NO13G01870.1, NO13G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01870.1
Unique NameNO13G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1008
Alignment locationchr13:546392..547399 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:546392..547399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01870.1 vs.
Match: EWM21835.1 (arabinose 5-phosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 400.6 bits (1028), Expect = 4.800e-108
Identity = 223/318 (70.13%), Postives = 259/318 (81.45%), Query Frame = 0 
Query:    1 MVASLHAHGYPSNQEGLLRMGRVAAAAGAACVEVKGALPTPGKSAARVLQLAGNAQPLVDAAALLDMELSQSSSVSSTEAVAALTAGLKGRSPVIQAYARSLDADARALKALSTGLSLHEKEDKIKKVIDLLAEAHTNSPKKTHIYTSGIGKSGLVAARLASSLRSISIRSSHVPATDFVHGDMGSLARGDVLVCLSSSGKTNELIDATRRVRARGVDVIAITRNPSSPLAQLADIHIHAKSTSELLGKIPSRSIVVNEAVSNAFVSGVAAATHFTVLDFLDNHPGGSIGAAVSSSLASTASCTTSSSTGVVGPPPVP 319
            MVASLHA G+P   +GLL MG+VAAAAGAACVEVKGALP P KS ARVLQLA  AQPL DAAALLDM +S S   + +EA  AL AG+K RSP +QAYARSL+ D RAL+ LS GL+LHEKED I +V++LLA AHT + KKTHIYTSGIGKSGLVAARLASSLRSISIRSSHVPAT+FVHGD+GSL+RGDVLVCLS+SG+T+ELID TRRVRA+GVDVIA+T N +SPLAQLAD+H+HAKS +E LGK+P+RSIVV EAVSNA +S +A AT  T+  FLDNHPGGSIG    SSLA+ +S TT+ +       P P
Sbjct:  317 MVASLHAQGFPETADGLLSMGKVAAAAGAACVEVKGALPHPQKSVARVLQLAPEAQPLADAAALLDMGVSPSPDSTLSEAATALVAGVKQRSPSVQAYARSLEEDVRALRTLSAGLALHEKEDTIARVVELLAAAHTTTSKKTHIYTSGIGKSGLVAARLASSLRSISIRSSHVPATEFVHGDLGSLSRGDVLVCLSTSGRTSELIDVTRRVRAKGVDVIAMTANAASPLAQLADVHLHAKS-AEPLGKVPARSIVVQEAVSNAIISAIAQATSLTMAQFLDNHPGGSIG---QSSLATPSSTTTAPAARASSSSPSP 630
The following BLAST results are available for this feature:
BLAST of NO13G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21835.14.800e-10870.13arabinose 5-phosphate isomerase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01870NO13G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01870.1NO13G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01870.1.cds1NO13G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01870.1 ID=NO13G01870.1|Name=NO13G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
ATGGTGGCTAGTTTGCACGCGCATGGGTACCCTAGCAATCAGGAGGGGTT
GTTGCGGATGGGGAGGGTGGCAGCCGCAGCGGGAGCAGCGTGTGTGGAAG
TGAAGGGAGCTTTGCCAACGCCGGGAAAGAGTGCAGCAAGGGTGTTGCAG
CTTGCAGGGAACGCGCAGCCGCTGGTTGATGCAGCTGCTTTGTTGGATAT
GGAGTTGAGTCAGAGTTCATCCGTGTCGTCAACAGAGGCTGTGGCAGCGT
TGACTGCTGGATTAAAGGGTCGCTCTCCTGTTATTCAGGCATATGCGAGG
AGTCTGGACGCGGACGCACGGGCGCTCAAGGCACTGAGTACTGGTTTGTC
ATTGCATGAGAAGGAGGATAAGATTAAGAAGGTGATTGACTTGCTTGCGG
AAGCACACACGAACTCGCCCAAAAAAACACACATTTATACCAGTGGGATT
GGAAAGAGTGGCTTGGTTGCCGCGCGGCTCGCCTCCAGCCTGCGGTCTAT
CTCCATCCGGAGTAGCCATGTCCCGGCCACTGACTTCGTGCATGGAGACA
TGGGGTCTCTTGCGCGAGGCGATGTCTTGGTCTGCCTCTCCTCCTCTGGG
AAAACCAACGAATTAATCGACGCCACTCGACGTGTCCGCGCAAGAGGAGT
GGACGTCATCGCAATCACCCGGAACCCATCTTCGCCCCTCGCCCAGCTTG
CCGATATCCACATACACGCCAAAAGTACTTCGGAATTGCTTGGGAAAATC
CCCTCAAGGTCAATTGTGGTCAATGAAGCAGTGAGCAATGCATTTGTGTC
TGGTGTGGCGGCAGCGACTCATTTCACCGTCTTGGATTTCCTCGACAACC
ATCCTGGGGGGAGCATTGGGGCGGCGGTTTCATCCTCTTTGGCTTCTACT
GCTTCCTGCACCACCTCATCATCTACGGGCGTGGTCGGACCACCGCCTGT
GCCAGGTACTGCAGCTACTGCTTCTTCATCCTCATCGTCGGCGTTGTCGA
GGCCTTAA
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protein sequence of NO13G01870.1

>NO13G01870.1-protein ID=NO13G01870.1-protein|Name=NO13G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MVASLHAHGYPSNQEGLLRMGRVAAAAGAACVEVKGALPTPGKSAARVLQ
LAGNAQPLVDAAALLDMELSQSSSVSSTEAVAALTAGLKGRSPVIQAYAR
SLDADARALKALSTGLSLHEKEDKIKKVIDLLAEAHTNSPKKTHIYTSGI
GKSGLVAARLASSLRSISIRSSHVPATDFVHGDMGSLARGDVLVCLSSSG
KTNELIDATRRVRARGVDVIAITRNPSSPLAQLADIHIHAKSTSELLGKI
PSRSIVVNEAVSNAFVSGVAAATHFTVLDFLDNHPGGSIGAAVSSSLAST
ASCTTSSSTGVVGPPPVPGTAATASSSSSSALSRP*
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mRNA from alignment at chr13:546392..547399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01870.1 ID=NO13G01870.1|Name=NO13G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp|location=Sequence derived from alignment at chr13:546392..547399- (Nannochloropsis oceanica)
ATGGTGGCTAGTTTGCACGCGCATGGGTACCCTAGCAATCAGGAGGGGTT
GTTGCGGATGGGGAGGGTGGCAGCCGCAGCGGGAGCAGCGTGTGTGGAAG
TGAAGGGAGCTTTGCCAACGCCGGGAAAGAGTGCAGCAAGGGTGTTGCAG
CTTGCAGGGAACGCGCAGCCGCTGGTTGATGCAGCTGCTTTGTTGGATAT
GGAGTTGAGTCAGAGTTCATCCGTGTCGTCAACAGAGGCTGTGGCAGCGT
TGACTGCTGGATTAAAGGGTCGCTCTCCTGTTATTCAGGCATATGCGAGG
AGTCTGGACGCGGACGCACGGGCGCTCAAGGCACTGAGTACTGGTTTGTC
ATTGCATGAGAAGGAGGATAAGATTAAGAAGGTGATTGACTTGCTTGCGG
AAGCACACACGAACTCGCCCAAAAAAACACACATTTATACCAGTGGGATT
GGAAAGAGTGGCTTGGTTGCCGCGCGGCTCGCCTCCAGCCTGCGGTCTAT
CTCCATCCGGAGTAGCCATGTCCCGGCCACTGACTTCGTGCATGGAGACA
TGGGGTCTCTTGCGCGAGGCGATGTCTTGGTCTGCCTCTCCTCCTCTGGG
AAAACCAACGAATTAATCGACGCCACTCGACGTGTCCGCGCAAGAGGAGT
GGACGTCATCGCAATCACCCGGAACCCATCTTCGCCCCTCGCCCAGCTTG
CCGATATCCACATACACGCCAAAAGTACTTCGGAATTGCTTGGGAAAATC
CCCTCAAGGTCAATTGTGGTCAATGAAGCAGTGAGCAATGCATTTGTGTC
TGGTGTGGCGGCAGCGACTCATTTCACCGTCTTGGATTTCCTCGACAACC
ATCCTGGGGGGAGCATTGGGGCGGCGGTTTCATCCTCTTTGGCTTCTACT
GCTTCCTGCACCACCTCATCATCTACGGGCGTGGTCGGACCACCGCCTGT
GCCAGGTACTGCAGCTACTGCTTCTTCATCCTCATCGTCGGCGTTGTCGA
GGCCTTAA
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Coding sequence (CDS) from alignment at chr13:546392..547399-

>NO13G01870.1 ID=NO13G01870.1|Name=NO13G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at chr13:546392..547399- (Nannochloropsis oceanica)
ATGGTGGCTAGTTTGCACGCGCATGGGTACCCTAGCAATCAGGAGGGGTT
GTTGCGGATGGGGAGGGTGGCAGCCGCAGCGGGAGCAGCGTGTGTGGAAG
TGAAGGGAGCTTTGCCAACGCCGGGAAAGAGTGCAGCAAGGGTGTTGCAG
CTTGCAGGGAACGCGCAGCCGCTGGTTGATGCAGCTGCTTTGTTGGATAT
GGAGTTGAGTCAGAGTTCATCCGTGTCGTCAACAGAGGCTGTGGCAGCGT
TGACTGCTGGATTAAAGGGTCGCTCTCCTGTTATTCAGGCATATGCGAGG
AGTCTGGACGCGGACGCACGGGCGCTCAAGGCACTGAGTACTGGTTTGTC
ATTGCATGAGAAGGAGGATAAGATTAAGAAGGTGATTGACTTGCTTGCGG
AAGCACACACGAACTCGCCCAAAAAAACACACATTTATACCAGTGGGATT
GGAAAGAGTGGCTTGGTTGCCGCGCGGCTCGCCTCCAGCCTGCGGTCTAT
CTCCATCCGGAGTAGCCATGTCCCGGCCACTGACTTCGTGCATGGAGACA
TGGGGTCTCTTGCGCGAGGCGATGTCTTGGTCTGCCTCTCCTCCTCTGGG
AAAACCAACGAATTAATCGACGCCACTCGACGTGTCCGCGCAAGAGGAGT
GGACGTCATCGCAATCACCCGGAACCCATCTTCGCCCCTCGCCCAGCTTG
CCGATATCCACATACACGCCAAAAGTACTTCGGAATTGCTTGGGAAAATC
CCCTCAAGGTCAATTGTGGTCAATGAAGCAGTGAGCAATGCATTTGTGTC
TGGTGTGGCGGCAGCGACTCATTTCACCGTCTTGGATTTCCTCGACAACC
ATCCTGGGGGGAGCATTGGGGCGGCGGTTTCATCCTCTTTGGCTTCTACT
GCTTCCTGCACCACCTCATCATCTACGGGCGTGGTCGGACCACCGCCTGT
GCCAGGTACTGCAGCTACTGCTTCTTCATCCTCATCGTCGGCGTTGTCGA
GGCCTTAA
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Synonyms
Publications