NO13G03440.1, NO13G03440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G03440.1
Unique NameNO13G03440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1195
Alignment locationchr13:1028273..1029734 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:1028273..1029734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G03440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G03440NO13G03440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G03440.1NO13G03440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G03440.1.cds1NO13G03440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G03440.1.cds2NO13G03440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G03440.1 ID=NO13G03440.1|Name=NO13G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp
ATGGAAGCGGAGGACGGAGAGGAGGGGCTCGGATGGGAAGGAGAGAAGAA
GCGAGTCCATGCTATCAGGGCGAAGCCTGAAGACGAGGAGTACGATGACG
AGAAGGAGGAGAGGAAGACTAGGAGGAGGGAGGCGCGCTACGCGTGTGGT
AGCAGCAGCATCAGCAGCATCAGCAGCATCAGCAGCATCAGCAGCATCAG
CAGCATCAGCAGGAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCC
GCAGCAGCATCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
TGGTGCCACCGTCCACCACAACCCACCACAAACACCTTTCTATCATCCCT
ACCAGCGCTCGGGCCTTCACCTGCCACGCCTCTTTCCGGTGCACGCACCA
CATGCACGGGCGGACTCCGCACGCATCACCAGTCCAACTTATGACAGGCT
GCCCGTCGAAGCTAAGGTTTGAAGCACCACATAATCCATTTACAAGACAC
CCAATCGGTATATACGAGCCTTTTAAAACGAGTCCACTGTCAGAGGTCTT
GTGTTTAGCCAATTCTTGGTATTGCATCGTCTAGATGACAACAAAGGGTG
TCCATACTGCTGTAGGGAGGGAAAGAAAGAGAGAGAGCAAGGAAAGCAAA
GCCGGCGGAAAGGAAACGCAGCTGGCTATAAGCCACTTCAAATGAAAGCA
AAGGAGACAGCACGCTCCCACACTGTCAAGGCGATGACAAGGAAAAAATG
AAGCATGGAGGTGAGGACTCACACTCCACTCTCCTATGCAACCAACACAT
CCATCATACCCCCGCCCCCCCGGCCCCTCAAGGCTCACCTCCTCCGAACG
CATCCCATCCTTTTCCTACATTTCTTCTCTTTCCCCTCTCTATATTCCCT
TTCAACAGGCCAAGGTATGACTGATGCTGGTGTTGCATCCAATGTCAACG
GAAAGAGGAGAGGGGGGCGGCAAGAAATCGAAATAGCCCAACGGATGCTC
TAGCTGACTAAGACAAGCAGGATGACGTCGAGAATCATGTTGGTCGTGGC
TGCAGAAACGTGTAGATCGCGAAGCAGATGAGGACGGGATAGGGCGAGAA
CCAGACCGGATTGGTGGGAGCGAGCGACGAGGGAACGAGCGACGACGGAA
CGACCGACGAGGGAGCGAGGGTGGGGGGAGGGAGGGAGAGAGGGG
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protein sequence of NO13G03440.1

>NO13G03440.1-protein ID=NO13G03440.1-protein|Name=NO13G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MEAEDGEEGLGWEGEKKRVHAIRAKPEDEEYDDEKEERKTRRREARYACG
SSSISSISSISSISSISSISRSSSISSSSSSSSRSSISISSSSSSSSSSS
WCHRPPQPTTNTFLSSLPALGPSPATPLSGARTTCTGGLRTHHQSNL*
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mRNA from alignment at chr13:1028273..1029734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G03440.1 ID=NO13G03440.1|Name=NO13G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1462bp|location=Sequence derived from alignment at chr13:1028273..1029734+ (Nannochloropsis oceanica)
ATGGAAGCGGAGGACGGAGAGGAGGGGCTCGGATGGGAAGGAGAGAAGAA
GCGAGTCCATGCTATCAGGGCGAAGCCTGAAGACGAGGAGTACGATGACG
AGAAGGAGGAGAGGAAGACTAGGAGGAGGGAGGCGCGCTAGTGTCCTCGT
CTTCATTTCTCCCCTTCCTCCCTTTCTCCCTCCTATGCCAAAAGTGTCTT
TTGACAAGGTGGAATTAAAATTGACATCATATTTTGACAGCCCAACATAG
TTGGCCAATCACGGCGGGAAAAGAAAGACAGAGAGTAACGGCTGGTCTGT
TCAAAATTTTGAACACCTAGGGAGGTTGGTGGAGGGGTTAGAGGGTACAG
GGGGCCCACACAATGTCGCACACACGTACCCAGATGAACACACATACATA
AACTTAGCGCGTGTGGTAGCAGCAGCATCAGCAGCATCAGCAGCATCAGC
AGCATCAGCAGCATCAGCAGCATCAGCAGGAGCAGCAGCATCAGCAGCAG
CAGCAGCAGCAGCAGCCGCAGCAGCATCAGCATCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCTGGTGCCACCGTCCACCACAACCCACCACAAAC
ACCTTTCTATCATCCCTACCAGCGCTCGGGCCTTCACCTGCCACGCCTCT
TTCCGGTGCACGCACCACATGCACGGGCGGACTCCGCACGCATCACCAGT
CCAACTTATGACAGGCTGCCCGTCGAAGCTAAGGTTTGAAGCACCACATA
ATCCATTTACAAGACACCCAATCGGTATATACGAGCCTTTTAAAACGAGT
CCACTGTCAGAGGTCTTGTGTTTAGCCAATTCTTGGTATTGCATCGTCTA
GATGACAACAAAGGGTGTCCATACTGCTGTAGGGAGGGAAAGAAAGAGAG
AGAGCAAGGAAAGCAAAGCCGGCGGAAAGGAAACGCAGCTGGCTATAAGC
CACTTCAAATGAAAGCAAAGGAGACAGCACGCTCCCACACTGTCAAGGCG
ATGACAAGGAAAAAATGAAGCATGGAGGTGAGGACTCACACTCCACTCTC
CTATGCAACCAACACATCCATCATACCCCCGCCCCCCCGGCCCCTCAAGG
CTCACCTCCTCCGAACGCATCCCATCCTTTTCCTACATTTCTTCTCTTTC
CCCTCTCTATATTCCCTTTCAACAGGCCAAGGTATGACTGATGCTGGTGT
TGCATCCAATGTCAACGGAAAGAGGAGAGGGGGGCGGCAAGAAATCGAAA
TAGCCCAACGGATGCTCTAGCTGACTAAGACAAGCAGGATGACGTCGAGA
ATCATGTTGGTCGTGGCTGCAGAAACGTGTAGATCGCGAAGCAGATGAGG
ACGGGATAGGGCGAGAACCAGACCGGATTGGTGGGAGCGAGCGACGAGGG
AACGAGCGACGACGGAACGACCGACGAGGGAGCGAGGGTGGGGGGAGGGA
GGGAGAGAGGGG
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Coding sequence (CDS) from alignment at chr13:1028273..1029734+

>NO13G03440.1 ID=NO13G03440.1|Name=NO13G03440.1|organism=Nannochloropsis oceanica|type=CDS|length=444bp|location=Sequence derived from alignment at chr13:1028273..1029734+ (Nannochloropsis oceanica)
ATGGAAGCGGAGGACGGAGAGGAGGGGCTCGGATGGGAAGGAGAGAAGAA
GCGAGTCCATGCTATCAGGGCGAAGCCTGAAGACGAGGAGTACGATGACG
AGAAGGAGGAGAGGAAGACTAGGAGGAGGGAGGCGCGCTACGCGTGTGGT
AGCAGCAGCATCAGCAGCATCAGCAGCATCAGCAGCATCAGCAGCATCAG
CAGCATCAGCAGGAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCC
GCAGCAGCATCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
TGGTGCCACCGTCCACCACAACCCACCACAAACACCTTTCTATCATCCCT
ACCAGCGCTCGGGCCTTCACCTGCCACGCCTCTTTCCGGTGCACGCACCA
CATGCACGGGCGGACTCCGCACGCATCACCAGTCCAACTTATGA
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Synonyms
Publications