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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr12 | genome | chr12:1127976..1131301 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03930.1 vs.
Match: XP_005854806.1 (CCR4-NOT transcription complex subunit 7/8 [Nannochloropsis gaditana CCMP526]; EKU21555.1 CCR4-NOT transcription complex subunit 7/8 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 588.2 bits (1515), Expect = 2.300e-164 Identity = 309/418 (73.92%), Postives = 344/418 (82.30%), Query Frame = 0
Query: 52 EGQQTADSPPAPPGPATGD-----QQGGGGGGGGGGGGGGQQQQPHQQMGMNGGDIGGSQESSAGEGGEIPGIGPTRHIYTSPDGKRMEIREVWVENLDLEMTAIREVVERYPYVAMDTEFPGVVARPVGDVTAADYQYKTLKCNVDLLKIIQLGLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHEHHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPADENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQAGSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLGHNHTVYRNKMQATNRQQQGHGHGGHGGHGQAPPALERNDSTSSSQSVAVSTSAAGKTADSAASPTTTGASGGIDGD 465
E QQ PAP G TG QG GGG GGG GG + +P Q+ GMNGG +SSA E GEIPG+GPTRHIYT DGKRMEIREVW+ENLD EM A+REVVE+YPYVAMDTEFPGVVARPVGDV+A+DYQYKTLKCNVDLLKIIQLGLSFAD++GNSPP+CPTWQ NF+FSL+DD+YAEDSIELLKQSGIDFSKHE HGIDV RFGELLMTSGLVLMD+VRWISFHSGYDFGYLLKVLTC+ALP+DENGFFDLLRTYFPCFYDIKYLMTAC GLHGGLQ+IAEELSVAR+GPMHQAGSDSLLTAQTFFRLC VSF+GL NLSDEKFKGELFGLGHNHTVYR+KMQ TNR HGHGG + PP + DS S+SQS++ ++ ++AA+ + G G +GD
Sbjct: 104 EEQQAPAPAPAPSGSDTGGGQSQAAQGREGGGEGGGQGGEDKGKPQQRFGMNGGP-----QSSAEEKGEIPGVGPTRHIYTGQDGKRMEIREVWLENLDKEMVAVREVVEQYPYVAMDTEFPGVVARPVGDVSASDYQYKTLKCNVDLLKIIQLGLSFADSDGNSPPECPTWQFNFRFSLSDDIYAEDSIELLKQSGIDFSKHESHGIDVFRFGELLMTSGLVLMDEVRWISFHSGYDFGYLLKVLTCAALPSDENGFFDLLRTYFPCFYDIKYLMTACQGLHGGLQRIAEELSVARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEKFKGELFGLGHNHTVYRSKMQNTNR----HGHGGLERQREVPPLTDSGDSVSTSQSISSTSGPRRVGTEAAATSPSAGTGTGGNGD 512
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G03930.1 ID=NO12G03930.1|Name=NO12G03930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1580bp
ATGGCATCTAATTACAGGCAAACCCACCAACAACAGTACCGTTACTCATC
CGCGGCGTCGCCTAAATCATCAGGCAGCAGCAGCAGTAAGGACCTCAAGA
AAGGATCAAACGCAAGAGAGCAAGAGGCCAGCCTGGGGTCTCTTCTCTTC
CCCGAGGGGCAGCAGACAGCAGATTCACCACCAGCACCGCCAGGACCGGC
GACCGGGGATCAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAG
GTGGAGGGCAGCAGCAGCAACCACACCAGCAAATGGGCATGAATGGCGGC
GACATCGGGGGAAGCCAGGAAAGCAGTGCGGGAGAAGGAGGCGAGATTCC
CGGCATAGGACCGACGCGGCACATCTACACGTCGCCCGATGGGAAGCGGA
TGGAAATCAGGGAGGTCTGGGTCGAAAATTTGGACCTAGAGATGACCGCT
ATCCGGGAGGTGGTGGAGAGGTATCCATACGTGGCAATGGACACGGAGTT
TCCCGGCGTCGTTGCCCGGCCAGTCGGAGACGTGACGGCCGCAGATTATC
AATACAAGACCTTGAAGTGCAATGTGGATTTGCTGAAGATCATCCAGCTA
GGCCTCTCCTTTGCCGATGCCGAGGGCAACAGCCCCCCAGACTGTCCCAC
CTGGCAGCTCAACTTCAAATTTTCTCTAAACGACGACATGTACGCCGAGG
ACTCGATCGAGCTGTTGAAGCAGAGCGGGATTGATTTCTCGAAGCATGAG
CATCATGGCATCGACGTGCCCCGGTTCGGGGAGCTGCTCATGACTAGCGG
CCTGGTGCTGATGGACGATGTGCGTTGGATCTCTTTTCACTCGGGCTATG
ACTTCGGATATCTGCTTAAGGTGCTCACCTGCTCCGCCTTGCCCGCCGAT
GAGAATGGATTCTTCGACCTTCTTCGCACTTATTTCCCCTGCTTCTACGA
CATCAAGTATCTCATGACGGCCTGTAATGGCCTACACGGAGGCCTCCAGA
AAATCGCCGAAGAGCTGTCCGTGGCACGCATAGGCCCTATGCACCAAGCC
GGCAGCGACTCCCTCCTGACCGCACAGACCTTCTTCCGCCTTTGCACGGT
CTCCTTCAACGGCCTCGGCAATCTGAGCGACGAGAAGTTCAAGGGCGAGC
TCTTCGGACTGGGGCATAACCATACGGTGTACCGGAACAAGATGCAGGCC
ACCAACCGACAGCAACAAGGCCATGGCCACGGAGGGCACGGCGGGCATGG
ACAAGCCCCCCCTGCACTCGAGCGGAATGACTCGACCAGCAGTTCTCAGT
CTGTCGCAGTGTCAACTTCGGCAGCGGGAAAGACAGCAGACAGCGCCGCC
TCGCCCACGACAACAGGCGCCTCTGGAGGGATTGATGGGGACGAAAAGCT
CGTGCCAGAGGAATACACGGCCACTGGAGGGTCTTGAGGAAGAAGCGTTA
GAGCGATGACGACGTGTATGTAAAGGAGGTTTGAGGGACCGAGAGGAGGG
AAGCAAAAGGAGAAAAGAGAGTTAGTGGGTGTGAATTGGTTAGGCACTTT
ATTCCCTAAAAAAGGAAACAGCTCAAGCCG back to topprotein sequence of NO12G03930.1 >NO12G03930.1-protein ID=NO12G03930.1-protein|Name=NO12G03930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MASNYRQTHQQQYRYSSAASPKSSGSSSSKDLKKGSNAREQEASLGSLLF
PEGQQTADSPPAPPGPATGDQQGGGGGGGGGGGGGGQQQQPHQQMGMNGG
DIGGSQESSAGEGGEIPGIGPTRHIYTSPDGKRMEIREVWVENLDLEMTA
IREVVERYPYVAMDTEFPGVVARPVGDVTAADYQYKTLKCNVDLLKIIQL
GLSFADAEGNSPPDCPTWQLNFKFSLNDDMYAEDSIELLKQSGIDFSKHE
HHGIDVPRFGELLMTSGLVLMDDVRWISFHSGYDFGYLLKVLTCSALPAD
ENGFFDLLRTYFPCFYDIKYLMTACNGLHGGLQKIAEELSVARIGPMHQA
GSDSLLTAQTFFRLCTVSFNGLGNLSDEKFKGELFGLGHNHTVYRNKMQA
TNRQQQGHGHGGHGGHGQAPPALERNDSTSSSQSVAVSTSAAGKTADSAA
SPTTTGASGGIDGDEKLVPEEYTATGGS* back to topmRNA from alignment at chr12:1127976..1131301- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G03930.1 ID=NO12G03930.1|Name=NO12G03930.1|organism=Nannochloropsis oceanica|type=mRNA|length=3326bp|location=Sequence derived from alignment at chr12:1127976..1131301- (Nannochloropsis oceanica)
ATGGCATCTAATTACAGGCAAACCCACCAACAACAGTACCGTTGTAAGGT
GTGTCTTCTCGACGTGTGGCGGGCAGCTTCTTTGCCTCACTCGCCCTTTA
CACATGTCCCCTCCATTCTCACTCCTCCTTTATGAGGAGTACCTTTCTGC
ATGGAATGATGATACTGCCCGTATTTGTCCCTCCCGCAAAGCACTTCCAC
CAACCCATGCATCTCTACAATCACAGACTCATCCGCGGCGTCGCCTAAAT
CATCAGGCAGCAGCAGCAGTAAGGACCTCAAGAAAGGATCAAACGCAAGA
GAGCAAGAGGCCAGCCTGGGGTCTCTTCTCTTCCCCGGTCAGTCATTCAG
CACATAGCCTCTTTCCTCGGCCGGCGGCAACCAACCAGCGCCACCTTTTC
TACCGCAGAGGGGCAGCAGACAGCAGATTCACCACCAGCACCGCCAGGAC
CGGCGACCGGGGATCAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGA
GGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGTGGAGG
GCAGCAGCAGCAACCACACCAGCAAATGGGCATGAATGGCGGCGACATCG
GGGGAAGCCAGGAAAGCAGTGCGGGAGAAGGAGGTGAGTGTGATCTATGA
GTGACATGCTTGGTTGCGTTTTTTTCCCCTGTTCAACGGCAAGTGGCACT
CATTTCACCCTTTCCTTCCCCCCCTCTCTCTCCCCAATCTAGGCGAGATT
CCCGGCATAGGACCGACGCGGCACATCTACACGTCGCCCGATGGGAAGCG
GATGGAAATCAGGGAGGTCTGGGTCGAAAATTTGGACCTAGAGATGACCG
CTATCCGGGAGGTTGGTGGAGAGGGAGGGAGGGAGGGAGGGCAGGATAAG
ACACGGAGAGCGAGGTGAAGGACAATAAATTGTCGTGCCAACTTCTTACA
GTATCGAAGGTACCCACATTTTTATTTTTCACGCATCCTCCTCTTTCTCT
CCATCCCTCGCTAAGGTGGTGGAGAGGTATCCATACGTGGCAATGGACAC
GGAGTTTCCCGGCGTCGTTGCCCGGCCAGTCGGAGACGTGACGGCCGCAG
ATTATCAATACAAGACCTTGAAGTGCAATGTGGATTTGCTGAAGGTAAAA
GAAGGAGGGAGAACAGGAGAGTAGCAGGGAAGGGTTGTGCGTGTTCGACT
TCTACCAGACGACCGACATGCGGGCCCCGCCCTCCGTCCCCCACTGCTTC
CGTCCCTTTCATCTCTCTTAGATCATCCAGCTAGGCCTCTCCTTTGCCGA
TGCCGAGGGCAACAGCCCCCCAGACTGTCCCACCTGGCAGCTCAACTTCA
AATTTTCTCTAAACGACGACATGTACGCCGAGGACTCGATCGAGCTGTTG
AAGCAGAGCGGGATTGATTTCTCGAAGCATGAGGTGAGAAGGGTGGGAGG
GGGAGGGGGAAGTAGGGAGGGATAACCCTGATTGTGCTGTCAACAAACTG
TGCGATATTGACGACCTCTGTCTTCAGCCTCCATTTATTCTCCCCCTCTC
CCACCCTCATTCATTTCCCCCCGCAGCATCATGGCATCGACGTGCCCCGG
TTCGGGGAGCTGCTCATGACTAGCGGCCTGGTGCTGATGGACGATGTGCG
TTGGATCTCTTTTCACTCGGGCTATGACTTCGGATATCTGCTTAAGGTGC
TCACCTGCTCCGCCTTGCCCGCCGATGAGAATGGGTGCGTCGTCTCTCCC
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CATTGTGTATGCGCGTGCGAACAAATCAGCGGACTAGTAGGTGTCACATC
AGCGGCCTAGTAGGTGTCACGTCAGTAATTTGTCTTACACCATTCACCGT
TGCCTCCCGTCCCTCCCTCCCTCCCTCCCTTGTCGTCAGATTCTTCGACC
TTCTTCGCACTTATTTCCCCTGCTTCTACGACATCAAGTATCTCATGACG
GCCTGTAATGGCCTACACGGAGGCCTCCAGAAAATCGGTACGTCCTCCCT
TCACCCCCCCCCCCCCTCCTTCCCATATCCCCTGAAACAGTCACCTCGTA
TTGCATCTTCGACTCCCTCTTCCCCTCCATTGCTCTCTCCCTCTGGTGTG
GCCTGTGCTACCTCCGTACAAGCTGGCAGCAAAACCCTCTGTCTCACATA
CGCATCGCCCTCCCCCCTTCCCTCCCCCTCTTTCTCTCTGCAGCCGAAGA
GCTGTCCGTGGCACGCATAGGCCCTATGCACCAAGCCGGCAGCGACTCCC
TCCTGACCGCACAGACCTTCTTCCGCCTTTGCACGGTCTCCTTCAACGGC
CTCGGCAATCTGAGCGACGAGAAGTTCAAGGGCGAGCTCTTCGGGTGCGT
CTCGGTTTCTTCCTTCCCCGTCTTATCCTCTTTCTTCTCGTTGAGTGCTC
TCTCTTCCCCCTATTTACCCACTCCTTTTTTTGGGCCCTATACCCTCCTC
TCTCTTCCTTCCTCCCTCCTTAGACTGGGGCATAACCATACGGTGTACCG
GAACAAGATGCAGGCCACCAACCGACAGCAACAAGGCCATGGCCACGGAG
GTAAGGAAGCTCACAGACATGTACACTCACCCGACCTGCTCTCTGTCCCC
CCTTTTCTCCGTCCTCTGTCTTTCTTGGTGTGTAAACCTCATTTCTAACA
ACGTTTCTCTCTTCACTAGCGCAAATGATCCACCTGCCTCTCCCTTTCCT
CCCTCCCTCCATACTTCCCTCCTTCCCTTCCCTCCCTCTTCCTCTCTCCA
GGGCACGGCGGGCATGGACAAGCCCCCCCTGCACTCGAGCGGAATGACTC
GACCAGCAGTTCTCAGTCTGTCGCAGTGTCAACTTCGGCAGCGGGAAAGA
CAGGTAGGTCAGATAGAGGACATTCGGGAGGGAGGGAAGAGAAAGGGTGG
GAGCGGATGCAGGGCTGGTGCATTTGCTCTGATATCTGTTTTGCTGAACA
TCTTCCTCCTCAAGTTCCCCACCCATTCCGAGTACTTTACTGGATGCCTT
CTCTTATCTTTAAAATACCACAACACCAGCAGCAGACAGCGCCGCCTCGC
CCACGACAACAGGCGCCTCTGGAGGGATTGATGGGGACGAAAAGCTCGTG
CCAGAGGAATACACGGCCACTGGAGGGTCTTGAGGAAGAAGCGTTAGAGC
GATGACGACGTGTATGTAAAGGAGGTTTGAGGGACCGAGAGGAGGGAAGC
AAAAGGAGAAAAGAGAGTTAGTGGGTGTGAATTGGTTAGGCACTTTATTC
CCTAAAAAAGGAAACAGCTCAAGCCG back to topCoding sequence (CDS) from alignment at chr12:1127976..1131301- >NO12G03930.1 ID=NO12G03930.1|Name=NO12G03930.1|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at chr12:1127976..1131301- (Nannochloropsis oceanica)
ATGGCATCTAATTACAGGCAAACCCACCAACAACAGTACCGTTACTCATC
CGCGGCGTCGCCTAAATCATCAGGCAGCAGCAGCAGTAAGGACCTCAAGA
AAGGATCAAACGCAAGAGAGCAAGAGGCCAGCCTGGGGTCTCTTCTCTTC
CCCGAGGGGCAGCAGACAGCAGATTCACCACCAGCACCGCCAGGACCGGC
GACCGGGGATCAGCAAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAG
GTGGAGGGCAGCAGCAGCAACCACACCAGCAAATGGGCATGAATGGCGGC
GACATCGGGGGAAGCCAGGAAAGCAGTGCGGGAGAAGGAGGCGAGATTCC
CGGCATAGGACCGACGCGGCACATCTACACGTCGCCCGATGGGAAGCGGA
TGGAAATCAGGGAGGTCTGGGTCGAAAATTTGGACCTAGAGATGACCGCT
ATCCGGGAGGTGGTGGAGAGGTATCCATACGTGGCAATGGACACGGAGTT
TCCCGGCGTCGTTGCCCGGCCAGTCGGAGACGTGACGGCCGCAGATTATC
AATACAAGACCTTGAAGTGCAATGTGGATTTGCTGAAGATCATCCAGCTA
GGCCTCTCCTTTGCCGATGCCGAGGGCAACAGCCCCCCAGACTGTCCCAC
CTGGCAGCTCAACTTCAAATTTTCTCTAAACGACGACATGTACGCCGAGG
ACTCGATCGAGCTGTTGAAGCAGAGCGGGATTGATTTCTCGAAGCATGAG
CATCATGGCATCGACGTGCCCCGGTTCGGGGAGCTGCTCATGACTAGCGG
CCTGGTGCTGATGGACGATGTGCGTTGGATCTCTTTTCACTCGGGCTATG
ACTTCGGATATCTGCTTAAGGTGCTCACCTGCTCCGCCTTGCCCGCCGAT
GAGAATGGATTCTTCGACCTTCTTCGCACTTATTTCCCCTGCTTCTACGA
CATCAAGTATCTCATGACGGCCTGTAATGGCCTACACGGAGGCCTCCAGA
AAATCGCCGAAGAGCTGTCCGTGGCACGCATAGGCCCTATGCACCAAGCC
GGCAGCGACTCCCTCCTGACCGCACAGACCTTCTTCCGCCTTTGCACGGT
CTCCTTCAACGGCCTCGGCAATCTGAGCGACGAGAAGTTCAAGGGCGAGC
TCTTCGGACTGGGGCATAACCATACGGTGTACCGGAACAAGATGCAGGCC
ACCAACCGACAGCAACAAGGCCATGGCCACGGAGGGCACGGCGGGCATGG
ACAAGCCCCCCCTGCACTCGAGCGGAATGACTCGACCAGCAGTTCTCAGT
CTGTCGCAGTGTCAACTTCGGCAGCGGGAAAGACAGCAGACAGCGCCGCC
TCGCCCACGACAACAGGCGCCTCTGGAGGGATTGATGGGGACGAAAAGCT
CGTGCCAGAGGAATACACGGCCACTGGAGGGTCTTGA back to top
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