NO13G00010.1, NO13G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO13G00010.1
Unique NameNO13G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr13:292..1925 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr13genomechr13:292..1925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO13G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO13G00010NO13G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO13G00010.1NO13G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO13G00010.1.cds1NO13G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00010.1.cds2NO13G00010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00010.1.cds3NO13G00010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00010.1.cds4NO13G00010.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO13G00010.1.cds5NO13G00010.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO13G00010.1 ID=NO13G00010.1|Name=NO13G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
AACACATCACACAGCAACCTCCGGCTCCATCATTACCACCGACCATGAAG
CTCACCCTGCGTACACTGGCCTTGGCTGCTGCCTTGTTGCCCTCGGTCCT
GGCCGGACGAGGAATCGACAAAGGGCTTGATATTGCAACCAACAAGAATA
CAACAAGCACCAAGCCAGTCCACGGTGACAAGAGCGGCAAGACGAAAACG
TTAGGCCCCGCCCGTTGGAGCAATGCCAAGAAGGCTAACGCGGGTATCTT
TATCGCCGAAACACTCACTATTTCGGGTGATTCGGATGCTTCGGAAGCGC
TCGTCTATTCAAAGAAGGGGGCGAGTGTTTATGTGCGTTGCACGGGAAAG
GATGCACCAAACGTTGGCGGCGTGGATTGTAACTTTTCTCCCTGTGCACA
AATCTATGTTGAGGTCGATGACCCCGAAAATTGGTTCGGAGGTTGCAACA
ACGGTAACAGTCAATCTCCTGATCTGACAGATGTCGATGGCATTTGCTTT
TTCATTGACAGCGACAGCGGTGATGAGGTCTCGGAATGGTACTATGGTGG
CAGCATCATGAACAAGTCGGGCCGTTATATTTATGGCGACGCTTTGAGTA
TGATGACTGGTCAGCAACCTTTCGGCCAGAACAACACCTGCTACTTCGGA
GGGACCTTCTACGACCTTTTACCTAAGTTTGACTTGGACTCTGCGAAGTA
TCAGAAACTTGCGGCCAAGCGCGGCGATTAAGTGGGACCCTTTGCTTCGG
CTTTGAGGACCCTTGGTCTACATGTTTCTTCGTTCACCCTCTACAGTCCA
CTCATTCGTGGGGTGTCGTGTAATGTGTATGCATGTATGAGGGCTCAGGG
CCGATGGGGCTCGTACCCGTCCCTTTTGCCTCATCGCATGTTTGTCTTAT
GTGTGTATGTGTGTTGAGGATGGGAATGATGGGTGGTGCTGGTCGCCATC
TCGCCATTTCTTTCCCAACTTTGTGTTTTATGTTTGACCATTCTGTTGAA
ACTCTTAGCACTCTGTTAGTGACTTGCCGTGCTTTGTCTCGGTGGTTGAT
ATTGGGAGTAAGGTTCGCTTGAAAGCAGCCAAAGAAAGAGCAGAAGAGGT
TTATGTTAAAGGGAATGCCTATGGG
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protein sequence of NO13G00010.1

>NO13G00010.1-protein ID=NO13G00010.1-protein|Name=NO13G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MKLTLRTLALAAALLPSVLAGRGIDKGLDIATNKNTTSTKPVHGDKSGKT
KTLGPARWSNAKKANAGIFIAETLTISGDSDASEALVYSKKGASVYVRCT
GKDAPNVGGVDCNFSPCAQIYVEVDDPENWFGGCNNGNSQSPDLTDVDGI
CFFIDSDSGDEVSEWYYGGSIMNKSGRYIYGDALSMMTGQQPFGQNNTCY
FGGTFYDLLPKFDLDSAKYQKLAAKRGD*
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mRNA from alignment at chr13:292..1925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO13G00010.1 ID=NO13G00010.1|Name=NO13G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp|location=Sequence derived from alignment at chr13:292..1925- (Nannochloropsis oceanica)
AACACATCACACAGCAACCTCCGGCTCCATCATTACCACCGACCATGAAG
CTCACCCTGCGTACACTGGCCTTGGCTGCTGCCTTGTTGCCCTCGGTCCT
GGCCGGACGAGGAATCGACAAAGGGCTTGATATTGCAACCAACAAGAATA
CAACAAGCACCAAGCCAGTCCACGGTGACAAGAGCGGCAAGACGAAAACG
TTAGGCCCCGCCCGTTGGTAAGAATCGAAGGAGTACCGAGAAATAAAGTT
CGATCAACACTTCTGGAGAAATAAACGACAAACATCCAAACTACAATCAA
ATTTTACCAGGAGCAATGCCAAGAAGGCTAACGCGGGTATCTTTATCGCC
GAAACACTCACTATTTCGGGTGATTCGGATGCTTCGGAAGCGTAAGTAGG
GATCTGTGTTTATATATACCGATAAATTTTAACAAATCACGAAGCATCAA
AAACCGATTTACCAATACCTACATATGTCATAATAAATAGGCTCGTCTAT
TCAAAGAAGGGGGCGAGTGTTTATGTGCGTTGCACGGGAAAGGATGCACC
AAACGTTGGCGGCGTGGATTGTAACTTTTCTCCCTGTGCACAAATCTATG
TTGAGGTCGATGACCCCGAAAATTGGTTCGGAGGTAAGTGAGCTAGGGAA
GAGAAATAATTGAAGAGCTGGGGGAGGTAAGGCGTTGAATAGCGCTTCTA
CGGTGGGTATTTAAATTTCTCCCGTACATGGTCTACCACGTACACACACT
AACATACCCACACCACTTCTCTCTCACGTATGAACATGCAGGTTGCAACA
ACGGTAACAGTCAATCTCCTGATCTGACAGATGTCGATGGCATTTGCTTT
TTCATTGACAGCGACAGCGGTGATGAGGTCTCGGAATGGTACTATGGTGG
CAGCATCATGAACAAGTCGGGCCGTTATATTTATGGCGACGGTAAGAGCA
CATGGAGAGGGAAATCCGCTGCTTATTCATTTGTAGTTGTTAGTCTGACG
CGATCATTTACATTTACGTAAAAATGTATTCCGTTTTATGTCGCCACTTT
TCTTGTCTCTTTTTACGTTTTCTCACTTTATGTCCTCCACATATCACTAG
CTTTGAGTATGATGACTGGTCAGCAACCTTTCGGCCAGAACAACACCTGC
TACTTCGGAGGGACCTTCTACGACCTTTTACCTAAGTTTGACTTGGACTC
TGCGAAGTATCAGAAACTTGCGGCCAAGCGCGGCGATTAAGTGGGACCCT
TTGCTTCGGCTTTGAGGACCCTTGGTCTACATGTTTCTTCGTTCACCCTC
TACAGTCCACTCATTCGTGGGGTGTCGTGTAATGTGTATGCATGTATGAG
GGCTCAGGGCCGATGGGGCTCGTACCCGTCCCTTTTGCCTCATCGCATGT
TTGTCTTATGTGTGTATGTGTGTTGAGGATGGGAATGATGGGTGGTGCTG
GTCGCCATCTCGCCATTTCTTTCCCAACTTTGTGTTTTATGTTTGACCAT
TCTGTTGAAACTCTTAGCACTCTGTTAGTGACTTGCCGTGCTTTGTCTCG
GTGGTTGATATTGGGAGTAAGGTTCGCTTGAAAGCAGCCAAAGAAAGAGC
AGAAGAGGTTTATGTTAAAGGGAATGCCTATGGG
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Coding sequence (CDS) from alignment at chr13:292..1925-

>NO13G00010.1 ID=NO13G00010.1|Name=NO13G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr13:292..1925- (Nannochloropsis oceanica)
ATGAAGCTCACCCTGCGTACACTGGCCTTGGCTGCTGCCTTGTTGCCCTC
GGTCCTGGCCGGACGAGGAATCGACAAAGGGCTTGATATTGCAACCAACA
AGAATACAACAAGCACCAAGCCAGTCCACGGTGACAAGAGCGGCAAGACG
AAAACGTTAGGCCCCGCCCGTTGGAGCAATGCCAAGAAGGCTAACGCGGG
TATCTTTATCGCCGAAACACTCACTATTTCGGGTGATTCGGATGCTTCGG
AAGCGCTCGTCTATTCAAAGAAGGGGGCGAGTGTTTATGTGCGTTGCACG
GGAAAGGATGCACCAAACGTTGGCGGCGTGGATTGTAACTTTTCTCCCTG
TGCACAAATCTATGTTGAGGTCGATGACCCCGAAAATTGGTTCGGAGGTT
GCAACAACGGTAACAGTCAATCTCCTGATCTGACAGATGTCGATGGCATT
TGCTTTTTCATTGACAGCGACAGCGGTGATGAGGTCTCGGAATGGTACTA
TGGTGGCAGCATCATGAACAAGTCGGGCCGTTATATTTATGGCGACGCTT
TGAGTATGATGACTGGTCAGCAACCTTTCGGCCAGAACAACACCTGCTAC
TTCGGAGGGACCTTCTACGACCTTTTACCTAAGTTTGACTTGGACTCTGC
GAAGTATCAGAAACTTGCGGCCAAGCGCGGCGATTAA
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Synonyms
Publications