCFGLAQLYAYLNIPFLAMKGDVLERQLSETRRVLSAMTLEVEEGIDRGSWGDYVAALRAKEED-------------HAPVIEKSNKEARKPQSVRVLPDTVVPGTSRENTGVTRSKGEGHKPVGHVSSPAAAVASKHPRP--------IQGDPQAWP----------GVTCRSTQGPQRSSVQESG--LVDVEDFKFQPREGNEQNELTLFLAEAEGGSTEDDMNEER-----RRQSLRSCLKPGSLASLSEAQRRATGVVGSGDVREGDEGEEDED-------LPAEEGEQRYVGLRPVNLPAKDISLSERGCNADRGKGSLSDDQKKGLVGPLSVHEDGLGVWMTAQGKESDGKDDIDIPAGLPLPLHSLDLSQADSSEGEDCDQGIFNRKIQQPGDSSLQRTGNNMEGSLSSFSNSSTTAAPLPLEGLADKTDFVLSKAARAAIAATMEEL------NGRSPGEDLANGDLSRREQRSAGKMKTKASEGKRKRRNSSGNGGQ 727
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G01980.1 ID=NO14G01980.1|Name=NO14G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp ATGGGTAACGAAGTGAGCTTCGCTGGAACTTCTTCTACAAGTGCTGCAAC CGAGGATGAAAGGAGAAAGGCAATCCGACGGATGGATGGGGACCTCCAAA AAAAGCTAGGCAAAGGCATTGCCCACAATCTAAAGCTTGTGTTGAAAGGG GAGCGGGGGAGCGGTAAAAGTGCCTTGCTGAGCCGGCTCAAAGGCCAATC TTTCACATCGTCGTACGAGCCGACGCCCGAGATTCAGACAGCCACCATCA GCTGGAGTGCCAAGGAAGAAGGCGAGATTGTCAAAGTGGAAGTATGGGAC GTGGTGGACAAGGGCTTAGGTCGACGTGGTAGCAGTGATGGGGACAAGAC GGGAAGCTGCGGTGGTGGCGGAGTAGCGCCGGACGCACTCGCAGGCATTC CTCTAGACCTCCCCGCTCAAATACACCGCGCTAGTGGCTCGGGCAGTCAT TCTTTTGGCGTCCTCGATGCCACGATCTTGGATGTGTGGAAAGGCGCGCA TGGCGGCCTCTTTCTCATCAATCCATTCTCGGCCACGGCCTTGAGCTATA TACAAAAGCAGCTTGCCGAGGTGCCCTCCCATATCCCTGTTCTTCTTCTT CTCAACTTTCGAGACTTGCAACCTGCCGGTGAGGACAAGCAAGATATCGC AGAAGCCCAAGAAAGGGTACGACGATCTACGAATCTACACCGGCCCGTAC ACGTGCATCTGGAGACACTGCAGGCAATGGCCCGGGAGGAACGAGCGAAG AGACGGATCTGCCATTCTTTTGCCTGCTCGATGCAAAACTGCTTCGGGCT GACGATCCTCCACGCTTACATCAATCTCCCTTTTATCGTCATGAAAGAAG AGGGGCTCCGTCGACAGATGGAACAGACGAGACGGGAGCTGGGCGAGGCG ACGCGAGAGGTGGAAGATGCCATGACGCGTGAATCCTGGGGGGCATATAT AGCCACTTTTGGGAAGAAGGAAAAGGAGGGCGGAGTTGGGCAGGGGAAGA GGCAGCAGCAGCACTACCACCACCATCAGCATGATAAAGAAGAAAGACAA GCAAAGCTGCAGGTTGCCAAGGCGCCAATAAAGGCGCCGATGCTCATCAC ACGCTCCATTGGCGGTGGTGGCGTGGAAGAGCACAAGACTTCCCCTTTCT CTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCC CCCTCCTCCTCCTCCTTTTCAGCCATCACCACCACCGACAACAATACCAC GTCCTTTCCCAGGACAGCCAAGCATCAAAATATACTTCGAGGAGGTCCCG CATCGACGTCTGCACGGCCACAGCAGCGGCAGCAGCAGCAGCCGCCAATA CCACTGGCGGACGTGGACGACTTCAAATTTCAACCTAACGAGCAGAGTGA GCTTGACCTCTTTCTAGCCGACGGGGAGGGAACCGAGGAAGAGGGTGCAC TAGACGAGGAGCAAAAAGAGGCGGAGGGACGACGGTTGAGCTTGACGTCT TGCTTGAAGCCGGGTTCGCTTGGGTCGCTCAGCAAAGCGGAGCGCCGCGC AGCTGGCATAGCGGTGGGCAATGGTGCAGGATATGGGAGCGACGGTGAGG ACGAGGAGGAGGAAGTCGAAGGGCAGGATGCGGTCGTGGCTGAAATCGGG GAACAACGCTATGTAGGCCTAAGGCCTGTGACACTCTCATCCCAATCTTT GTCTCCTTCGACCAGCGTCCCAGAGCAAGTCAATATGTTGTCCAGTGCTA CAGGGAGAAGGGGGAAGAAGGACGAGGAGAATGCAGAGAAGGAGCCTAAA GAAGACGATGAGTTTGATGTGCCGGCAGGCCTTCCAAATAATTCTTTTGT GGGCGATCTGTCTTGGGACGAGGAGGAGGAGGAATGCGGCATAGGTGTCA TGGGCATGGGTTGTAGTACCAACAGGAGCAGCAAGACACCCTTGAATTCT TCCGCCACTGCTGGAACTGATGCTTCATTGACTTCTGCAACCACCTCCAA GACCAACGTTGTGTTGAGTGAGGCGGCACGGGCTGCCATCGCTGCAACCA TGCAAGAATTGGGAGAGGTAGTGCGGCCAGGAGGTGAAGAGGTCGGGGAG GCAATCGAGGGGGGGGAGCGGCGAAAACACCGGCATCAAGACAAAAGCAA GTCAGAAGGCTCGTCATCGTCACATCGTAAGCACAAAAAGAAAAGCAGTG GCGGCCGGCTGGCAGATAAGTTGTAGGGAAAAGCGGGAGCCATCAAAAAC CAGACATTCGATGGAATCTGAAAAGTGCAAGAAAGCAAGGACAAGCAAAT GGCGTAAATACCTCGAATGAACGCACAAGTGAG back to topprotein sequence of NO14G01980.1 >NO14G01980.1-protein ID=NO14G01980.1-protein|Name=NO14G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=742bp MGNEVSFAGTSSTSAATEDERRKAIRRMDGDLQKKLGKGIAHNLKLVLKG ERGSGKSALLSRLKGQSFTSSYEPTPEIQTATISWSAKEEGEIVKVEVWD VVDKGLGRRGSSDGDKTGSCGGGGVAPDALAGIPLDLPAQIHRASGSGSH SFGVLDATILDVWKGAHGGLFLINPFSATALSYIQKQLAEVPSHIPVLLL LNFRDLQPAGEDKQDIAEAQERVRRSTNLHRPVHVHLETLQAMAREERAK RRICHSFACSMQNCFGLTILHAYINLPFIVMKEEGLRRQMEQTRRELGEA TREVEDAMTRESWGAYIATFGKKEKEGGVGQGKRQQQHYHHHQHDKEERQ AKLQVAKAPIKAPMLITRSIGGGGVEEHKTSPFSSSSSSSSSSSSSSSSS PSSSSFSAITTTDNNTTSFPRTAKHQNILRGGPASTSARPQQRQQQQPPI PLADVDDFKFQPNEQSELDLFLADGEGTEEEGALDEEQKEAEGRRLSLTS CLKPGSLGSLSKAERRAAGIAVGNGAGYGSDGEDEEEEVEGQDAVVAEIG EQRYVGLRPVTLSSQSLSPSTSVPEQVNMLSSATGRRGKKDEENAEKEPK EDDEFDVPAGLPNNSFVGDLSWDEEEEECGIGVMGMGCSTNRSSKTPLNS SATAGTDASLTSATTSKTNVVLSEAARAAIAATMQELGEVVRPGGEEVGE AIEGGERRKHRHQDKSKSEGSSSSHRKHKKKSSGGRLADKL* back to topmRNA from alignment at chr14:605049..607381+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G01980.1 ID=NO14G01980.1|Name=NO14G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at chr14:605049..607381+ (Nannochloropsis oceanica) ATGGGTAACGAAGTGAGCTTCGCTGGAACTTCTTCTACAAGTGCTGCAAC
CGAGGATGAAAGGAGAAAGGCAATCCGACGGATGGATGGGGACCTCCAAA
AAAAGCTAGGCAAAGGCATTGCCCACAATCTAAAGCTTGTGTTGAAAGGG
GAGCGGGGGAGCGGTAAAAGTGCCTTGCTGAGCCGGCTCAAAGGCCAATC
TTTCACATCGTCGTACGAGCCGACGCCCGAGATTCAGACAGCCACCATCA
GCTGGAGTGCCAAGGAAGAAGGCGAGATTGTCAAAGTGGAAGTATGGGAC
GTGGTGGACAAGGGCTTAGGTCGACGTGGTAGCAGTGATGGGGACAAGAC
GGGAAGCTGCGGTGGTGGCGGAGTAGCGCCGGACGCACTCGCAGGCATTC
CTCTAGACCTCCCCGCTCAAATACACCGCGCTAGTGGCTCGGGCAGTCAT
TCTTTTGGCGTCCTCGATGCCACGATCTTGGATGTGTGGAAAGGCGCGCA
TGGCGGCCTCTTTCTCATCAATCCATTCTCGGCCACGGCCTTGAGCTATA
TACAAAAGCAGCTTGCCGAGGTGCCCTCCCATATCCCTGTTCTTCTTCTT
CTCAACTTTCGAGACTTGCAACCTGCCGGTGAGGACAAGCAAGATATCGC
AGAAGCCCAAGAAAGGGTACGACGATCTACGAATCTACACCGGCCCGTAC
ACGTGCATCTGGAGACACTGCAGGCAATGGCCCGGGAGGAACGAGCGAAG
AGACGGATCTGCCATTCTTTTGCCTGCTCGATGCAAAACTGCTTCGGGCT
GACGATCCTCCACGCTTACATCAATCTCCCTTTTATCGTCATGAAAGAAG
AGGGGCTCCGTCGACAGATGGAACAGACGAGACGGGAGCTGGGCGAGGCG
ACGCGAGAGGTGGAAGATGCCATGACGCGTGAATCCTGGGGGGCATATAT
AGCCACTTTTGGGAAGAAGGAAAAGGAGGGCGGAGTTGGGCAGGGGAAGA
GGCAGCAGCAGCACTACCACCACCATCAGCATGATAAAGAAGAAAGACAA
GCAAAGCTGCAGGTTGCCAAGGCGCCAATAAAGGCGCCGATGCTCATCAC
ACGCTCCATTGGCGGTGGTGGCGTGGAAGAGCACAAGACTTCCCCTTTCT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCC
CCCTCCTCCTCCTCCTTTTCAGCCATCACCACCACCGACAACAATACCAC
GTCCTTTCCCAGGACAGCCAAGCATCAAAATATACTTCGAGGAGGTCCCG
CATCGACGTCTGCACGGCCACAGCAGCGGCAGCAGCAGCAGCCGCCAATA
CCACTGGCGGACGTGGACGACTTCAAATTTCAACCTAACGAGCAGAGTGA
GCTTGACCTCTTTCTAGCCGACGGGGAGGGAACCGAGGAAGAGGGTGCAC
TAGACGAGGAGCAAAAAGAGGCGGAGGGACGACGGTTGAGCTTGACGTCT
TGCTTGAAGCCGGGTTCGCTTGGGTCGCTCAGCAAAGCGGAGCGCCGCGC
AGCTGGCATAGCGGTGGGCAATGGTGCAGGATATGGGAGCGACGGTGAGG
ACGAGGAGGAGGAAGTCGAAGGGCAGGATGCGGTCGTGGCTGAAATCGGG
GAACAACGCTATGTAGGCCTAAGGCCTGTGACACTCTCATCCCAATCTTT
GTCTCCTTCGACCAGCGTCCCAGAGCAAGTCAATATGTTGTCCAGTGCTA
CAGGGAGAAGGGGGAAGAAGGACGAGGAGAATGCAGAGAAGGAGCCTAAA
GAAGACGATGAGTTTGATGTGCCGGCAGGCCTTCCAAATAATTCTTTTGT
GGGCGATCTGTCTTGGGACGAGGAGGAGGAGGAATGCGGCATAGGTGTCA
TGGGCATGGGTTGTAGTACCAACAGGAGCAGCAAGACACCCTTGAATTCT
TCCGCCACTGCTGGAACTGATGCTTCATTGACTTCTGCAACCACCTCCAA
GACCAACGTTGTGTTGAGTGAGGCGGCACGGGCTGCCATCGCTGCAACCA
TGCAAGAATTGGGAGAGGTAGTGCGGCCAGGAGGTGAAGAGGTCGGGGAG
GCAATCGAGGGGGGGGAGCGGCGAAAACACCGGCATCAAGACAAAAGCAA
GTCAGAAGGCTCGTCATCGTCACATCGTAAGCACAAAAAGAAAAGCAGTG
GCGGCCGGCTGGCAGATAAGTTGTAGGGAAAAGCGGGAGCCATCAAAAAC
CAGACATTCGATGGAATCTGAAAAGTGCAAGAAAGCAAGGACAAGCAAAT
GGCGTAAATACCTCGAATGAACGCACAAGTGAG back to topCoding sequence (CDS) from alignment at chr14:605049..607381+ >NO14G01980.1 ID=NO14G01980.1|Name=NO14G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at chr14:605049..607381+ (Nannochloropsis oceanica) ATGGGTAACGAAGTGAGCTTCGCTGGAACTTCTTCTACAAGTGCTGCAAC CGAGGATGAAAGGAGAAAGGCAATCCGACGGATGGATGGGGACCTCCAAA AAAAGCTAGGCAAAGGCATTGCCCACAATCTAAAGCTTGTGTTGAAAGGG GAGCGGGGGAGCGGTAAAAGTGCCTTGCTGAGCCGGCTCAAAGGCCAATC TTTCACATCGTCGTACGAGCCGACGCCCGAGATTCAGACAGCCACCATCA GCTGGAGTGCCAAGGAAGAAGGCGAGATTGTCAAAGTGGAAGTATGGGAC GTGGTGGACAAGGGCTTAGGTCGACGTGGTAGCAGTGATGGGGACAAGAC GGGAAGCTGCGGTGGTGGCGGAGTAGCGCCGGACGCACTCGCAGGCATTC CTCTAGACCTCCCCGCTCAAATACACCGCGCTAGTGGCTCGGGCAGTCAT TCTTTTGGCGTCCTCGATGCCACGATCTTGGATGTGTGGAAAGGCGCGCA TGGCGGCCTCTTTCTCATCAATCCATTCTCGGCCACGGCCTTGAGCTATA TACAAAAGCAGCTTGCCGAGGTGCCCTCCCATATCCCTGTTCTTCTTCTT CTCAACTTTCGAGACTTGCAACCTGCCGGTGAGGACAAGCAAGATATCGC AGAAGCCCAAGAAAGGGTACGACGATCTACGAATCTACACCGGCCCGTAC ACGTGCATCTGGAGACACTGCAGGCAATGGCCCGGGAGGAACGAGCGAAG AGACGGATCTGCCATTCTTTTGCCTGCTCGATGCAAAACTGCTTCGGGCT GACGATCCTCCACGCTTACATCAATCTCCCTTTTATCGTCATGAAAGAAG AGGGGCTCCGTCGACAGATGGAACAGACGAGACGGGAGCTGGGCGAGGCG ACGCGAGAGGTGGAAGATGCCATGACGCGTGAATCCTGGGGGGCATATAT AGCCACTTTTGGGAAGAAGGAAAAGGAGGGCGGAGTTGGGCAGGGGAAGA GGCAGCAGCAGCACTACCACCACCATCAGCATGATAAAGAAGAAAGACAA GCAAAGCTGCAGGTTGCCAAGGCGCCAATAAAGGCGCCGATGCTCATCAC ACGCTCCATTGGCGGTGGTGGCGTGGAAGAGCACAAGACTTCCCCTTTCT CTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCC CCCTCCTCCTCCTCCTTTTCAGCCATCACCACCACCGACAACAATACCAC GTCCTTTCCCAGGACAGCCAAGCATCAAAATATACTTCGAGGAGGTCCCG CATCGACGTCTGCACGGCCACAGCAGCGGCAGCAGCAGCAGCCGCCAATA CCACTGGCGGACGTGGACGACTTCAAATTTCAACCTAACGAGCAGAGTGA GCTTGACCTCTTTCTAGCCGACGGGGAGGGAACCGAGGAAGAGGGTGCAC TAGACGAGGAGCAAAAAGAGGCGGAGGGACGACGGTTGAGCTTGACGTCT TGCTTGAAGCCGGGTTCGCTTGGGTCGCTCAGCAAAGCGGAGCGCCGCGC AGCTGGCATAGCGGTGGGCAATGGTGCAGGATATGGGAGCGACGGTGAGG ACGAGGAGGAGGAAGTCGAAGGGCAGGATGCGGTCGTGGCTGAAATCGGG GAACAACGCTATGTAGGCCTAAGGCCTGTGACACTCTCATCCCAATCTTT GTCTCCTTCGACCAGCGTCCCAGAGCAAGTCAATATGTTGTCCAGTGCTA CAGGGAGAAGGGGGAAGAAGGACGAGGAGAATGCAGAGAAGGAGCCTAAA GAAGACGATGAGTTTGATGTGCCGGCAGGCCTTCCAAATAATTCTTTTGT GGGCGATCTGTCTTGGGACGAGGAGGAGGAGGAATGCGGCATAGGTGTCA TGGGCATGGGTTGTAGTACCAACAGGAGCAGCAAGACACCCTTGAATTCT TCCGCCACTGCTGGAACTGATGCTTCATTGACTTCTGCAACCACCTCCAA GACCAACGTTGTGTTGAGTGAGGCGGCACGGGCTGCCATCGCTGCAACCA TGCAAGAATTGGGAGAGGTAGTGCGGCCAGGAGGTGAAGAGGTCGGGGAG GCAATCGAGGGGGGGGAGCGGCGAAAACACCGGCATCAAGACAAAAGCAA GTCAGAAGGCTCGTCATCGTCACATCGTAAGCACAAAAAGAAAAGCAGTG GCGGCCGGCTGGCAGATAAGTTGTAG back to top
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