NO13G02720.1, NO13G02720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G02720.1
Unique NameNO13G02720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2105
Alignment locationchr13:747599..749703 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:747599..749703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G02720.1 vs.
Match: EWM21938.1 (mov34 mpn pad-1 family protein [Nannochloropsis gaditana])

HSP 1 Score: 411.8 bits (1057), Expect = 2.400e-111
Identity = 220/336 (65.48%), Postives = 265/336 (78.87%), Query Frame = 0 
Query:    7 GGGGSSSTSTSNAINNNLLLEGQEGEGNRSGRHIALHPLAIVTICDHCTRVKVGGSLLHPTSRILGILFGVQDGLQVSITDAFELQYELSPAGDGSVRIPPGYVNEKRELFGAVHPGAEVMGWYSVGESILPGDLEIHRAMCEWNESPFFLLLSPAASSGGAGAGVAAGSVKEGELPVRLFESELHVSRGVPTMMFVRVPFRLSAAEAERISVEHVVKAAPMEGASSVDLHVDGVRTSLKALVLRVKTILKVLERLKEGGKEGGLKTEDWKLLRMVGSLCDSLPAAGREGGRGVREWEESFLREYSDSLVVTYLASVSKLSCLTGEVSEKFAVAFG 343
            GG G ++ + +     +++LE  E  GN+SGRH+ALHPLA+VTICDHCTRVKVGGSLL  TSRILGILFGVQ+GLQVSITDAFELQYE++   +GSV+IP GYVNEK+ELFGAV+ GAEVMGWYSVGE +LPGDLEIHRAM EWNESPFFLLLSPAAS GG   G A G VKEGELP R+FE+ELH+ RGVP+M+FV VPFRL+AAEAERISVEHVVKAAP+E AS VDLHVD V++SL ALV RVK IL++L+ +K      G    D +LLRMV +LCD LPAAG  G     +++++   +Y DSLV+TYLAS++KLS L+ ++ E   V  G
Sbjct:   25 GGSGLNAPTAAAQEERSVVLE--EEAGNKSGRHVALHPLALVTICDHCTRVKVGGSLLPVTSRILGILFGVQNGLQVSITDAFELQYEITE--NGSVKIPAGYVNEKKELFGAVNQGAEVMGWYSVGEHVLPGDLEIHRAMTEWNESPFFLLLSPAASPGGDEGGAAPG-VKEGELPARVFETELHMMRGVPSMLFVPVPFRLTAAEAERISVEHVVKAAPLEAASWVDLHVDVVKSSLSALVARVKAILRLLQAVKT-----GQAPPDRRLLRMVRALCDRLPAAGPSG-----DFQDALTGDYQDSLVITYLASITKLSSLSSDMRELEGVRVG 345
The following BLAST results are available for this feature:
BLAST of NO13G02720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21938.12.400e-11165.48mov34 mpn pad-1 family protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G02720NO13G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G02720.1NO13G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G02720.1.cds1NO13G02720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G02720.1 ID=NO13G02720.1|Name=NO13G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2105bp
TAGATTGTGGGGGGGTAGCGGTAGAGGACGAGTCGTGAGTCTTGTGCTTT
CGCTCTTTACACTACTTGTGTTGTCGCTTCGGCGAGGCCTCATCCTACAC
AACCTTATGCCACCCTGTCTGACGCAACACAAATACCAGTTACGAACAGG
AGGAACAACAAAACAAATATGGACCAGCCTTGACCAGGCGTGGTGCGCCC
ATTGGGATTGCCATAGCTGCAATCTTACTCCTTTCATGTCCCCGTCTTTA
CTACAGTAGTTCACGACGAGGCCCAGCCAAAACCCTTCACTACGTTGTGC
GAGCGACAGGAATATCTCATCCTCCTTATCTTACACGACACACATCACAA
ATTTGCAGCAATTCTTCGAGCTCCGGTTCTCTGAAGCGACAGCCATGGAC
CTCGAAGGAGGAGGTGGAGGAGGTAGCAGCTCGACCAGCACAAGCAACGC
CATCAATAACAATCTCCTCCTGGAAGGCCAAGAAGGAGAGGGCAACAGAT
CCGGGCGCCATATAGCTCTGCATCCTCTCGCCATCGTCACCATCTGTGAC
CACTGTACTCGGGTCAAAGTCGGTGGCTCCCTCCTACACCCTACCTCGCG
CATTCTTGGCATCCTCTTCGGTGTCCAAGACGGACTCCAAGTCTCCATCA
CAGACGCCTTTGAACTCCAATATGAGCTCTCCCCCGCTGGTGATGGCTCC
GTTCGAATCCCTCCTGGATACGTCAATGAAAAAAGGGAGCTCTTTGGGGC
GGTTCACCCCGGGGCGGAGGTCATGGGGTGGTATAGTGTGGGCGAAAGCA
TCTTACCCGGAGACCTCGAGATCCATCGGGCCATGTGCGAATGGAATGAG
TCGCCTTTTTTCTTGTTATTATCGCCCGCGGCATCGTCGGGTGGAGCGGG
GGCAGGAGTGGCGGCTGGGAGTGTGAAGGAGGGGGAGTTACCTGTACGAT
TGTTTGAGTCGGAATTGCATGTGTCTCGCGGGGTGCCGACCATGATGTTT
GTCAGGGTGCCCTTTCGCTTATCGGCAGCGGAGGCAGAGCGAATTAGTGT
GGAGCATGTCGTGAAAGCGGCGCCGATGGAGGGGGCGAGTAGCGTGGACT
TGCACGTCGATGGGGTAAGGACCAGTCTGAAGGCGTTAGTTTTGAGAGTG
AAGACGATTTTGAAGGTATTGGAGAGGTTGAAGGAGGGAGGGAAGGAGGG
AGGATTGAAGACAGAAGATTGGAAGTTGTTGAGGATGGTTGGATCGTTGT
GTGATTCGTTGCCTGCTGCGGGGCGCGAGGGGGGAAGGGGAGTGAGGGAA
TGGGAGGAGTCGTTCTTGAGGGAATATAGTGATAGTCTGGTTGTGACGTA
CCTGGCGAGTGTGAGTAAATTGTCGTGTCTGACTGGTGAAGTGAGTGAGA
AATTTGCGGTGGCCTTTGGGGAGGGCCGGGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GAGGGGGGGAAGAATCAGGCGCTGGAGAGGAGGGGGGGAGGAAGGGTGAA
ATCTGGGAAGGATCGAATATATTAGGATCGAAATGGCGCGAGAACGACGG
CATGAGGTGTCATTTGTTTGGTGGGGGGAAGAGGGGTGCTGGTGGTGGAG
TAAATGGAGTTAATGACAGAAAGGGCATTAGATCGCTTTTCTGCTGGGGG
GGGGTGGTTGCGGCCGGGAGGGAATGAAAGGGAGAGCCGCCGACGAGAGT
ATGAGGATTCGAGATCAGGGTATCAAATATGAGCAAATACAAAGCGCAAA
AGACGGTGAGGTTGCTGAGGGGATGTTATGAAAGGAAGAAAAAGAAGAGT
GTTTCACAGCCATACCCCCACTTTTGGAACAATCCTTGTGTCCCCCACTG
TCCTGTTGGTGTTCTGTGTTGCATACTGTAAATGGGGCTGCACGACCAAC
CTCGACAATTTAAGTTTGAAAGACGTGCCTGCACAGTCGATGATGAACCT
CAACACAAGAGGTGGGACACGAGCGGCCGCCAGCAACCTGTTGTTTACGC
TCGTTCCCATGTAATGTATTCTCTCCCTACCTAAGCAACTTTCATTTATA
TAAAT
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protein sequence of NO13G02720.1

>NO13G02720.1-protein ID=NO13G02720.1-protein|Name=NO13G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MDLEGGGGGGSSSTSTSNAINNNLLLEGQEGEGNRSGRHIALHPLAIVTI
CDHCTRVKVGGSLLHPTSRILGILFGVQDGLQVSITDAFELQYELSPAGD
GSVRIPPGYVNEKRELFGAVHPGAEVMGWYSVGESILPGDLEIHRAMCEW
NESPFFLLLSPAASSGGAGAGVAAGSVKEGELPVRLFESELHVSRGVPTM
MFVRVPFRLSAAEAERISVEHVVKAAPMEGASSVDLHVDGVRTSLKALVL
RVKTILKVLERLKEGGKEGGLKTEDWKLLRMVGSLCDSLPAAGREGGRGV
REWEESFLREYSDSLVVTYLASVSKLSCLTGEVSEKFAVAFGEGRGGGGG
GGGGGGGGGGGGGGGGGGGRGGRIRRWRGGGEEG*
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mRNA from alignment at chr13:747599..749703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G02720.1 ID=NO13G02720.1|Name=NO13G02720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2105bp|location=Sequence derived from alignment at chr13:747599..749703- (Nannochloropsis oceanica)
TAGATTGTGGGGGGGTAGCGGTAGAGGACGAGTCGTGAGTCTTGTGCTTT
CGCTCTTTACACTACTTGTGTTGTCGCTTCGGCGAGGCCTCATCCTACAC
AACCTTATGCCACCCTGTCTGACGCAACACAAATACCAGTTACGAACAGG
AGGAACAACAAAACAAATATGGACCAGCCTTGACCAGGCGTGGTGCGCCC
ATTGGGATTGCCATAGCTGCAATCTTACTCCTTTCATGTCCCCGTCTTTA
CTACAGTAGTTCACGACGAGGCCCAGCCAAAACCCTTCACTACGTTGTGC
GAGCGACAGGAATATCTCATCCTCCTTATCTTACACGACACACATCACAA
ATTTGCAGCAATTCTTCGAGCTCCGGTTCTCTGAAGCGACAGCCATGGAC
CTCGAAGGAGGAGGTGGAGGAGGTAGCAGCTCGACCAGCACAAGCAACGC
CATCAATAACAATCTCCTCCTGGAAGGCCAAGAAGGAGAGGGCAACAGAT
CCGGGCGCCATATAGCTCTGCATCCTCTCGCCATCGTCACCATCTGTGAC
CACTGTACTCGGGTCAAAGTCGGTGGCTCCCTCCTACACCCTACCTCGCG
CATTCTTGGCATCCTCTTCGGTGTCCAAGACGGACTCCAAGTCTCCATCA
CAGACGCCTTTGAACTCCAATATGAGCTCTCCCCCGCTGGTGATGGCTCC
GTTCGAATCCCTCCTGGATACGTCAATGAAAAAAGGGAGCTCTTTGGGGC
GGTTCACCCCGGGGCGGAGGTCATGGGGTGGTATAGTGTGGGCGAAAGCA
TCTTACCCGGAGACCTCGAGATCCATCGGGCCATGTGCGAATGGAATGAG
TCGCCTTTTTTCTTGTTATTATCGCCCGCGGCATCGTCGGGTGGAGCGGG
GGCAGGAGTGGCGGCTGGGAGTGTGAAGGAGGGGGAGTTACCTGTACGAT
TGTTTGAGTCGGAATTGCATGTGTCTCGCGGGGTGCCGACCATGATGTTT
GTCAGGGTGCCCTTTCGCTTATCGGCAGCGGAGGCAGAGCGAATTAGTGT
GGAGCATGTCGTGAAAGCGGCGCCGATGGAGGGGGCGAGTAGCGTGGACT
TGCACGTCGATGGGGTAAGGACCAGTCTGAAGGCGTTAGTTTTGAGAGTG
AAGACGATTTTGAAGGTATTGGAGAGGTTGAAGGAGGGAGGGAAGGAGGG
AGGATTGAAGACAGAAGATTGGAAGTTGTTGAGGATGGTTGGATCGTTGT
GTGATTCGTTGCCTGCTGCGGGGCGCGAGGGGGGAAGGGGAGTGAGGGAA
TGGGAGGAGTCGTTCTTGAGGGAATATAGTGATAGTCTGGTTGTGACGTA
CCTGGCGAGTGTGAGTAAATTGTCGTGTCTGACTGGTGAAGTGAGTGAGA
AATTTGCGGTGGCCTTTGGGGAGGGCCGGGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GAGGGGGGGAAGAATCAGGCGCTGGAGAGGAGGGGGGGAGGAAGGGTGAA
ATCTGGGAAGGATCGAATATATTAGGATCGAAATGGCGCGAGAACGACGG
CATGAGGTGTCATTTGTTTGGTGGGGGGAAGAGGGGTGCTGGTGGTGGAG
TAAATGGAGTTAATGACAGAAAGGGCATTAGATCGCTTTTCTGCTGGGGG
GGGGTGGTTGCGGCCGGGAGGGAATGAAAGGGAGAGCCGCCGACGAGAGT
ATGAGGATTCGAGATCAGGGTATCAAATATGAGCAAATACAAAGCGCAAA
AGACGGTGAGGTTGCTGAGGGGATGTTATGAAAGGAAGAAAAAGAAGAGT
GTTTCACAGCCATACCCCCACTTTTGGAACAATCCTTGTGTCCCCCACTG
TCCTGTTGGTGTTCTGTGTTGCATACTGTAAATGGGGCTGCACGACCAAC
CTCGACAATTTAAGTTTGAAAGACGTGCCTGCACAGTCGATGATGAACCT
CAACACAAGAGGTGGGACACGAGCGGCCGCCAGCAACCTGTTGTTTACGC
TCGTTCCCATGTAATGTATTCTCTCCCTACCTAAGCAACTTTCATTTATA
TAAAT
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Coding sequence (CDS) from alignment at chr13:747599..749703-

>NO13G02720.1 ID=NO13G02720.1|Name=NO13G02720.1|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at chr13:747599..749703- (Nannochloropsis oceanica)
ATGGACCTCGAAGGAGGAGGTGGAGGAGGTAGCAGCTCGACCAGCACAAG
CAACGCCATCAATAACAATCTCCTCCTGGAAGGCCAAGAAGGAGAGGGCA
ACAGATCCGGGCGCCATATAGCTCTGCATCCTCTCGCCATCGTCACCATC
TGTGACCACTGTACTCGGGTCAAAGTCGGTGGCTCCCTCCTACACCCTAC
CTCGCGCATTCTTGGCATCCTCTTCGGTGTCCAAGACGGACTCCAAGTCT
CCATCACAGACGCCTTTGAACTCCAATATGAGCTCTCCCCCGCTGGTGAT
GGCTCCGTTCGAATCCCTCCTGGATACGTCAATGAAAAAAGGGAGCTCTT
TGGGGCGGTTCACCCCGGGGCGGAGGTCATGGGGTGGTATAGTGTGGGCG
AAAGCATCTTACCCGGAGACCTCGAGATCCATCGGGCCATGTGCGAATGG
AATGAGTCGCCTTTTTTCTTGTTATTATCGCCCGCGGCATCGTCGGGTGG
AGCGGGGGCAGGAGTGGCGGCTGGGAGTGTGAAGGAGGGGGAGTTACCTG
TACGATTGTTTGAGTCGGAATTGCATGTGTCTCGCGGGGTGCCGACCATG
ATGTTTGTCAGGGTGCCCTTTCGCTTATCGGCAGCGGAGGCAGAGCGAAT
TAGTGTGGAGCATGTCGTGAAAGCGGCGCCGATGGAGGGGGCGAGTAGCG
TGGACTTGCACGTCGATGGGGTAAGGACCAGTCTGAAGGCGTTAGTTTTG
AGAGTGAAGACGATTTTGAAGGTATTGGAGAGGTTGAAGGAGGGAGGGAA
GGAGGGAGGATTGAAGACAGAAGATTGGAAGTTGTTGAGGATGGTTGGAT
CGTTGTGTGATTCGTTGCCTGCTGCGGGGCGCGAGGGGGGAAGGGGAGTG
AGGGAATGGGAGGAGTCGTTCTTGAGGGAATATAGTGATAGTCTGGTTGT
GACGTACCTGGCGAGTGTGAGTAAATTGTCGTGTCTGACTGGTGAAGTGA
GTGAGAAATTTGCGGTGGCCTTTGGGGAGGGCCGGGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGAGGGGGGGAAGAATCAGGCGCTGGAGAGGAGGGGGGGAGGAAG
GGTGA
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Synonyms
Publications