NO13G02640.1, NO13G02640.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G02640.1
Unique Name	NO13G02640.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2089
Alignment location	chr13:728684..730772 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:728684..730772 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO13G02640.1 vs.

BLAST of NO13G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G02640	NO13G02640	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02640.1	NO13G02640.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G02640.1.cds1	NO13G02640.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:728684..730772+
coding sequence from alignment at chr13:728684..730772+

mRNA sequence

>NO13G02640.1 ID=NO13G02640.1|Name=NO13G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2089bp
TGTCAGGCCGCACATTCGCTTGAAGCACAAGCCAGTAGCGTCATACAGTG
TACTTTAACCGCGACCACTAACTTGCTGACTTTGTAATTGACCCTTAGCT
TCCCAACCACAATTACTTCACTTTCGGGGACGTATTGTATTGTAATACAC
ACTCACATTCTATGTATTCACTTCTTGCATCGTCTTCCCCGCAAACAGGC
CTGTGTATCTGCCAGACATTGAACGTTTGACAGCTTGACAAGGGGATGGT
CCATCCTTCCATGCGGCCAGACTCTGCTCGTCGTTCCACAGGCCAGCGTT
CTCGGCCGCCAGCACCACCATCAAGTCCACCCCCAGACTACATGGCGACG
TCGATCCCGATTCCATTCTATCCGTCATCGCTCCGTCCTCCCGCCAATCA
GCTACGACAAAGCCCTGATCCAGCTCCTATTCCTCCTGCTCCTACCCCGG
CTCTTTTGTCACCCGTCCCTCCGGTGCGCCCTCGACAAGCGACCCGCGCC
CATGTTAAGATCCGGCAGCGATTCGCGCTGCCTGCAGAACTCAAAGCAGT
ACTACAGGGCATGACTCCTCCCGAAAGACCTCGATTTATTGTCCCTACCC
GTCGAAGCTTCAGTGAAAAAGAGGACAAATGTGGAGATCGGAAGCGTCGC
CGACCTGCTTCCCTGCCAGTTCTCCACCCACCGGTGTCCGTGTCACAATG
CTCAGCAGTACCTCCAGAGATGGGCTACTTGGAAAACGCCATGGCCCGCC
TTTCCTTAGATCTACATGATTTCCAGCAGGAGCTTCGCACTCAACATCAC
TACGCCCCAGCGACGGCACCCTTGAGCTGCTGTATGGCCACAGCGCCCTC
TTACAGAGTCCTTTCCACAGCTGCGGCCTCCTTGCCCATACCCGAAAGGA
AAGGGGTCATGAAGCGCTGTGTCAACGACAACAGTGGTAACAATGGCAGC
TGCAGCAACAATAGCAACAACAATAGCGATAGCACCCAAAGGAGCAGAAG
AAATGGCGGCCCCAGGTTCACTGTGCGAACTGCAGACGGCACAGAGGTGG
TGCTTGACAATAGGGGCGTGGACAGCCGAATGGTGGAGATTCTAGTGGGG
GATTTAACTGGTGTTTATTGCACAGGTTCGCAAACGTACAATGTGCCACG
ATTAAGTACTCCTTCGCCATTGGGGAAGGCAGCGGCTTGCACCGCTACCA
CGCAGGATGTTTGTACCTCGCCATCCATGTCTTTATTGCCAACTCAAGCC
AGCGATGCAACGTCCGAGACTGAGGATGGTAGTGTGGCGTCGGCTGCGAG
CTCTGGTTGGTTCCAGAAGCAAGGGGTTCTACAGCAGCATGCTCCTCCAA
TTTTCTCCTCTTCTCCGTCTTTGAAGGTGGAAACGCGCTTTGGAACAGAT
GAGGTCGACGATGAGAATCACGACGACAACAACGGAGATGCTTTTTCCTC
CCCAGTAGCAGAGTCAACGAGTCTGTCGCTGGCGTCCTTGCCTATTGAAT
GGCCCGTGCCAGCGCCTTCCCCGCTACCCTCGCAGTCGCCTCACTCGCAG
TCGCCTCACTGCTTTTCGTCCCCAGAATCGTGCTTCTCCCCTTTTGTCCC
CGAGGGCCGAAGTGTGGAGAATGAGAGGGAGAAAGTGACTGTTGAGGAGG
AAGAGCAGAATCAGGACCAAGGGCAGGAAACAAGCATTTCCAAAAGCAGC
CGAAGCACCAGCCGGTGTAGCAGCTATTATTATGATTGCTCCTTTCCCTC
TATGTTAGTGGCGGGTGATGGTGATGAAGATGGGTACAGCACAGACTCCT
CCAGATCTTCCTCTTTCTCCTCTTGCTCGATGTCGTCCTCTTTTGCCTCC
TCCTCCTCTTCCTCTTCTCATTGCTCATCTTCCTCCTCCACCATTTCCGC
TTGCTGTCGCACAGTACTGGGAAGAGATCCTGCTTTTGGCGCCACTTCAA
CGTGCCCGATCCGTCTTTTACGTTGGTAATTCGCCATGAGGAAGAGAAAT
CTCGGGAAGACAGGCAAAGAAAATATCGTTGGTGATACATCACGAGGGGG
AAATGTCACCGAATTATTAAAAGATTAAAAGTAATAAGT

protein sequence of NO13G02640.1

>NO13G02640.1-protein ID=NO13G02640.1-protein|Name=NO13G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MVHPSMRPDSARRSTGQRSRPPAPPSSPPPDYMATSIPIPFYPSSLRPPA
NQLRQSPDPAPIPPAPTPALLSPVPPVRPRQATRAHVKIRQRFALPAELK
AVLQGMTPPERPRFIVPTRRSFSEKEDKCGDRKRRRPASLPVLHPPVSVS
QCSAVPPEMGYLENAMARLSLDLHDFQQELRTQHHYAPATAPLSCCMATA
PSYRVLSTAAASLPIPERKGVMKRCVNDNSGNNGSCSNNSNNNSDSTQRS
RRNGGPRFTVRTADGTEVVLDNRGVDSRMVEILVGDLTGVYCTGSQTYNV
PRLSTPSPLGKAAACTATTQDVCTSPSMSLLPTQASDATSETEDGSVASA
ASSGWFQKQGVLQQHAPPIFSSSPSLKVETRFGTDEVDDENHDDNNGDAF
SSPVAESTSLSLASLPIEWPVPAPSPLPSQSPHSQSPHCFSSPESCFSPF
VPEGRSVENEREKVTVEEEEQNQDQGQETSISKSSRSTSRCSSYYYDCSF
PSMLVAGDGDEDGYSTDSSRSSSFSSCSMSSSFASSSSSSSHCSSSSSTI
SACCRTVLGRDPAFGATSTCPIRLLRW*

mRNA from alignment at chr13:728684..730772+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G02640.1 ID=NO13G02640.1|Name=NO13G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2089bp|location=Sequence derived from alignment at chr13:728684..730772+ (Nannochloropsis oceanica)
TGTCAGGCCGCACATTCGCTTGAAGCACAAGCCAGTAGCGTCATACAGTG
TACTTTAACCGCGACCACTAACTTGCTGACTTTGTAATTGACCCTTAGCT
TCCCAACCACAATTACTTCACTTTCGGGGACGTATTGTATTGTAATACAC
ACTCACATTCTATGTATTCACTTCTTGCATCGTCTTCCCCGCAAACAGGC
CTGTGTATCTGCCAGACATTGAACGTTTGACAGCTTGACAAGGGGATGGT
CCATCCTTCCATGCGGCCAGACTCTGCTCGTCGTTCCACAGGCCAGCGTT
CTCGGCCGCCAGCACCACCATCAAGTCCACCCCCAGACTACATGGCGACG
TCGATCCCGATTCCATTCTATCCGTCATCGCTCCGTCCTCCCGCCAATCA
GCTACGACAAAGCCCTGATCCAGCTCCTATTCCTCCTGCTCCTACCCCGG
CTCTTTTGTCACCCGTCCCTCCGGTGCGCCCTCGACAAGCGACCCGCGCC
CATGTTAAGATCCGGCAGCGATTCGCGCTGCCTGCAGAACTCAAAGCAGT
ACTACAGGGCATGACTCCTCCCGAAAGACCTCGATTTATTGTCCCTACCC
GTCGAAGCTTCAGTGAAAAAGAGGACAAATGTGGAGATCGGAAGCGTCGC
CGACCTGCTTCCCTGCCAGTTCTCCACCCACCGGTGTCCGTGTCACAATG
CTCAGCAGTACCTCCAGAGATGGGCTACTTGGAAAACGCCATGGCCCGCC
TTTCCTTAGATCTACATGATTTCCAGCAGGAGCTTCGCACTCAACATCAC
TACGCCCCAGCGACGGCACCCTTGAGCTGCTGTATGGCCACAGCGCCCTC
TTACAGAGTCCTTTCCACAGCTGCGGCCTCCTTGCCCATACCCGAAAGGA
AAGGGGTCATGAAGCGCTGTGTCAACGACAACAGTGGTAACAATGGCAGC
TGCAGCAACAATAGCAACAACAATAGCGATAGCACCCAAAGGAGCAGAAG
AAATGGCGGCCCCAGGTTCACTGTGCGAACTGCAGACGGCACAGAGGTGG
TGCTTGACAATAGGGGCGTGGACAGCCGAATGGTGGAGATTCTAGTGGGG
GATTTAACTGGTGTTTATTGCACAGGTTCGCAAACGTACAATGTGCCACG
ATTAAGTACTCCTTCGCCATTGGGGAAGGCAGCGGCTTGCACCGCTACCA
CGCAGGATGTTTGTACCTCGCCATCCATGTCTTTATTGCCAACTCAAGCC
AGCGATGCAACGTCCGAGACTGAGGATGGTAGTGTGGCGTCGGCTGCGAG
CTCTGGTTGGTTCCAGAAGCAAGGGGTTCTACAGCAGCATGCTCCTCCAA
TTTTCTCCTCTTCTCCGTCTTTGAAGGTGGAAACGCGCTTTGGAACAGAT
GAGGTCGACGATGAGAATCACGACGACAACAACGGAGATGCTTTTTCCTC
CCCAGTAGCAGAGTCAACGAGTCTGTCGCTGGCGTCCTTGCCTATTGAAT
GGCCCGTGCCAGCGCCTTCCCCGCTACCCTCGCAGTCGCCTCACTCGCAG
TCGCCTCACTGCTTTTCGTCCCCAGAATCGTGCTTCTCCCCTTTTGTCCC
CGAGGGCCGAAGTGTGGAGAATGAGAGGGAGAAAGTGACTGTTGAGGAGG
AAGAGCAGAATCAGGACCAAGGGCAGGAAACAAGCATTTCCAAAAGCAGC
CGAAGCACCAGCCGGTGTAGCAGCTATTATTATGATTGCTCCTTTCCCTC
TATGTTAGTGGCGGGTGATGGTGATGAAGATGGGTACAGCACAGACTCCT
CCAGATCTTCCTCTTTCTCCTCTTGCTCGATGTCGTCCTCTTTTGCCTCC
TCCTCCTCTTCCTCTTCTCATTGCTCATCTTCCTCCTCCACCATTTCCGC
TTGCTGTCGCACAGTACTGGGAAGAGATCCTGCTTTTGGCGCCACTTCAA
CGTGCCCGATCCGTCTTTTACGTTGGTAATTCGCCATGAGGAAGAGAAAT
CTCGGGAAGACAGGCAAAGAAAATATCGTTGGTGATACATCACGAGGGGG
AAATGTCACCGAATTATTAAAAGATTAAAAGTAATAAGT

Coding sequence (CDS) from alignment at chr13:728684..730772+

>NO13G02640.1 ID=NO13G02640.1|Name=NO13G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at chr13:728684..730772+ (Nannochloropsis oceanica)
ATGGTCCATCCTTCCATGCGGCCAGACTCTGCTCGTCGTTCCACAGGCCA
GCGTTCTCGGCCGCCAGCACCACCATCAAGTCCACCCCCAGACTACATGG
CGACGTCGATCCCGATTCCATTCTATCCGTCATCGCTCCGTCCTCCCGCC
AATCAGCTACGACAAAGCCCTGATCCAGCTCCTATTCCTCCTGCTCCTAC
CCCGGCTCTTTTGTCACCCGTCCCTCCGGTGCGCCCTCGACAAGCGACCC
GCGCCCATGTTAAGATCCGGCAGCGATTCGCGCTGCCTGCAGAACTCAAA
GCAGTACTACAGGGCATGACTCCTCCCGAAAGACCTCGATTTATTGTCCC
TACCCGTCGAAGCTTCAGTGAAAAAGAGGACAAATGTGGAGATCGGAAGC
GTCGCCGACCTGCTTCCCTGCCAGTTCTCCACCCACCGGTGTCCGTGTCA
CAATGCTCAGCAGTACCTCCAGAGATGGGCTACTTGGAAAACGCCATGGC
CCGCCTTTCCTTAGATCTACATGATTTCCAGCAGGAGCTTCGCACTCAAC
ATCACTACGCCCCAGCGACGGCACCCTTGAGCTGCTGTATGGCCACAGCG
CCCTCTTACAGAGTCCTTTCCACAGCTGCGGCCTCCTTGCCCATACCCGA
AAGGAAAGGGGTCATGAAGCGCTGTGTCAACGACAACAGTGGTAACAATG
GCAGCTGCAGCAACAATAGCAACAACAATAGCGATAGCACCCAAAGGAGC
AGAAGAAATGGCGGCCCCAGGTTCACTGTGCGAACTGCAGACGGCACAGA
GGTGGTGCTTGACAATAGGGGCGTGGACAGCCGAATGGTGGAGATTCTAG
TGGGGGATTTAACTGGTGTTTATTGCACAGGTTCGCAAACGTACAATGTG
CCACGATTAAGTACTCCTTCGCCATTGGGGAAGGCAGCGGCTTGCACCGC
TACCACGCAGGATGTTTGTACCTCGCCATCCATGTCTTTATTGCCAACTC
AAGCCAGCGATGCAACGTCCGAGACTGAGGATGGTAGTGTGGCGTCGGCT
GCGAGCTCTGGTTGGTTCCAGAAGCAAGGGGTTCTACAGCAGCATGCTCC
TCCAATTTTCTCCTCTTCTCCGTCTTTGAAGGTGGAAACGCGCTTTGGAA
CAGATGAGGTCGACGATGAGAATCACGACGACAACAACGGAGATGCTTTT
TCCTCCCCAGTAGCAGAGTCAACGAGTCTGTCGCTGGCGTCCTTGCCTAT
TGAATGGCCCGTGCCAGCGCCTTCCCCGCTACCCTCGCAGTCGCCTCACT
CGCAGTCGCCTCACTGCTTTTCGTCCCCAGAATCGTGCTTCTCCCCTTTT
GTCCCCGAGGGCCGAAGTGTGGAGAATGAGAGGGAGAAAGTGACTGTTGA
GGAGGAAGAGCAGAATCAGGACCAAGGGCAGGAAACAAGCATTTCCAAAA
GCAGCCGAAGCACCAGCCGGTGTAGCAGCTATTATTATGATTGCTCCTTT
CCCTCTATGTTAGTGGCGGGTGATGGTGATGAAGATGGGTACAGCACAGA
CTCCTCCAGATCTTCCTCTTTCTCCTCTTGCTCGATGTCGTCCTCTTTTG
CCTCCTCCTCCTCTTCCTCTTCTCATTGCTCATCTTCCTCCTCCACCATT
TCCGCTTGCTGTCGCACAGTACTGGGAAGAGATCCTGCTTTTGGCGCCAC
TTCAACGTGCCCGATCCGTCTTTTACGTTGGTAA

Synonyms

Publications