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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:205801..210015 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00610.1 vs.
Match: CBJ32712.1 (Branched chain alpha-keto acid dehydrogenase E1 beta subunit [Ectocarpus siliculosus]) HSP 1 Score: 542.3 bits (1396), Expect = 1.100e-150 Identity = 254/322 (78.88%), Postives = 288/322 (89.44%), Query Frame = 0
Query: 46 RMNLFTAINDALRTAMDTDQSAIIFGEDVAFGGVFRCTVGLREDFGDGRVFNTPLCEQGIAGFGIGYASLGKTAIAEIQFADYIFPAFDQLVNEAAKFRYRSGNQFNCGGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGLLLSSIRAPDPVIFLEPKALYRAAVEEVPEGDYTIPLGRADVLREGRDVTVVGWGGQLRVLEKACDLAADEGIACELIDLRTLLPWDADTVMASVHKTGRLVVSHEAPKTGGFAAEVVAEMQERCFLFLEAPVQRVCGYDTPFPLVFEKYYVPDAYKNLEAIKKAVHF 368
RMNLFTA+N LRTAM+TD +AI+FGEDVAFGGVFRCT GL+E FG RVF++ LCEQGIAGF IGYAS+GKTAIAEIQFADYIFPAFDQ+VNEAAKFRYRSG+QFNCGGLT+RAPCGAVGHGGHYHSQSPE+YF HTPGLKVVMPR+ EAKGLLL+S+R PDPVIF EPK LYR +VE+VP+GDY +PLG ADV+REG DVT+VGWG QLRV+ +ACD A EGI+CELIDLRT+LPWD DTV SV KTGRLVVSHEAP+TGGFAAEV A+MQERCFL LEAPVQRVCGYDTPFPLVFEK+YVP +K L+A++ AV++
Sbjct: 130 RMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKVVMPRNATEAKGLLLASVREPDPVIFFEPKILYRTSVEDVPDGDYEVPLGVADVMREGTDVTLVGWGAQLRVMSEACDDAEKEGISCELIDLRTILPWDFDTVSRSVKKTGRLVVSHEAPRTGGFAAEVAADMQERCFLHLEAPVQRVCGYDTPFPLVFEKFYVPGRFKVLDAVRDAVNY 451
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00610.1 ID=NO13G00610.1|Name=NO13G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2691bp TCCCAGCGCTCCACCTCTTTCTTCTCCTCCTCCCTCTTCTACTCCTACTG GTGCTAGTACTGCAGCTGCTACCGCTGTTTCGCTTCGTAGAGTTACGGTA GAACCTGGCGCACTTCCTCGACTTCCTTCTTCTTTCCACCCTCCCTCTTC CTCTCCCTTCTCCTCCTCCTCATTGGAATCCTCGTCTTCCAAGTGTAAGA CCGCCAACGTTAGATGCAACTTGGATGGGGATACCATTGCCTCCTCCAGT GTCGGGCCGTGCATCTCTATCATTTCGTCTTGGATCGACTTAATACTAGA ATGAAGGGAGGGAGAGGAGAGCTTGACTGCGAGGAAGTGGGTTGGGCGGG AAGGAGGAGGAGAAGGATGGAAGCGCTTGTGCTGTTGGCGATTTATGTTT TGCTGTGCTTGTGAGTCTTGCAGGCTCACGTTCTCTTCTGTGTGCCACGA GGGGTTTTGGAACTTCGAGGGGGTAAAGTCACAGGAGGACGAGGGGGAAG AAGAGAGGTGGGCAATAGAATTCTGCATTGTCCTTTTCCACGGATGCAAT GAGAGGATAAAAGATGAAAGTGGGCCGGCAAAGGGGGATTGGCGAAAATG CGGTGCGCCGGAAGAAGGCAATGACGACGACGAGGAGGAGAGGATGAGAA GGCTAGCGAGCAGGGTCCGGGAGAGGGGAGGAGAACGAGGAGCTATTGGC TTGAGTCTAGGCTCGGCACGGAATACCAAGGAAAGAGGAACCTTACAGGA GGAGAGGGACTCGAGGTGCATTCACCCGCCTGCGGTGACGATGAATGTGC GGGATGTGGGAGGGGAGAGGAGAGGACGAGTGAATAAGGTGTGTCTTTGG CAAGTGTAATTGCTCGGCGCGGCATGAAGAGGTCTTGGTTTGCATTTTAA TTCTCATCTCACTCCATTTCCCCGGTGATGCTTGAGTGACCCTGCAAGAT GGCACAGGGGGAGGGAGGAGACGTCAAGTTGGGGAGGGGGGAGGCTAAAA CATTTACGGGCGGTCCATACGCGCAAAGCGATCCGAGTCCGAGGGGCTGG AGGCTGTCAATAAGAGTGACAGTGCCAACTCTCTTCTCGCTTTGGTGTCA CTGGTGGTAGTGATGGTCCAGCGTAGGGACTCGTAGCTTTGTAAGGGGTG TTGTGAAGGGGGGAATGGGGAGGTCGTCTGATAACCGACGTCACTGTGTC AACAACCCCGCCTATTCTGCGCCTCTTTGCTGGGACCAGGGCCAAATACA CGCACATTTATGTTCAACAGCGTCCTAACATAATCTCCCTACACCCTAAA ATCTATGCACGGGCATTCTATCTGCGCTTTTAAACCCAACCACAGGCCGA CAGCGGCAAAAATTGGGCAGTGCAGCAGAAGGTCGCACAAAGCACATCAA CGCAAGCAGGCGTCTCACAAAAACCCTCTGCCGGAACACCGTGGACGAGA TCCAGAACTACATCCACGCTCGTGCATGCACTATGCAAGGCATTGCGTTC CTTTCTACCGTCGCAGGGACTGCACGGGCTCCCGGACGCCTGCGTCGTCG GCTGCTTTCTTCGAGCCTCCGCACGACGACACGCAGCTACACCCCGGCTG CAGGTGTAATGACGAAGCGGATGAACTTGTTCACGGCCATCAATGATGCC TTGCGCACAGCCATGGACACGGACCAGAGCGCGATTATTTTCGGGGAGGA CGTGGCCTTTGGCGGCGTATTCCGTTGCACTGTGGGTTTGCGCGAAGATT TCGGAGATGGCCGGGTCTTTAATACGCCCTTGTGCGAGCAAGGGATCGCC GGCTTTGGGATCGGGTATGCCTCGTTGGGGAAGACAGCAATTGCCGAGAT TCAATTTGCTGATTATATTTTCCCGGCTTTTGATCAGCTCGTTAACGAGG CCGCCAAATTTCGGTACCGCTCCGGCAATCAATTCAATTGTGGGGGCCTG ACGGTCCGAGCGCCCTGTGGAGCCGTCGGTCATGGGGGGCATTACCACTC TCAGTCGCCCGAGGCGTATTTCACCCACACACCAGGCCTTAAGGTGGTGA TGCCTCGTTCTCCTGCTGAGGCGAAGGGGCTCCTCCTCTCTTCTATTCGC GCGCCAGATCCCGTCATTTTCCTAGAGCCAAAGGCACTGTACCGCGCTGC GGTGGAGGAGGTCCCGGAAGGCGACTACACCATCCCCCTCGGACGGGCGG ACGTGCTGCGGGAGGGTCGTGACGTCACGGTGGTGGGATGGGGAGGGCAA CTGAGGGTGCTGGAGAAGGCCTGCGACTTGGCCGCTGATGAAGGGATAGC CTGCGAGCTCATCGATCTTCGGACTCTCTTGCCTTGGGACGCAGACACCG TCATGGCCTCGGTCCACAAAACGGGCCGGCTGGTGGTTAGCCATGAGGCG CCTAAAACAGGGGGTTTTGCCGCTGAAGTAGTGGCTGAGATGCAAGAGCG ATGTTTTCTTTTTTTGGAGGCTCCGGTGCAGCGTGTGTGCGGGTACGACA CGCCTTTCCCTTTGGTGTTCGAAAAGTACTACGTTCCGGACGCTTACAAA AACCTGGAGGCGATCAAGAAGGCAGTTCACTTCTGACAGCCGGGGGAAGG GAGGGAGGGGGGAGGGAGGAAGGTGTTTTTACTGTATGTTGTGTATATAA AATTATCAGGCGAATGACGAGAGGGCGTGACGGAATAGGGG back to topprotein sequence of NO13G00610.1 >NO13G00610.1-protein ID=NO13G00610.1-protein|Name=NO13G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp MQGIAFLSTVAGTARAPGRLRRRLLSSSLRTTTRSYTPAAGVMTKRMNLF TAINDALRTAMDTDQSAIIFGEDVAFGGVFRCTVGLREDFGDGRVFNTPL CEQGIAGFGIGYASLGKTAIAEIQFADYIFPAFDQLVNEAAKFRYRSGNQ FNCGGLTVRAPCGAVGHGGHYHSQSPEAYFTHTPGLKVVMPRSPAEAKGL LLSSIRAPDPVIFLEPKALYRAAVEEVPEGDYTIPLGRADVLREGRDVTV VGWGGQLRVLEKACDLAADEGIACELIDLRTLLPWDADTVMASVHKTGRL VVSHEAPKTGGFAAEVVAEMQERCFLFLEAPVQRVCGYDTPFPLVFEKYY VPDAYKNLEAIKKAVHF* back to topmRNA from alignment at chr13:205801..210015+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00610.1 ID=NO13G00610.1|Name=NO13G00610.1|organism=Nannochloropsis oceanica|type=mRNA|length=4215bp|location=Sequence derived from alignment at chr13:205801..210015+ (Nannochloropsis oceanica) TCCCAGCGCTCCACCTCTTTCTTCTCCTCCTCCCTCTTCTACTCCTACTG
GTGCTAGTACTGCAGCTGCTACCGCTGTTTCGCTTCGTAGAGTTACGGTA
GAACCTGGCGCACTTCCTCGACTTCCTTCTTCTTTCCACCCTCCCTCTTC
CTCTCCCTTCTCCTCCTCCTCATTGGAATCCTCGTCTTCCAAGTGTAAGA
CCGCCAACGTTAGATGCAACTTGGATGGGGATACCATTGCCTCCTCCAGT
GTCGGGCCGTGCATCTCTATCATTTCGTCTTGGATCGACTTAATACTAGA
ATGAAGGGAGGGAGAGGAGAGCTTGACTGCGAGGAAGTGGGTTGGGCGGG
AAGGAGGAGGAGAAGGATGGAAGCGCTTGTGCTGTTGGCGATTTATGTTT
TGCTGTGCTTGTGAGTCTTGCAGGCTCACGTTCTCTTCTGTGTGCCACGA
GGGGTTTTGGAACTTCGAGGGGGTAAAGTCACAGGAGGACGAGGGGGAAG
AAGAGAGGTGGGCAATAGAATTCTGCATTGTCCTTTTCCACGGATGCAAT
GAGAGGATAAAAGATGAAAGTGGGCCGGCAAAGGGGGATTGGCGAAAATG
CGGTGCGCCGGAAGAAGGCAATGACGACGACGAGGAGGAGAGGATGAGAA
GGCTAGCGAGCAGGGTCCGGGAGAGGGGAGGAGAACGAGGAGCTATTGGC
TTGAGTCTAGGCTCGGCACGGAATACCAAGGAAAGAGGAACCTTACAGGA
GGAGAGGGACTCGAGGTGCATTCACCCGCCTGCGGTGACGATGAATGTGC
GGGATGTGGGAGGGGAGAGGAGAGGACGAGTGAATAAGGTGTGTCTTTGG
CAAGTGTAATTGCTCGGCGCGGCATGAAGAGGTCTTGGTTTGCATTTTAA
TTCTCATCTCACTCCATTTCCCCGGTGATGCTTGAGTGACCCTGCAAGAT
GGCACAGGGGGAGGGAGGAGACGTCAAGTTGGGGAGGGGGGAGGCTAAAA
CATTTACGGGCGGTCCATACGCGCAAAGCGATCCGAGTCCGAGGGGCTGG
AGGCTGTCAATAAGAGTGACAGTGCCAACTCTCTTCTCGCTTTGGTGTCA
CTGGTGGTAGTGATGGTCCAGCGTAGGGACTCGTAGCTTTGTAAGGGGTG
TTGTGAAGGGGGGAATGGGGAGGTCGTCTGATAACCGACGTCACTGTGTC
AACAACCCCGCCTATTCTGCGCCTCTTTGCTGGGACCAGGGCCAAATACA
CGCACATTTATGTTCAACAGCGTCCTAACATAATCTCCCTACACCCTAAA
ATCTATGCACGGGCATTCTATCTGCGCTTTTAAACCCAACCACAGGCCGA
CAGCGGCAAAAATTGGGCAGTGCAGCAGAAGGTCGCACAAAGCACATCAA
CGCAAGCAGGCGTCTCACAAAAACCCTCTGCCGGAACACCGTGGACGAGA
TCCAGAACTACATCCACGCTCGTGCATGCACTATGCAAGGCATTGCGTTC
CTTTCTACCGTCGCAGGGACTGCACGGGCTCCCGGACGCCTGCGTCGTCG
GCTGCTTTCTTCGAGCCTCCGCACGGTACGTGGGGGTTTATGGGCATGTC
CTCGACCCCTCCCTTCTCCTCATTCTTGTCATCTCCAACACGAATACCGG
CAGACGACACGCAGCTACACCCCGGCTGCAGGTGTAATGACGAAGCGGAT
GAACTTGTTCACGGCCATCAATGATGCCTTGCGCACAGCCATGGACACGG
ACCAGAGCGCGGTATGTCGCAAGGAGAGGGGAGGAGAAGCAAGAAAGGAG
GAAGGAATGGGAGGGCTTAGAGACAGGAAGAGAATACTTTCGCTGAATTT
ATTACTGGAGCTACGTTCAAATGTGTCTGTGCATCCCGGCTCCACTCTCA
TCCACCCTTTGTTCCCCCCTTCTTCCACCCTCTCACAGATTATTTTCGGG
GAGGACGTGGCCTTTGGCGGCGTATTCCGTTGCACTGTGGGTTTGCGCGA
AGATTTCGGAGATGGCCGGGTCTTTAATACGCCCTTGTGCGAGCAAGTAA
GGATTTCTTGGGGGCGATTGACCAAGAGCTGGAGCTTGAGCCCCATCCCC
CCCCCCACCCTCCCCCCCTCCCATCCTCCCAGGGGATCGCCGGCTTTGGG
ATCGGGTATGCCTCGTTGGGGAAGACAGCAATTGCCGAGATTCAATTTGC
TGATTATATTTTCCCGGCTTTTGATCAGGTAGCTAAGATATGGGTGGATA
GGAGGGAGGAAGGGGCGGAGACGACACGTCAGGTGTGAAAATTCATCTAG
ATTTGTCTTGGTCTTTTTCTTCTCATTATTCTATTTCATCTTATTCTCAT
TCTTCTTATTCTTCTCAAATATCTTATTATTACTATTATTCTTATAAATA
TTATCATTCAATATTCTTTCCTCCACCATGATTCACAGCTCGTTAACGAG
GCCGCCAAATTTCGGTACCGCTCCGGCAATCAATTCAATTGTGGTACGTA
CCTCCCTCCCTCCCTCCCTCCCTCTTCTTCTCCTCCCTCCCTCCCTTTAC
AATTGGTGGCCTGACGCCCCGAACCCCCTGTGGGGGAGCTTGCCTTTCTC
CTCCCTTCCTCCGCCCTCCATCTCACCCTTCCTCCTTCTTCCCCTCTCTC
CCTCCCTCCCTTCCCTTTCACCAGGGGGCCTGACGGTCCGAGCGCCCTGT
GGAGCCGTCGGTCATGGGGGGCATTACCACTCTCAGTCGCCCGAGGCGTA
TTTCACCCACACACCAGGCCTTAAGGTACGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGACGTGGAGAAAAATCTTTCGTTCTTTCACTCACCTTCTC
ATTTTCCCCTCTTTTCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCTTCCT
CCCTCCCTCCCTCCCTCTTATCCTGCAGGTGGTGATGCCTCGTTCTCCTG
CTGAGGCGAAGGGGCTCCTCCTCTCTTCTATTCGCGCGCCAGATCCCGTC
ATTTTCCTAGAGCCAAAGGCACTGTACCGCGCTGCGGTGGAGGAGGTGAG
GGAGGGAGGGAAGGAGGGGAGGGAAGGGAGGGTAGCGTGGGACCTTTGGG
TTGACATTTCTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCTCCCCCTCCC
TCCCTCCCTCAGGTCCCGGAAGGCGACTACACCATCCCCCTCGGACGGGC
GGACGTGCTGCGGGAGGGTCGTGACGTCACGGTGGTGGGATGGGGAGGGC
AACTGAGGGTGCTGGAGAAGGTGAGCGAGAGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGACCCAAACAGCACTCTGACGGTTTGTTTACACCGCCCTCCC
TCCCTCCCCCCCTCCCCTTCCTCAGGCCTGCGACTTGGCCGCTGATGAAG
GGATAGCCTGCGAGCTCATCGATCTTCGGACTCTCTTGCCTTGGGACGCA
GACACCGTCATGGCCTCGGTCCACAAAACGGGCCGGCTGGTGGTTAGCCA
TGAGGCGCCTGTACGTTCCCTGCCTCCCTCCCTCCCTCTCTTCATGTGAA
GTAGCCTGAGGAATGATAAACCCTCCCTCTTACATCTTTTTACAACTGCA
CGTAGGTCATCAGTCTCGTCCTCCCTCCCTCCCTCCCTCCCTCAGAAAAC
AGGGGGTTTTGCCGCTGAAGTAGTGGCTGAGATGCAAGAGCGATGTTTTC
TTTTTTTGGAGGCTCCGGTGCAGCGTGTGTGCGGGTACGACACGCCTTTC
CCTTTGGTGTTCGAAAAGGTGGGGAGGGAGGGAGGGTGGTAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGAGGGAGGGGGGGAGGGTCCGGTGCGGCGT
GTGTGCGGGTACGATACACCTTTCCTATTCGAATAGGTGGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGGGAA
GGAGAGGCTGCAGCAAGTGATGGGTTTCAATTCAAAGCTTGAGGTGGGCT
GATCTATCTTCCTTCGCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAG
TACTACGTTCCGGACGCTTACAAAAACCTGGAGGCGATCAAGAAGGCAGT
TCACTTCTGACAGCCGGGGGAAGGGAGGGAGGGGGGAGGGAGGAAGGTGT
TTTTACTGTATGTTGTGTATATAAAATTATCAGGCGAATGACGAGAGGGC
GTGACGGAATAGGGG back to topCoding sequence (CDS) from alignment at chr13:205801..210015+ >NO13G00610.1 ID=NO13G00610.1|Name=NO13G00610.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr13:205801..210015+ (Nannochloropsis oceanica) ATGCAAGGCATTGCGTTCCTTTCTACCGTCGCAGGGACTGCACGGGCTCC CGGACGCCTGCGTCGTCGGCTGCTTTCTTCGAGCCTCCGCACGACGACAC GCAGCTACACCCCGGCTGCAGGTGTAATGACGAAGCGGATGAACTTGTTC ACGGCCATCAATGATGCCTTGCGCACAGCCATGGACACGGACCAGAGCGC GATTATTTTCGGGGAGGACGTGGCCTTTGGCGGCGTATTCCGTTGCACTG TGGGTTTGCGCGAAGATTTCGGAGATGGCCGGGTCTTTAATACGCCCTTG TGCGAGCAAGGGATCGCCGGCTTTGGGATCGGGTATGCCTCGTTGGGGAA GACAGCAATTGCCGAGATTCAATTTGCTGATTATATTTTCCCGGCTTTTG ATCAGCTCGTTAACGAGGCCGCCAAATTTCGGTACCGCTCCGGCAATCAA TTCAATTGTGGGGGCCTGACGGTCCGAGCGCCCTGTGGAGCCGTCGGTCA TGGGGGGCATTACCACTCTCAGTCGCCCGAGGCGTATTTCACCCACACAC CAGGCCTTAAGGTGGTGATGCCTCGTTCTCCTGCTGAGGCGAAGGGGCTC CTCCTCTCTTCTATTCGCGCGCCAGATCCCGTCATTTTCCTAGAGCCAAA GGCACTGTACCGCGCTGCGGTGGAGGAGGTCCCGGAAGGCGACTACACCA TCCCCCTCGGACGGGCGGACGTGCTGCGGGAGGGTCGTGACGTCACGGTG GTGGGATGGGGAGGGCAACTGAGGGTGCTGGAGAAGGCCTGCGACTTGGC CGCTGATGAAGGGATAGCCTGCGAGCTCATCGATCTTCGGACTCTCTTGC CTTGGGACGCAGACACCGTCATGGCCTCGGTCCACAAAACGGGCCGGCTG GTGGTTAGCCATGAGGCGCCTAAAACAGGGGGTTTTGCCGCTGAAGTAGT GGCTGAGATGCAAGAGCGATGTTTTCTTTTTTTGGAGGCTCCGGTGCAGC GTGTGTGCGGGTACGACACGCCTTTCCCTTTGGTGTTCGAAAAGTACTAC GTTCCGGACGCTTACAAAAACCTGGAGGCGATCAAGAAGGCAGTTCACTT CTGA back to top
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