Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr12 genome chr12:948655..951332 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G03470.1 vs.
Match: EWM25695.1 (hypothetical protein Naga_100222g10 [Nannochloropsis gaditana])
HSP 1 Score: 120.6 bits (301), Expect = 2.200e-23
Identity = 123/301 (40.86%), Postives = 152/301 (50.50%), Query Frame = 0
Query: 472 LDVQALLQEDEDEDEDEEAAGAARAVGVAAVAAEIDYSALLLEEDESEGEGEEGKEEGHGCHGGAENREKLAIGGKEGGKEGEKEG-GWKEEDDDLAILMATAGEMVDGDKDEEEEEEEDGEKKERMKKREGRKEEEEEEEEAEDVAEEGMDDDLAFLMGLGEIGDGGGGGREGGEEGWRGGRGLASPSHRWPPGVERGGGEEGGKEGEEGRKVPGIRGLKVD-DLSEVALEMPVERKEDVRLYGILTRLVRSGR--GGRDRGREGGREEGCWAVRLEDCFLLAPGREVLLERVDLVVKHD 769
+DV+ALL+E+EDE+EDEE +ED+ E E EEG G G G E L + G+ GEKEG G +EEDDDLA+L+AT+GE+ D E+G +EG +EE+ EEEE G D+DLAFL+ LGE G+E EE GG P R EE + + D DL +V MP E D ++ G LTRL RSGR GGR+ GREGGREEG W +RLEDCFL P REVL ERVD VK +
Sbjct: 28 VDVRALLEEEEDEEEDEEE-----------------------DEDKEEDEDEEGN--GRGEKEGGRGHEGL-LRGRRRRVHGEKEGSGPREEDDDLALLLATSGEVQD----------EEG--------KEGVEEEDREEEEGG-----GEDEDLAFLLSLGE-----AHGKEEEEEEEEGGGVCLPPPARL----------HAASHAEEEKVKARCAWQESDPDLGDVG--MPEEGAADAKICGRLTRLNRSGRKEGGREGGREGGREEGVWKLRLEDCFLWTPDREVLFERVDFRVKQN 262
The following BLAST results are available for this feature:
BLAST of NO12G03470.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 2.20e-23 / Id = 40.86 Sequence EWM25695.1
Match Name E-value Identity Description
EWM25695.1 2.200e-23 40.86 hypothetical protein Naga_100222g10 [Nannochlorops... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO12G03470.1 ID=NO12G03470.1|Name=NO12G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2678bp back to top protein sequence of NO12G03470.1
>NO12G03470.1-protein ID=NO12G03470.1-protein|Name=NO12G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=771bp back to top mRNA from alignment at chr12:948655..951332+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03470.1 ID=NO12G03470.1|Name=NO12G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2678bp|location=Sequence derived from alignment at chr12:948655..951332+ (Nannochloropsis oceanica)ATGGCAAGCAACAGCAACTGCCCCTACACCGC
AGCGGCAGCGCCACCAACCCCTTCCATCAATGATGAAGATATTGTCCCGC
TTAAAACTCTGTCTCGCGGTGTTGTTCAAGCCTACCGAGGGGTGGTGGAA
CGCGTTTTGCCTGCCTTTGCTGCCTTGCTGCAACTCGACCATTCGGATGG
ATTATCGGAGGCAGAAACAGAAGCATCGACACAGAGACTCAAGTTGTTGT
GGTTAAACTCGATGAAGAAAAGATTTGGTGTGGACCTGGGGACGATGGTC
ATGTCGGATGCCCCGCCGCCAGCGGAGCAAAGAACGAGGAAAGGGAGGAA
GAAAGGGAGGAGGAAGAAAGGAGGAAAACGAGAAGCAGAAGGAGGATCAG
GAAGAGATAGTGAAGAAGAGAGTAGAAACAATAATAGTGGTGGCAGCAGC
GACGGCAGCAGTAGCAGCGACAGTGGTAGTTCCCTGGAAGAGGAGGGGGA
GGAGAAACAGGAGGAAAGACGGATTCGAGCCATCAAAGCATCGCAGCTTT
CTAGAACCTTTCGGTGGACCAGCCCGCCAAGACCCGCGGGGTCTTCTAGA
CGGGAGAGGATAAGACAAAGACATGATGTGGAGGGGAAGGAGGAGGGGGA
GGAAGGAGATGGAAGAGGGGTGAGGCTGGGCCGTCCTAGAAGCTACATGG
CGCCACCGGGTTTGGGGGCAATAGCTACAGCACGCTCTGCTGCCGCTGCT
GCCACTGCTGCACCCTCTCCCTTACCTTTGTCGGTTCACAAGGGGGAGGG
AGAGAAGGAAGGAGGGCGAGAAGATCGTGCGGGCCAACGGGCCAGGAGAT
GGAGGCAAAAGCAGCACAAGGCAGGGAGCCAGAAGCCGTCCCAGACAATC
ACGAACACAGACACAATACCTCCTGCCACCGACGGGGAACCCTACCTTCC
CCTTGGCAATCCTGCTAGGCAGCAGCAGCAGCAGCAGCGACGACGGCGGA
TCCCATCTCCAGGCGTGATCGGGACAACCTCCCTCCTCGTCCCCAACTCC
CAAACGTCGCCAATGGAATTATCTTCCTCATCCTCTCCTGTCGAAGGTCA
GGGAGGAAAACGCGGAAAAAGGAGTAACACCCTCCTTTGTCCTCCAGTCA
CCAGCGGCAGAAACAGCAGCGATATCAACAGCACGAGCAGGAGTGGAAGC
ACTCCGGCTTTCCCCCACCCTCCTCTTCCTCCTCCTCCAATCTCCCGTCC
TGCTACGAAATCTCTTCGAAGGAAAGCGGGGGAAGTCGGCTACTGCAGCA
GCAGTAGCAGCAGCACCTCGTGGAGGAATGGTGTGACACGCCCCTCTCTT
CCTCCCTTCTTTCCCTCTCCTCTTCTTCCTCCCCTCCCTCATCCTCCTTC
TCTTGAGCAGCAGCAGCAGCAGAAACAGCCACTAGACGTGCAAGCTTTGC
TTCAAGAGGACGAGGACGAGGACGAGGATGAGGAAGCAGCAGGGGCAGCA
CGAGCTGTAGGCGTAGCAGCAGTGGCAGCAGAGATTGATTATTCTGCTTT
ATTGTTGGAGGAGGATGAGAGCGAGGGCGAGGGAGAGGAAGGGAAGGAGG
AAGGGCATGGATGTCATGGAGGGGCGGAGAATCGAGAGAAGCTTGCAATA
GGAGGGAAGGAGGGAGGGAAGGAGGGAGAAAAGGAGGGAGGGTGGAAGGA
GGAGGACGACGATCTTGCCATTCTGATGGCCACTGCCGGAGAGATGGTGG
ATGGGGACAAGGACGAAGAAGAGGAAGAGGAAGAGGATGGCGAGAAAAAG
GAGAGAATGAAAAAGCGGGAAGGAAGAAAGGAGGAGGAGGAGGAGGAGGA
GGAGGCAGAGGATGTGGCAGAAGAGGGAATGGATGACGATTTAGCCTTCC
TCATGGGTTTGGGAGAAATTGGGGATGGTGGAGGGGGAGGAAGGGAAGGA
GGAGAGGAGGGATGGCGTGGGGGGAGAGGGCTTGCATCTCCCTCGCATCG
ATGGCCTCCGGGTGTGGAGAGGGGGGGAGGGGAGGAGGGAGGGAAGGAGG
GAGAGGAGGGTAGGAAGGTACCAGGAATTAGGGGGTTGAAGGTGGATGAT
CTTTCGGAGGTGGCGTTGGAGATGCCGGTGGAAAGGAAGGAGGATGTGAG
GCTGTACGGGATATTGACGAGGCTGGTGAGGAGTGGGAGAGGGGGAAGGG
ACCGAGGGAGGGAGGGAGGGAGGGAGGAGGGATGTTGGGCGGTGCGGTTG
GAAGACTGCTTCTTACTGGCCCCGGGGAGAGAGGTGTTGTTGGAGCGGGT
TGACTTGGTGGTGAAGCATGACTTGGACTAG back to top Coding sequence (CDS) from alignment at chr12:948655..951332+
>NO12G03470.1 ID=NO12G03470.1|Name=NO12G03470.1|organism=Nannochloropsis oceanica|type=CDS|length=2313bp|location=Sequence derived from alignment at chr12:948655..951332+ (Nannochloropsis oceanica) back to top