NO13G00380.1, NO13G00380.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO13G00380.1
Unique Name	NO13G00380.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2033
Alignment location	chr13:124094..127167 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr13	genome	chr13:124094..127167 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO13G00380.1 vs.
Match: EWM26413.1 (hypothetical protein Naga_101468g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 374.4 bits (960), Expect = 7.300e-100
Identity = 204/366 (55.74%), Postives = 259/366 (70.77%), Query Frame = 0

Query:    1 MYLPLVLPLLVVLGGAWAPTAIAQECPRLIVGAKAQPNGKRGILAGRQKAKITVKIRSKEAAQDVNFKMELPAGLSVVKLKARPFRMLSPAQIIQNPDGTTAIYWTDFDFKKS--SKRVFQAVVMADDCAPEMLDVTALAYLVNATDLSAYCAVPLVDPVVLRVRYPGNKKVSEHALSRSVTCAPTPAPSVNPAIPFQIFGEGQRCLQAGQLAPFDRRLSALHNADEGLKSLSTIDGQHRQLPPVEINNPTECFDYCSINGNEPSPFFFNWNTATNQCFCCGGECDLIVEPDFNAYKVVLAGTRAPTASPSMSPTTAPMQSPSASPTASLSASPTASPTASPTASPTASPTASPTAIPSASPTPAP 365
            M +  V   LVVLG A+APTA+AQECP L +  KA+P  KRG+LAG+  A++TV +RSKE   D+NFK+ LP GLS+V+  +RP   + P ++++NPDG+TA++W  FDF K+  +KRVF+A    D CAPE L VT LAYLVNATDL+ YCA PL  P VL VRY   KKV+        TCAPTPAP+VNPA PF +FG+GQRCL+A +LAPFD R   L ++  G +   +I  +HR L    I  P++CF YCS+NG E  PFFFNWNT T+QCFCCG  C LIV+P F+AY+V +  T APTA  + +PT AP  SP+ +PTAS +A PTA+PTA+PTASPTA+PT SPTA P+ SPT AP
Sbjct:   36 MRVLFVSACLVVLGIAYAPTAVAQECPTLTLTGKARPGFKRGVLAGKGHARVTVTLRSKEVVDDLNFKLLLPTGLSLVRTSSRPKARIHP-EVVENPDGSTAVFWLGFDFAKAKGNKRVFKAKAKVDACAPETLTVTGLAYLVNATDLTTYCATPLASPAVLNVRYSKAKKVA--------TCAPTPAPTVNPAQPFVLFGDGQRCLEASRLAPFDDR--RLLSSSNGREYAHSIHREHRHLQ--SIATPSDCFTYCSLNGGESVPFFFNWNTVTSQCFCCGNVCTLIVDPAFSAYEVTMDATSAPTAVSTATPTPAPTASPTLTPTASPTAVPTATPTAAPTASPTAAPTKSPTAAPTTSPTAAP 388

The following BLAST results are available for this feature:

BLAST of NO13G00380.1 vs.

BLAST of NO13G00380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26413.1	7.300e-100	55.74	hypothetical protein Naga_101468g1, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO13G00380	NO13G00380	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00380.1	NO13G00380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO13G00380.1.cds1	NO13G00380.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00380.1.cds2	NO13G00380.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00380.1.cds3	NO13G00380.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00380.1.cds4	NO13G00380.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00380.1.cds5	NO13G00380.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00380.1.cds6	NO13G00380.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00380.1.cds7	NO13G00380.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO13G00380.1.cds8	NO13G00380.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:124094..127167-
coding sequence from alignment at chr13:124094..127167-

mRNA sequence

>NO13G00380.1 ID=NO13G00380.1|Name=NO13G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2033bp
AGACACAGACACAAATACGGGCCGTCTGATAAGCTGATCCTCAACCGGAA
GCCATGTACCTGCCCCTCGTCCTTCCTCTGCTCGTCGTCCTGGGAGGTGC
GTGGGCACCTACCGCCATTGCCCAGGAGTGTCCCCGTCTGATTGTGGGCG
CCAAGGCACAACCTAACGGCAAGCGTGGCATCCTGGCAGGCCGACAGAAA
GCCAAGATTACCGTCAAAATACGAAGCAAGGAGGCAGCACAAGACGTCAA
TTTCAAGATGGAGCTGCCCGCTGGTTTGTCCGTGGTCAAGCTGAAGGCCC
GTCCGTTCCGCATGCTCTCCCCGGCGCAGATCATTCAGAACCCAGACGGG
ACAACGGCCATCTACTGGACGGATTTCGATTTCAAAAAGAGCTCGAAGCG
CGTCTTTCAGGCCGTGGTGATGGCCGATGACTGTGCCCCTGAGATGCTTG
ATGTCACAGCCCTGGCATATCTCGTCAACGCCACGGACCTGTCCGCCTAC
TGCGCTGTACCCTTGGTCGATCCTGTGGTCTTGCGTGTGCGATATCCAGG
CAACAAGAAGGTGTCTGAGCACGCCTTATCGAGATCTGTCACGTGCGCGC
CGACCCCGGCCCCGAGCGTCAATCCCGCAATTCCCTTCCAAATTTTTGGT
GAGGGGCAGCGATGCTTGCAAGCAGGACAACTGGCGCCCTTTGATCGCCG
TTTGTCGGCACTACATAATGCAGACGAGGGACTGAAATCGCTCAGCACTA
TTGACGGCCAGCATCGTCAGCTGCCTCCTGTGGAGATTAACAACCCGACG
GAGTGCTTCGACTACTGCTCGATCAATGGCAACGAACCGAGTCCATTTTT
CTTCAACTGGAACACAGCGACCAACCAGTGCTTTTGCTGCGGCGGAGAAT
GCGACTTGATTGTTGAGCCAGACTTCAATGCCTATAAGGTAGTCTTGGCG
GGGACCAGGGCCCCCACTGCGTCTCCTTCCATGAGTCCTACGACAGCACC
GATGCAGAGCCCCTCTGCTTCACCGACGGCCTCGCTCTCTGCTTCACCTA
CAGCCTCCCCCACGGCGTCGCCCACTGCTTCACCCACCGCGTCACCCACG
GCTTCACCCACGGCTATCCCCTCTGCGTCTCCAACACCAGCACCGATAGG
ACCGGGCGTCATCTGGACACAGCAAACAAACAGTACCCAGCAACAGTGGG
AGTCGATCACATCCTCGTCGGATGGCACGAAACTTGCCGCCGGGGCGCAT
GAAGGCTTCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCA
AACAAACAGTACCCAGCAACAGTGGGAGTCGATCGCATCCTCGTCGAATG
GCACGAAACTTGCCGCCGCGGTGTATGAAGGCTTCATCTATACATCCACC
GACTCGGGCGTCACCTGGACACAGCAAACAAACAGTACCCAGCAACAGTG
GGAGTCGATCGCATCCTCGTCGGATGGCACGAAACTTGCCGCCCTCGTAT
ATGAAGGCTTCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAG
CAAACCAACAGTACTCAACAAATCTGGCAGTCGATCACATCCTCGTCGGA
TGGCACGAAACTTGCCGCCCTCGTGTATAACGGCTTCATCTATACATCCA
CCGACTCGGGCGTTACCTGGACAAAGCAAACGAACAGTACCCAGCAAAAG
TGGTATCGGATGGCATCCTCGTCGGATGGCACGAAACTTGCCGCCGGGGT
GTATAACGGTTTCATCTATACGTCGACCGACTCGGGCGTCACCTGGACGC
AGCAAACAAACAGTACCCAGCAAATCTGGGAGTCGATCGCATCCTCGTCG
GATGGCACGAAACTTGCCGCCGCGGTAAATGATGGCTTCATCCATACGTC
GACCGACTCGGGCGTCACCTGGACGCCGCAAAGCGACAGTACCCAGCAAA
GCTGGTATGCGATCGCATCCTCGTCGGATGGCACGAAACTTGCCGCCGTA
GTGTATGATGGCTTCATACACACGTCCCCCTAG

protein sequence of NO13G00380.1

>NO13G00380.1-protein ID=NO13G00380.1-protein|Name=NO13G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=660bp
MYLPLVLPLLVVLGGAWAPTAIAQECPRLIVGAKAQPNGKRGILAGRQKA
KITVKIRSKEAAQDVNFKMELPAGLSVVKLKARPFRMLSPAQIIQNPDGT
TAIYWTDFDFKKSSKRVFQAVVMADDCAPEMLDVTALAYLVNATDLSAYC
AVPLVDPVVLRVRYPGNKKVSEHALSRSVTCAPTPAPSVNPAIPFQIFGE
GQRCLQAGQLAPFDRRLSALHNADEGLKSLSTIDGQHRQLPPVEINNPTE
CFDYCSINGNEPSPFFFNWNTATNQCFCCGGECDLIVEPDFNAYKVVLAG
TRAPTASPSMSPTTAPMQSPSASPTASLSASPTASPTASPTASPTASPTA
SPTAIPSASPTPAPIGPGVIWTQQTNSTQQQWESITSSSDGTKLAAGAHE
GFIYTSTDSGVTWTQQTNSTQQQWESIASSSNGTKLAAAVYEGFIYTSTD
SGVTWTQQTNSTQQQWESIASSSDGTKLAALVYEGFIYTSTDSGVTWTQQ
TNSTQQIWQSITSSSDGTKLAALVYNGFIYTSTDSGVTWTKQTNSTQQKW
YRMASSSDGTKLAAGVYNGFIYTSTDSGVTWTQQTNSTQQIWESIASSSD
GTKLAAAVNDGFIHTSTDSGVTWTPQSDSTQQSWYAIASSSDGTKLAAVV
YDGFIHTSP*

mRNA from alignment at chr13:124094..127167-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO13G00380.1 ID=NO13G00380.1|Name=NO13G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=3074bp|location=Sequence derived from alignment at chr13:124094..127167- (Nannochloropsis oceanica)
AGACACAGACACAAATACGGGCCGTCTGATAAGCTGATCCTCAACCGGAA
GCCATGTACCTGCCCCTCGTCCTTCCTCTGCTCGTCGTCCTGGGAGGTGC
GTGGGCACCTACCGCCATTGCCCAGGAGTGTCCCCGTCTGATTGTGGGCG
CCAAGGCACAACCTAACGGCAAGCGTGGCATCCTGGCAGGCCGACAGAAA
GCCAAGATTACCGTCAAAATACGAAGCAAGGAGGCAGCACAAGACGTCAA
TTTCAAGATGGAGCTGCCCGCTGGTTTGTCCGTGGTCAAGCTGAAGGCCC
GTCCGTTCCGCATGCTCTCCCCGGCGCAGATCATTCAGAACCCAGACGGG
ACAACGGCCATCTACTGGACGGATTTCGATTTCAAAAAGAGCTCGAAGCG
CGTCTTTCAGGCCGTGGTGATGGCCGATGACTGTGCCCCTGAGATGCTTG
ATGTCACAGCCCTGGCATATCTCGTCAACGCCACGGACCTGTCCGCCTAC
TGCGCTGTACCCTTGGTCGATCCTGTGGTCTTGCGTGTGCGATATCCAGG
CAACAAGAAGGTGTCTGAGCACGCCTTATCGAGATCTGTCACGTGCGCGC
CGACCCCGGCCCCGAGCGTCAATCCCGCAATTCCCTTCCAAATTTTTGGT
GAGGGGCAGCGATGCTTGCAAGCAGGACAACTGGCGCCCTTTGATCGCCG
TTTGTCGGCACTACATAATGCAGACGAGGGACTGAAATCGCTCAGCACTA
TTGACGGCCAGCATCGTCAGCTGCCTCCTGTGGAGATTAACAACCCGACG
GAGTGCTTCGACTACTGCTCGATCAATGGCAACGAACCGAGTCCATTTTT
CTTCAACTGGAACACAGCGACCAACCAGTGCTTTTGCTGCGGCGGAGAAT
GCGACTTGATTGTTGAGCCAGACTTCAATGCCTATAAGGTAGTCTTGGCG
GGGACCAGGGCCCCCACTGCGTCTCCTTCCATGAGTCCTACGACAGCACC
GATGCAGAGCCCCTCTGCTTCACCGACGGCCTCGCTCTCTGCTTCACCTA
CAGCCTCCCCCACGGCGTCGCCCACTGCTTCACCCACCGCGTCACCCACG
GCTTCACCCACGGCTATCCCCTCTGCGTCTCCAACACCAGCACCGATAGG
ACCGGGCGTCATCTGGACACAGCAAACAAACAGTACCCAGCAACAGTGGG
AGTCGATCACATCCTCGTCGGATGGCACGGTACGTGGTTGGATCCGGGGC
TTCACGCATGGCGCACGACACCACCATCCTGTATGCTGGTCGCGTCGTAG
TAAGATGTATCGTCGAGAGTCTATATGTGTTGCTCTATCTGACGCGCCAT
CTTCGACTACCCATCCAATCCCCCTTAGAAACTTGCCGCCGGGGCGCATG
AAGGCTTCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAA
ACAAACAGTACCCAGCAACAGTGGGAGTCGATCGCATCCTCGTCGAATGG
CACGGTACGTGGTTGGATCCGGGGCTTCACGCATGGCGCACGACACCACC
ATCCTGTATGCTGGTCGCGTCGTAGTAAGATGTATCGTCGAGAGTCTATA
TGTGTTGCTCTATCTGACGCGCCATCTTCGACTACTTATCAAATCCCCCT
TAGAAACTTGCCGCCGCGGTGTATGAAGGCTTCATCTATACATCCACCGA
CTCGGGCGTCACCTGGACACAGCAAACAAACAGTACCCAGCAACAGTGGG
AGTCGATCGCATCCTCGTCGGATGGCACGGTACGTGGTTGGATCCGGGGC
TTCACGCATGGCGCACGACACCACCATCCTGTATGCTGGTCGCGTCATAG
TAAGATATATCGTCGAGAGTCTATATGTTGCTCTATCTGACGCGCTATCT
TCGCCATCTCATCCAATCCCCCACAGAAACTTGCCGCCCTCGTATATGAA
GGCTTCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAAAC
CAACAGTACTCAACAAATCTGGCAGTCGATCACATCCTCGTCGGATGGCA
CGGTACGTGGTTGGATCCGGGGCTTCACGCATGGCGCACGACACCACCGT
CCTTGAGGCTGGTCGCGTCATAGTAAGATGTATTCTCGAGAGTCTCTATG
TGTTGCTCTATCTGACGCGCCATCTTCGACTACTCATCCAATCCCCCACA
GAAACTTGCCGCCCTCGTGTATAACGGCTTCATCTATACATCCACCGACT
CGGGCGTTACCTGGACAAAGCAAACGAACAGTACCCAGCAAAAGTGGTAT
CGGATGGCATCCTCGTCGGATGGCACGGTACGTGGTTGGATCCGGGGCTT
TGTCCACAGTGCACGATGGCAATGTCCTTGAGGCTGGTCGCGTCGTAGAT
GGGTGTATTCTCGAGAGTCTCTATGTGTTTCTCACAGATATCTGACGCGC
CATCTTCGACTACCCATCCACTCCCCCTTAGAAACTTGCCGCCGGGGTGT
ATAACGGTTTCATCTATACGTCGACCGACTCGGGCGTCACCTGGACGCAG
CAAACAAACAGTACCCAGCAAATCTGGGAGTCGATCGCATCCTCGTCGGA
TGGCACGGTACGTGGTTGGATCCCGGGCTTCACGCATGGCGCACGACACC
ACCATCCTGTATGCTGGTCGCGTCGTAGTAAGATGTATCGTCGAGAGTCT
CTATGTGTTGCTCTATCTGACGCGCTATCTTCGCCATCCAATCCCCCACA
GAAACTTGCCGCCGCGGTAAATGATGGCTTCATCCATACGTCGACCGACT
CGGGCGTCACCTGGACGCCGCAAAGCGACAGTACCCAGCAAAGCTGGTAT
GCGATCGCATCCTCGTCGGATGGCACGGTACGTGGTTGGATCCGGGGCTT
CACGCATGGCGCACAACACCACCGTCCTTGAGGCTGGTCGCATCATAGTA
AGATGTATTCTCGAGAGTCTCTATGTGTTGCTCTATCTGACGCGCCATCT
TCGACTACTCATCGAATCCCCCACAGAAACTTGCCGCCGTAGTGTATGAT
GGCTTCATACACACGTCCCCCTAG

Coding sequence (CDS) from alignment at chr13:124094..127167-

>NO13G00380.1 ID=NO13G00380.1|Name=NO13G00380.1|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at chr13:124094..127167- (Nannochloropsis oceanica)
ATGTACCTGCCCCTCGTCCTTCCTCTGCTCGTCGTCCTGGGAGGTGCGTG
GGCACCTACCGCCATTGCCCAGGAGTGTCCCCGTCTGATTGTGGGCGCCA
AGGCACAACCTAACGGCAAGCGTGGCATCCTGGCAGGCCGACAGAAAGCC
AAGATTACCGTCAAAATACGAAGCAAGGAGGCAGCACAAGACGTCAATTT
CAAGATGGAGCTGCCCGCTGGTTTGTCCGTGGTCAAGCTGAAGGCCCGTC
CGTTCCGCATGCTCTCCCCGGCGCAGATCATTCAGAACCCAGACGGGACA
ACGGCCATCTACTGGACGGATTTCGATTTCAAAAAGAGCTCGAAGCGCGT
CTTTCAGGCCGTGGTGATGGCCGATGACTGTGCCCCTGAGATGCTTGATG
TCACAGCCCTGGCATATCTCGTCAACGCCACGGACCTGTCCGCCTACTGC
GCTGTACCCTTGGTCGATCCTGTGGTCTTGCGTGTGCGATATCCAGGCAA
CAAGAAGGTGTCTGAGCACGCCTTATCGAGATCTGTCACGTGCGCGCCGA
CCCCGGCCCCGAGCGTCAATCCCGCAATTCCCTTCCAAATTTTTGGTGAG
GGGCAGCGATGCTTGCAAGCAGGACAACTGGCGCCCTTTGATCGCCGTTT
GTCGGCACTACATAATGCAGACGAGGGACTGAAATCGCTCAGCACTATTG
ACGGCCAGCATCGTCAGCTGCCTCCTGTGGAGATTAACAACCCGACGGAG
TGCTTCGACTACTGCTCGATCAATGGCAACGAACCGAGTCCATTTTTCTT
CAACTGGAACACAGCGACCAACCAGTGCTTTTGCTGCGGCGGAGAATGCG
ACTTGATTGTTGAGCCAGACTTCAATGCCTATAAGGTAGTCTTGGCGGGG
ACCAGGGCCCCCACTGCGTCTCCTTCCATGAGTCCTACGACAGCACCGAT
GCAGAGCCCCTCTGCTTCACCGACGGCCTCGCTCTCTGCTTCACCTACAG
CCTCCCCCACGGCGTCGCCCACTGCTTCACCCACCGCGTCACCCACGGCT
TCACCCACGGCTATCCCCTCTGCGTCTCCAACACCAGCACCGATAGGACC
GGGCGTCATCTGGACACAGCAAACAAACAGTACCCAGCAACAGTGGGAGT
CGATCACATCCTCGTCGGATGGCACGAAACTTGCCGCCGGGGCGCATGAA
GGCTTCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAAAC
AAACAGTACCCAGCAACAGTGGGAGTCGATCGCATCCTCGTCGAATGGCA
CGAAACTTGCCGCCGCGGTGTATGAAGGCTTCATCTATACATCCACCGAC
TCGGGCGTCACCTGGACACAGCAAACAAACAGTACCCAGCAACAGTGGGA
GTCGATCGCATCCTCGTCGGATGGCACGAAACTTGCCGCCCTCGTATATG
AAGGCTTCATCTATACATCGACCGACTCGGGCGTCACCTGGACGCAGCAA
ACCAACAGTACTCAACAAATCTGGCAGTCGATCACATCCTCGTCGGATGG
CACGAAACTTGCCGCCCTCGTGTATAACGGCTTCATCTATACATCCACCG
ACTCGGGCGTTACCTGGACAAAGCAAACGAACAGTACCCAGCAAAAGTGG
TATCGGATGGCATCCTCGTCGGATGGCACGAAACTTGCCGCCGGGGTGTA
TAACGGTTTCATCTATACGTCGACCGACTCGGGCGTCACCTGGACGCAGC
AAACAAACAGTACCCAGCAAATCTGGGAGTCGATCGCATCCTCGTCGGAT
GGCACGAAACTTGCCGCCGCGGTAAATGATGGCTTCATCCATACGTCGAC
CGACTCGGGCGTCACCTGGACGCCGCAAAGCGACAGTACCCAGCAAAGCT
GGTATGCGATCGCATCCTCGTCGGATGGCACGAAACTTGCCGCCGTAGTG
TATGATGGCTTCATACACACGTCCCCCTAG

Synonyms

Publications