NO12G03570.1, NO12G03570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03570.1
Unique NameNO12G03570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1112
Alignment locationchr12:975679..976790 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:975679..976790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03570.1 vs.
Match: EWM25686.1 (Putative small multi-drug export [Nannochloropsis gaditana])

HSP 1 Score: 322.8 bits (826), Expect = 1.300e-84
Identity = 198/339 (58.41%), Postives = 238/339 (70.21%), Query Frame = 0 
Query:    9 PLLLIALAATTTYTNAAVLFPSTRHAAFFPTTAVAGLAATTPLRAST---GPYSSYSSSTSIVNRRNPARTAAFLHMSTSSSSSSSSSSVPLLFLKTKGGKT--PPMTSPP-VSPSPERRQRTRRLLALASAGVALALITCTTSIPQALAAAVEKGEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPVGLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVLEKKLKDMTGARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIVSAAAIMTALVLAGLWGAVAVGGGLLVSLVVQQLSKRGKDQK 342
            PL+L+  A  T  +  + L       AF P T   GL     +R  T    P+ SY S+    +R   +  A       S S ++  S++P LF  + GG T  PP +S   + PS  R   TRR++A A A   L  +T  TS+P+ALAAAVE GEHLHLGQR+A  +  +TGWP+WV LM ISALPVVELRGGVPVGLWMGIP AQTF LAC+GN +PVP IL++L+N PWLMEKVTPVLEKKLKD TGA+MNWQALA+FVGVPLPGTGAWTGAAIAALFKLSYAES  G+VVGI+SAAAIMTALV AG+WGA+AVGGGLL+S   QQL +R K++K
Sbjct:   10 PLVLVLAAFLTANSMPSRL-------AFLPATT--GLPIAKSIRLPTHGPSPFHSYPSNRPAFSRGCTSSEAP----GFSFSKATPMSTIPSLFKISGGGNTSRPPASSTKSILPSTPR---TRRVVAWACALATLLFMTTATSVPRALAAAVEHGEHLHLGQRVAKTIGTRTGWPNWVTLMAISALPVVELRGGVPVGLWMGIPAAQTFLLACLGNLIPVPLILLVLRNTPWLMEKVTPVLEKKLKDTTGAKMNWQALAIFVGVPLPGTGAWTGAAIAALFKLSYAESFLGIVVGILSAAAIMTALVKAGMWGAIAVGGGLLISFAAQQLGER-KEKK 331
The following BLAST results are available for this feature:
BLAST of NO12G03570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25686.11.300e-8458.41Putative small multi-drug export [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03570NO12G03570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03570.1NO12G03570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03570.1.cds1NO12G03570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03570.1 ID=NO12G03570.1|Name=NO12G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp
ACAGAGACGAAACTATGCGCCAACCCTTGCTCCGCGGTCCCCTCCTTCTC
ATCGCCTTGGCCGCTACTACTACGTACACCAATGCGGCAGTGCTCTTCCC
GTCGACGCGGCACGCTGCATTTTTTCCCACGACTGCTGTGGCAGGCCTAG
CCGCCACCACCCCACTCCGGGCTTCGACAGGTCCCTATTCCTCTTATTCC
AGTAGCACTAGCATTGTCAACAGACGGAACCCCGCACGGACCGCGGCCTT
CCTGCACATGTCCACATCCTCCTCTTCCTCCTCTTCTTCTTCATCCGTCC
CACTACTATTTCTTAAAACGAAGGGCGGTAAGACCCCACCCATGACCTCT
CCTCCTGTCTCCCCCTCCCCTGAGCGTCGTCAACGCACCCGCCGGCTCCT
TGCTCTAGCCAGTGCTGGCGTCGCTTTGGCGCTCATCACTTGCACCACGT
CCATCCCCCAGGCGCTGGCCGCGGCAGTTGAAAAAGGAGAGCACCTTCAC
CTTGGACAACGCCTTGCGAATGCCGTCCGCGTCAAAACCGGATGGCCTGA
CTGGGTCATTCTCATGGTCATCTCGGCACTACCAGTCGTCGAGCTTCGAG
GCGGGGTTCCCGTGGGGCTTTGGATGGGTATCCCTCCTGCGCAGACTTTC
GCGCTGGCCTGCGTGGGGAACTTCGTGCCGGTGCCCTTTATCTTAATGCT
GCTAAAGAATGTGCCCTGGTTGATGGAGAAGGTGACGCCGGTGTTGGAAA
AGAAGCTGAAAGATATGACCGGGGCCAGGATGAACTGGCAAGCCTTGGCG
GTGTTTGTGGGCGTGCCATTGCCAGGGACGGGCGCATGGACGGGAGCAGC
GATTGCGGCCTTGTTTAAGTTGTCATATGCTGAGTCGTTGTTTGGAGTGG
TGGTAGGCATTGTCTCGGCGGCTGCCATCATGACGGCCTTGGTGTTGGCT
GGCTTGTGGGGGGCGGTAGCAGTGGGAGGGGGTTTGCTAGTGAGTTTGGT
GGTGCAGCAGCTGAGCAAGAGGGGAAAGGACCAGAAGTGACGAAAAGGAA
GTGGGAGGGTGAGGGAAGGGAGGTTAGAAATTAAAGAATCAAGAAAAAAA
GTAACCATATCC
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protein sequence of NO12G03570.1

>NO12G03570.1-protein ID=NO12G03570.1-protein|Name=NO12G03570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MRQPLLRGPLLLIALAATTTYTNAAVLFPSTRHAAFFPTTAVAGLAATTP
LRASTGPYSSYSSSTSIVNRRNPARTAAFLHMSTSSSSSSSSSSVPLLFL
KTKGGKTPPMTSPPVSPSPERRQRTRRLLALASAGVALALITCTTSIPQA
LAAAVEKGEHLHLGQRLANAVRVKTGWPDWVILMVISALPVVELRGGVPV
GLWMGIPPAQTFALACVGNFVPVPFILMLLKNVPWLMEKVTPVLEKKLKD
MTGARMNWQALAVFVGVPLPGTGAWTGAAIAALFKLSYAESLFGVVVGIV
SAAAIMTALVLAGLWGAVAVGGGLLVSLVVQQLSKRGKDQK*
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mRNA from alignment at chr12:975679..976790+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03570.1 ID=NO12G03570.1|Name=NO12G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp|location=Sequence derived from alignment at chr12:975679..976790+ (Nannochloropsis oceanica)
ACAGAGACGAAACTATGCGCCAACCCTTGCTCCGCGGTCCCCTCCTTCTC
ATCGCCTTGGCCGCTACTACTACGTACACCAATGCGGCAGTGCTCTTCCC
GTCGACGCGGCACGCTGCATTTTTTCCCACGACTGCTGTGGCAGGCCTAG
CCGCCACCACCCCACTCCGGGCTTCGACAGGTCCCTATTCCTCTTATTCC
AGTAGCACTAGCATTGTCAACAGACGGAACCCCGCACGGACCGCGGCCTT
CCTGCACATGTCCACATCCTCCTCTTCCTCCTCTTCTTCTTCATCCGTCC
CACTACTATTTCTTAAAACGAAGGGCGGTAAGACCCCACCCATGACCTCT
CCTCCTGTCTCCCCCTCCCCTGAGCGTCGTCAACGCACCCGCCGGCTCCT
TGCTCTAGCCAGTGCTGGCGTCGCTTTGGCGCTCATCACTTGCACCACGT
CCATCCCCCAGGCGCTGGCCGCGGCAGTTGAAAAAGGAGAGCACCTTCAC
CTTGGACAACGCCTTGCGAATGCCGTCCGCGTCAAAACCGGATGGCCTGA
CTGGGTCATTCTCATGGTCATCTCGGCACTACCAGTCGTCGAGCTTCGAG
GCGGGGTTCCCGTGGGGCTTTGGATGGGTATCCCTCCTGCGCAGACTTTC
GCGCTGGCCTGCGTGGGGAACTTCGTGCCGGTGCCCTTTATCTTAATGCT
GCTAAAGAATGTGCCCTGGTTGATGGAGAAGGTGACGCCGGTGTTGGAAA
AGAAGCTGAAAGATATGACCGGGGCCAGGATGAACTGGCAAGCCTTGGCG
GTGTTTGTGGGCGTGCCATTGCCAGGGACGGGCGCATGGACGGGAGCAGC
GATTGCGGCCTTGTTTAAGTTGTCATATGCTGAGTCGTTGTTTGGAGTGG
TGGTAGGCATTGTCTCGGCGGCTGCCATCATGACGGCCTTGGTGTTGGCT
GGCTTGTGGGGGGCGGTAGCAGTGGGAGGGGGTTTGCTAGTGAGTTTGGT
GGTGCAGCAGCTGAGCAAGAGGGGAAAGGACCAGAAGTGACGAAAAGGAA
GTGGGAGGGTGAGGGAAGGGAGGTTAGAAATTAAAGAATCAAGAAAAAAA
GTAACCATATCC
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Coding sequence (CDS) from alignment at chr12:975679..976790+

>NO12G03570.1 ID=NO12G03570.1|Name=NO12G03570.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr12:975679..976790+ (Nannochloropsis oceanica)
ATGCGCCAACCCTTGCTCCGCGGTCCCCTCCTTCTCATCGCCTTGGCCGC
TACTACTACGTACACCAATGCGGCAGTGCTCTTCCCGTCGACGCGGCACG
CTGCATTTTTTCCCACGACTGCTGTGGCAGGCCTAGCCGCCACCACCCCA
CTCCGGGCTTCGACAGGTCCCTATTCCTCTTATTCCAGTAGCACTAGCAT
TGTCAACAGACGGAACCCCGCACGGACCGCGGCCTTCCTGCACATGTCCA
CATCCTCCTCTTCCTCCTCTTCTTCTTCATCCGTCCCACTACTATTTCTT
AAAACGAAGGGCGGTAAGACCCCACCCATGACCTCTCCTCCTGTCTCCCC
CTCCCCTGAGCGTCGTCAACGCACCCGCCGGCTCCTTGCTCTAGCCAGTG
CTGGCGTCGCTTTGGCGCTCATCACTTGCACCACGTCCATCCCCCAGGCG
CTGGCCGCGGCAGTTGAAAAAGGAGAGCACCTTCACCTTGGACAACGCCT
TGCGAATGCCGTCCGCGTCAAAACCGGATGGCCTGACTGGGTCATTCTCA
TGGTCATCTCGGCACTACCAGTCGTCGAGCTTCGAGGCGGGGTTCCCGTG
GGGCTTTGGATGGGTATCCCTCCTGCGCAGACTTTCGCGCTGGCCTGCGT
GGGGAACTTCGTGCCGGTGCCCTTTATCTTAATGCTGCTAAAGAATGTGC
CCTGGTTGATGGAGAAGGTGACGCCGGTGTTGGAAAAGAAGCTGAAAGAT
ATGACCGGGGCCAGGATGAACTGGCAAGCCTTGGCGGTGTTTGTGGGCGT
GCCATTGCCAGGGACGGGCGCATGGACGGGAGCAGCGATTGCGGCCTTGT
TTAAGTTGTCATATGCTGAGTCGTTGTTTGGAGTGGTGGTAGGCATTGTC
TCGGCGGCTGCCATCATGACGGCCTTGGTGTTGGCTGGCTTGTGGGGGGC
GGTAGCAGTGGGAGGGGGTTTGCTAGTGAGTTTGGTGGTGCAGCAGCTGA
GCAAGAGGGGAAAGGACCAGAAGTGA
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Synonyms
Publications