NO13G01190.1, NO13G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G01190.1
Unique NameNO13G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length636
Alignment locationchr13:364392..365027 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:364392..365027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO13G01190.1 vs.
Match: EWM21791.1 (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 310.5 bits (794), Expect = 4.100e-81
Identity = 166/213 (77.93%), Postives = 186/213 (87.32%), Query Frame = 0 
Query:    1 MEGLCVDLYDRLLQPMRQAALMAGATLAGEVAPDALGGQLIGSMEEGGKGIVREVMMR--ELAEMDGEEMVSDKKKLAELMRERALKGRQVSKARSNYNKNLNAVRKRNPGLKIREFPQGRVIEEVVMVGGATRMPSIQRLVEAVTGRKPRVTVNPDEAVALGAGIHAGVLDGTIEDMDMMTPMQAAIARGLMDFQARGGQKGPRSQKQKKGF 212
            ME LC DLYDRLL+PMRQAALMAGATL GEVAPDALGGQL+ ++ +GG+    EV+MR  ELA  D E M S+K+KLA LMRERA+ GR+VSKARS Y+KNLNAVRKRNPGLKIREFPQGR I+EVVMVGGATRMPSI+RLV AVTG  PR TV+PDEAVALGAGIHAGVLDG IEDMDM+TPMQAAIARGL+D++AR GQ GPRSQKQ+KGF
Sbjct:  780 MEKLCGDLYDRLLEPMRQAALMAGATLGGEVAPDALGGQLVDALGDGGEKAAMEVLMRDQELAAADAEGMESEKEKLAALMRERAMTGRKVSKARSMYSKNLNAVRKRNPGLKIREFPQGRSIQEVVMVGGATRMPSIRRLVAAVTGITPRTTVDPDEAVALGAGIHAGVLDGIIEDMDMLTPMQAAIARGLLDYEARAGQAGPRSQKQRKGF 992
The following BLAST results are available for this feature:
BLAST of NO13G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21791.14.100e-8177.93chaperone protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G01190NO13G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G01190.1NO13G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G01190.1.cds1NO13G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G01190.1 ID=NO13G01190.1|Name=NO13G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=636bp
ATGGAGGGGTTGTGTGTAGACTTGTACGACCGGTTATTACAGCCGATGAG
GCAGGCGGCGTTGATGGCGGGAGCAACATTGGCGGGGGAGGTGGCCCCGG
ATGCGCTGGGAGGGCAGTTGATTGGTTCAATGGAGGAGGGGGGGAAGGGT
ATCGTGAGGGAGGTGATGATGAGGGAGCTGGCGGAAATGGATGGGGAGGA
GATGGTGAGTGATAAGAAGAAGCTGGCAGAACTCATGAGGGAGAGAGCAT
TGAAAGGGCGGCAAGTGAGTAAGGCCCGGAGCAATTACAACAAGAATTTG
AATGCGGTAAGGAAAAGAAACCCGGGGTTGAAGATAAGGGAGTTCCCGCA
GGGGAGAGTGATCGAGGAGGTGGTTATGGTGGGAGGGGCGACCAGGATGC
CCTCGATACAGCGCTTGGTTGAAGCAGTCACGGGGCGAAAGCCGCGTGTA
ACGGTTAATCCTGACGAGGCCGTTGCTCTCGGGGCGGGAATTCATGCGGG
GGTGCTGGATGGGACGATTGAGGATATGGATATGATGACTCCGATGCAGG
CTGCAATCGCGAGAGGGTTGATGGACTTCCAGGCACGAGGAGGACAGAAA
GGCCCTCGGTCACAGAAGCAGAAAAAGGGCTTTTAG
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protein sequence of NO13G01190.1

>NO13G01190.1-protein ID=NO13G01190.1-protein|Name=NO13G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MEGLCVDLYDRLLQPMRQAALMAGATLAGEVAPDALGGQLIGSMEEGGKG
IVREVMMRELAEMDGEEMVSDKKKLAELMRERALKGRQVSKARSNYNKNL
NAVRKRNPGLKIREFPQGRVIEEVVMVGGATRMPSIQRLVEAVTGRKPRV
TVNPDEAVALGAGIHAGVLDGTIEDMDMMTPMQAAIARGLMDFQARGGQK
GPRSQKQKKGF*
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mRNA from alignment at chr13:364392..365027+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G01190.1 ID=NO13G01190.1|Name=NO13G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=636bp|location=Sequence derived from alignment at chr13:364392..365027+ (Nannochloropsis oceanica)
ATGGAGGGGTTGTGTGTAGACTTGTACGACCGGTTATTACAGCCGATGAG
GCAGGCGGCGTTGATGGCGGGAGCAACATTGGCGGGGGAGGTGGCCCCGG
ATGCGCTGGGAGGGCAGTTGATTGGTTCAATGGAGGAGGGGGGGAAGGGT
ATCGTGAGGGAGGTGATGATGAGGGAGCTGGCGGAAATGGATGGGGAGGA
GATGGTGAGTGATAAGAAGAAGCTGGCAGAACTCATGAGGGAGAGAGCAT
TGAAAGGGCGGCAAGTGAGTAAGGCCCGGAGCAATTACAACAAGAATTTG
AATGCGGTAAGGAAAAGAAACCCGGGGTTGAAGATAAGGGAGTTCCCGCA
GGGGAGAGTGATCGAGGAGGTGGTTATGGTGGGAGGGGCGACCAGGATGC
CCTCGATACAGCGCTTGGTTGAAGCAGTCACGGGGCGAAAGCCGCGTGTA
ACGGTTAATCCTGACGAGGCCGTTGCTCTCGGGGCGGGAATTCATGCGGG
GGTGCTGGATGGGACGATTGAGGATATGGATATGATGACTCCGATGCAGG
CTGCAATCGCGAGAGGGTTGATGGACTTCCAGGCACGAGGAGGACAGAAA
GGCCCTCGGTCACAGAAGCAGAAAAAGGGCTTTTAG
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Coding sequence (CDS) from alignment at chr13:364392..365027+

>NO13G01190.1 ID=NO13G01190.1|Name=NO13G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at chr13:364392..365027+ (Nannochloropsis oceanica)
ATGGAGGGGTTGTGTGTAGACTTGTACGACCGGTTATTACAGCCGATGAG
GCAGGCGGCGTTGATGGCGGGAGCAACATTGGCGGGGGAGGTGGCCCCGG
ATGCGCTGGGAGGGCAGTTGATTGGTTCAATGGAGGAGGGGGGGAAGGGT
ATCGTGAGGGAGGTGATGATGAGGGAGCTGGCGGAAATGGATGGGGAGGA
GATGGTGAGTGATAAGAAGAAGCTGGCAGAACTCATGAGGGAGAGAGCAT
TGAAAGGGCGGCAAGTGAGTAAGGCCCGGAGCAATTACAACAAGAATTTG
AATGCGGTAAGGAAAAGAAACCCGGGGTTGAAGATAAGGGAGTTCCCGCA
GGGGAGAGTGATCGAGGAGGTGGTTATGGTGGGAGGGGCGACCAGGATGC
CCTCGATACAGCGCTTGGTTGAAGCAGTCACGGGGCGAAAGCCGCGTGTA
ACGGTTAATCCTGACGAGGCCGTTGCTCTCGGGGCGGGAATTCATGCGGG
GGTGCTGGATGGGACGATTGAGGATATGGATATGATGACTCCGATGCAGG
CTGCAATCGCGAGAGGGTTGATGGACTTCCAGGCACGAGGAGGACAGAAA
GGCCCTCGGTCACAGAAGCAGAAAAAGGGCTTTTAG
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Synonyms
Publications