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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr14 | genome | chr14:33084..35056 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00110.3 vs.
Match: EWM24786.1 (glycoprotein fp21 [Nannochloropsis gaditana]) HSP 1 Score: 125.6 bits (314), Expect = 1.200e-25 Identity = 64/92 (69.57%), Postives = 82/92 (89.13%), Query Frame = 0
Query: 13 SPLPLLLQPITQSSLGEVVQEEYSDYIQSLSYRDLIQVLELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEADLRKEY 105
+PL + +PI ++SLGE+VQ+EYS++I+SL YRDL+QV+ELAHFLVL+PLLRL+LAR+HF+LKATPLEEFKRLFLFQNDLT EEE R+ +
Sbjct: 68 TPLQDIPKPILENSLGEIVQKEYSEFIESLPYRDLVQVMELAHFLVLDPLLRLSLARVHFILKATPLEEFKRLFLFQNDLTQEEEKVRRETH 159
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00110.3 ID=NO14G00110.3|Name=NO14G00110.3|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
AACAGAATATGAATGTTCGCATCATCTTGAAAAATGGACAGGAACTGGAC
GCCGCGGTTGACGCAGCCTTGCTCCTGCCCTCGAGCCTTCTAGCCGGCAT
GCTCGACGACGAGGAAGAGGAACTTCGGGGCGAAGAGGAAGAGCGCATGC
TCACCCTCCCTACTGTCGAGAAGGCGACCTTTGAAAACGTCTTGCGCTTC
CTGCGCCTTCACGCCCATGCCCGCATGCACGACATCCCCAAGGTAGGTAG
GAGACACACAGAGGCTTCAACACGAAGGAAAGAAAAAGAAGGAGGGGGCG
GGAGAAAAGTGCTTGTTATGTAGTCGGATGAGGCGGAGGAGGGACTGTCG
GGTTCAAGAGAGACAGGGGAGGGATAAGCTGGATGCCCTCGTGCAGGAGT
TTATGAGATGCCTGGAGGAATTGACTCATGGGAAAGAAAAAAAAGGAAAA
GGGAGCGGAAAATAGCATGGAGGTGGACGAAGAGCATGAGGAAAATGAGG
AGGATGAGAGCAGAAGAAAAAGAGGAAAGACGATGCATAATCGCAGGCGC
ATTTCCTCGTGATGAATGAGGCGCTCACATCCCCTCCAATACCTCCTTCT
CCTCTTCCTCTCCTCCTCCAGCCCATCACCCAATCGAGTCTTGGCGAGGT
AGTGCAAGAAGAATATAGCGACTACATCCAATCACTCTCCTACAGAGACC
TCATTCAGGTGCTGGAACTCGCTCACTTTCTGGTGCTGGAGCCCCTTCTC
CGCTTGGCCCTCGCCCGCCTTCACTTTGTGCTAAAAGCGACCCCGCTGGA
GGAGTTCAAGCGCTTGTTCCTCTTCCAGAACGACTTGACGCCGGAGGAAG
AAGCGGACCTTCGCAAGGAGTATCTGGAAGAGATCAAGCTCCGCAACGCC
TTCTCGTTCAAGGCGGCGCAGGAGCAGCAAGAGGGAGGAGGAGGAGGGGG
AGGAGGGGAGGCGAGCACGGCGCAGCCCTAGAGGTAGCCTTGGGCGTAGA
GAGAGGGCGGGGGAGAGGGGGGAGTGAAAGAAGGGATGTACAGAAGGCGG
GACCGAGGACGGGACCGAGGACGGGACCGCGGACGGGACCGAGGACGGGA
CCGAGGACGGGGGGGCATTGGCGAGTGTGAGCACACCGAGAGGATGCCTG
CGGTGAACTTTGTTGATTGGATTGAGGATGGAAAGTCGTCGAAGATGGAC
GGATGAGAGGCAAAGGGTGTGAAGGACCAGGTGGAGGGAGAGAGAAAGAA
AGAGAGAGCCGAGGACACACACACAGATAGAAGGAGAAGAAATAATAGCA
GGAGAGGAGGAGGAAGAAGGAGAAGTAGAAGAGGAAGGAGGGGAAGAAGT
AGTTCAAGATCAAGAAGAAAAGAAGAAATGAGAGGAATAGGACTTCTTTC
ATGA back to topprotein sequence of NO14G00110.3 >NO14G00110.3-protein ID=NO14G00110.3-protein|Name=NO14G00110.3|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MNEALTSPPIPPSPLPLLLQPITQSSLGEVVQEEYSDYIQSLSYRDLIQV
LELAHFLVLEPLLRLALARLHFVLKATPLEEFKRLFLFQNDLTPEEEADL
RKEYLEEIKLRNAFSFKAAQEQQEGGGGGGGGEASTAQP* back to topmRNA from alignment at chr14:33084..35056- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00110.3 ID=NO14G00110.3|Name=NO14G00110.3|organism=Nannochloropsis oceanica|type=mRNA|length=1973bp|location=Sequence derived from alignment at chr14:33084..35056- (Nannochloropsis oceanica)
AACAGAATATGAATGTTCGCATCATCTTGAAAAATGGACAGGAACTGGAC
GCCGCGGTTGACGCAGCCTTGCTCCTGCCCTCGAGCCTTCTAGCCGGCAT
GCTCGACGACGAGGAAGAGGAACTTCGGGGTAAGTGAGGGACGGATGGAA
ATGAGGTGCAAAAAAGCAATAAATGGGTAAGGTGTATCTAGAAATGTGGC
TGTATTCTCCCGTCGATAGCACTCCTACTAAGGGTAGGCGCCGCTCTGGT
CCGTTTTATATGTGCGCGCCGATCGAGAGGCATGGTGACATGCTATACGC
TCATTTATACACCCCAAGAGCTTTACTGCACATTTATCCTGCGCATGTCT
GTGAGGCTAAAGATTTCTGCTTTTGCTCATACATCTCCCACAGGCGAAGA
GGAAGAGCGCATGCTCACCCTCCCTACTGTCGAGAAGGCGACCTTTGAAA
ACGTCTTGCGCTTCCTGCGCCTTCACGCCCATGCCCGCATGCACGACATC
CCCAAGGTAGGTAGGAGACACACAGAGGCTTCAACACGAAGGAAAGAAAA
AGAAGGAGGGGGCGGGAGAAAAGTGCTTGTTATGTAGTCGGATGAGGCGG
AGGAGGGACTGTCGGGTTCAAGAGAGACAGGGGAGGGATAAGCTGGATGC
CCTCGTGCAGGAGTTTATGAGATGCCTGGAGGAATTGACTCATGGGAAAG
AAAAAAAAGGAAAAGGGAGCGGAAAATAGCATGGAGGTGGACGAAGAGCA
TGAGGAAAATGAGGAGGATGAGAGCAGAAGAAAAAGAGGAAAGACGATGC
ATAATCGCAGGCGCATTTCCTCGTGATGAATGAGGCGCTCACATCCCCTC
CAATACCTCCTTCTCCTCTTCCTCTCCTCCTCCAGCCCATCACCCAATCG
AGTCTTGGCGAGGTAGTGCAAGAAGAATATAGCGACTACATCCAATCACT
CTCCTACAGAGACCTCATTCAGGTACGTAGGCGGTGCTTTTCCCTCCTTT
CTCCCTCCTCCCTCAAGCCCTCCCTTCCCCTTCCAGGTGCTGGAACTCGC
TCACTTTCTGGTGCTGGAGCCCCTTCTCCGCTTGGCCCTCGCCCGCCTTC
ACTTTGTGCTAAAAGCGACCCCGCTGGAGGAGTTCAAGCGCTTGTTCCTC
TTCCAGAACGACTTGACGCCGGAGGAAGAAGCGGTAGGGAGGGAGGGAGG
GAGGGAGGGAAGAAGGGTGAATGGGGGTGAGTATAAGGCGTCCAACGCGG
CCGTAGTTTGGACGGAGAAAAGAGATGAACGAGGTGAATAAGGGGGGAGG
GAGGGAAGAGAGGGAGGGAAGGGATGGAGGGAGGGGGAGTCTGACCCAGG
GATGAAAAGAGAACCCGACGCTGACAACCCCTCTCCTCTCCCTCCCTGCC
TTCCTCCTTCCGCCCCTCCCTCAGGACCTTCGCAAGGAGTATCTGGAAGA
GATCAAGCTCCGCAACGCCTTCTCGTTCAAGGCGGCGCAGGAGCAGCAAG
AGGGAGGAGGAGGAGGGGGAGGAGGGGAGGCGAGCACGGCGCAGCCCTAG
AGGTAGCCTTGGGCGTAGAGAGAGGGCGGGGGAGAGGGGGGAGTGAAAGA
AGGGATGTACAGAAGGCGGGACCGAGGACGGGACCGAGGACGGGACCGCG
GACGGGACCGAGGACGGGACCGAGGACGGGGGGGCATTGGCGAGTGTGAG
CACACCGAGAGGATGCCTGCGGTGAACTTTGTTGATTGGATTGAGGATGG
AAAGTCGTCGAAGATGGACGGATGAGAGGCAAAGGGTGTGAAGGACCAGG
TGGAGGGAGAGAGAAAGAAAGAGAGAGCCGAGGACACACACACAGATAGA
AGGAGAAGAAATAATAGCAGGAGAGGAGGAGGAAGAAGGAGAAGTAGAAG
AGGAAGGAGGGGAAGAAGTAGTTCAAGATCAAGAAGAAAAGAAGAAATGA
GAGGAATAGGACTTCTTTCATGA back to topCoding sequence (CDS) from alignment at chr14:33084..35056- >NO14G00110.3 ID=NO14G00110.3|Name=NO14G00110.3|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at chr14:33084..35056- (Nannochloropsis oceanica)
ATGAATGAGGCGCTCACATCCCCTCCAATACCTCCTTCTCCTCTTCCTCT
CCTCCTCCAGCCCATCACCCAATCGAGTCTTGGCGAGGTAGTGCAAGAAG
AATATAGCGACTACATCCAATCACTCTCCTACAGAGACCTCATTCAGGTG
CTGGAACTCGCTCACTTTCTGGTGCTGGAGCCCCTTCTCCGCTTGGCCCT
CGCCCGCCTTCACTTTGTGCTAAAAGCGACCCCGCTGGAGGAGTTCAAGC
GCTTGTTCCTCTTCCAGAACGACTTGACGCCGGAGGAAGAAGCGGACCTT
CGCAAGGAGTATCTGGAAGAGATCAAGCTCCGCAACGCCTTCTCGTTCAA
GGCGGCGCAGGAGCAGCAAGAGGGAGGAGGAGGAGGGGGAGGAGGGGAGG
CGAGCACGGCGCAGCCCTAG back to top
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