NO12G03240.2, NO12G03240.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03240.2
Unique NameNO12G03240.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4909
Alignment locationchr12:896673..902823 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:896673..902823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G03240.2 vs.
Match: EWM25730.1 (superkiller viralicidic activity 2-like 2 [Nannochloropsis gaditana])

HSP 1 Score: 1123.6 bits (2905), Expect = 0.000e+0
Identity = 597/733 (81.45%), Postives = 629/733 (85.81%), Query Frame = 0 
Query:   19 PSVHTLPPTHNHTEVSMDDGDLNDLFGAFDGDDVAETVEPIAPPPISPASPTATKRKSISTSEVAVAAREGNGNRNNDEGYNENEEDDEAGKEGRSKRPRKSDGNDPGPSKGVQPTITQHQEIITPDGRRVISFSALPADYVAHDFMPPAQPAKTYAFPLDPFQQAAIGFIEKGESVLVAAHTSAGKTVTAEYAIAMSLQKKQRVIYTSPIKALSNQKYRDMAEEFGDVGLMTGDITINPSATCLIMTTEILRSMLYRGSEIMREVAWVIYDEIHYMRDKDRGVVWEESIILLPHKVRFVFLSATIPNSQEFAGWIATIHHQPCHVVYTDYRPVPLQHYIFPSGGVGLYLVVDEKSRFREENFQKAMAVLQAEGGEEEGASKKKSGGGREGGKGAGQQSELGKIVRLIMERSYDPVIIFSFSKRECEAYALKMGKLDFNEEGEKELVEQVFNNAIDSLSEEDKTLPQVVSLLPLLKRGVGIHHGGLLPILKEIIEILFQEGLIKCLFATETFSIGINMPAKTVVFTQCTKFDGKDFRWVTPGEYIQMSGRAGRRGKDDRGIVIMMMNSKMEPDICKTMLYGEPDKLYSSYHVSYNMLLNMLRVQGANPEFLVRSSFHQYQQESAAPALEKEAAELEEAAREVTIEGGKEGEAEVAEYFAWNNQLEGIKKEMRKYTQDPDVVLSFLKKGRLVCVKEEGKEGGREGAKEWGWGAVVGYKAVDVSKARAGLPGGGG 752
            P++  + P    + +SMD G+LNDLFGAFDG+DVAETV PIA P ++PA   A KRK ++     V A  G    NN       + ++E G  G SKR R S+G      KG +PTITQHQEIITPDGRRVISFSALPADY   +F PPA+PAK YAF LDPFQQAAIGFIEKGESVLVAAHTSAGKTVTAEYAIAMSLQKKQRVIYTSPIKALSNQKYRDMAEEFGDVGLMTGDITINPSATCLIMTTEILRSMLYRGSEIMREVAWVIYDEIHYMRDKDRGVVWEESIILLPHKVRFVFLSATIPNSQEFAGWIATIHHQPCHVVYTDYRPVPLQHYIFPSGG GLYLVVDEKSRFRE+NFQKAMAVLQ EGGEEE   KKK+GG        GQQSELGKIVRLIMERSYDPVIIFSFSKRECEAYALKM KLDFNEEGEKELVEQVF NAIDSLSEEDKTLPQVVSLLPLLKRGVGIHHGGLLPILKEIIEILFQEGLIKCLFATETFSIGINMPAKTVVFTQCTKFDGKDFRWVTPGEYIQMSGRAGRRGKDDRGIVIMMM+SKMEPD+CK +LYGEPDKLYSSYHVSYNMLLNMLRVQG NPEFLVRSSFHQYQQE+AAPALEKEA  +E  AR V IEGG EGEA  AEY+A  +Q E IKKEMRKYTQDP++VLSFLKKGRL  V EE  EG R    +WGWGAVVGYK VD  K ++    GGG
Sbjct:   55 PAMPIIQPHGAISSLSMDGGELNDLFGAFDGEDVAETVAPIAAPGLTPAKADA-KRKGLTNG---VKAAGGEMEDNN------GDVEEELGA-GPSKRSRNSEGT--ALDKGQEPTITQHQEIITPDGRRVISFSALPADYTPSEFTPPARPAKEYAFALDPFQQAAIGFIEKGESVLVAAHTSAGKTVTAEYAIAMSLQKKQRVIYTSPIKALSNQKYRDMAEEFGDVGLMTGDITINPSATCLIMTTEILRSMLYRGSEIMREVAWVIYDEIHYMRDKDRGVVWEESIILLPHKVRFVFLSATIPNSQEFAGWIATIHHQPCHVVYTDYRPVPLQHYIFPSGGEGLYLVVDEKSRFREDNFQKAMAVLQGEGGEEESGKKKKNGG-------KGQQSELGKIVRLIMERSYDPVIIFSFSKRECEAYALKMSKLDFNEEGEKELVEQVFTNAIDSLSEEDKTLPQVVSLLPLLKRGVGIHHGGLLPILKEIIEILFQEGLIKCLFATETFSIGINMPAKTVVFTQCTKFDGKDFRWVTPGEYIQMSGRAGRRGKDDRGIVIMMMDSKMEPDVCKAILYGEPDKLYSSYHVSYNMLLNMLRVQGVNPEFLVRSSFHQYQQEAAAPALEKEAESIEAVARGVKIEGGTEGEAAAAEYYACRSQWEEIKKEMRKYTQDPEIVLSFLKKGRLAYVVEETPEGKR----DWGWGAVVGYKVVDGGKVKSKTQEGGG 763
The following BLAST results are available for this feature:
BLAST of NO12G03240.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25730.10.000e+081.45superkiller viralicidic activity 2-like 2 [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03240NO12G03240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03240.2NO12G03240.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03240.2.cds1NO12G03240.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03240.2.cds2NO12G03240.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03240.2.cds3NO12G03240.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03240.2.cds4NO12G03240.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03240.2.cds5NO12G03240.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03240.2.cds6NO12G03240.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03240.2 ID=NO12G03240.2|Name=NO12G03240.2|organism=Nannochloropsis oceanica|type=mRNA|length=4909bp
GGGCCATCTTCAGACTCATGAGAGCACCGCTTGTGGTGGCTTCTTCGAAC
CCTCACCATATATCCTTTAACAACGCGCATACTGCATAGGCATGCCATCG
ACACAGAACATATCCCAACATGAGGACATGGAGCGTGGGACGGCTCAGGG
CGCAATGTCACAGGCACTCCCACCGTCGCAAGGGCACCTTTTGCCTGTGT
CCTCTCTGCAAGCCTCCATGCCTCCAGGGGAGACTGATGAATGCACGTGG
GCGTGCTTTGTGTAAGTGCTTGCCCCGAGAGGAGAATATTCTACACTCTT
TTTCCGTATGAACTTTTATAGTGTTGTGAGTCTCACTAGCTATGAGGGTT
GCGACGTGGAGGGGGCCACGTTGCGGCACGAAGGGTAGAGCTATTCGAGA
GCGGAGCGAGGGTGATAGGCCGTCAAACATTTTCTCACTGTGTCGTGCAC
GCTTTTTTTGCTCTAGGATCTGTCATATTTTGTATGTAAACCGCCCGTTG
TGTATCCTCCGTCTTTCGCTTCACAATACTTATGAGGCATCGCGGCTTGT
GAGTGTGAAATTATGAAACACCAGAGGTCCCGTGCAGGTGGGTAGACGGA
CCCGTCTCCATGGATAACTATATTTGAGTGATTTGAGATGCCTGTCTTTG
GCCTCGATGCGTGGAGTTTCGATATATTGCTGCTTTCATCGAAATCTACC
TTGTCACTCAAAATGGTGGCATCGACGTTCTCCCCCCTCCCTTCCTTTCC
CCCTCCAAACCCCCTTCAATCACAACTACAGAGAGGAATTCATTTGATAC
GCTCGTAACATTGCTCCGGTCCTGTTGGTCAGTGCCATCCTCATTCTCAT
AATCTATTTTGCAATTGTGCACCCCCGAAAGACATAATCTCCCCCTCTCC
GACCCTCCTTCTCTTCCGCTTGTTTCTCAAAATGACGCCCGCGAGACATT
CCCGGAAAGCCCTCTAAATCTGTGTCCACAGCAGAAGGGACCGGGCCGGA
CTGACAGGCAGCAGCATTGAGGCAGGATGGTGGCGTCGGGCAAAGAACTC
CGAAAGGAGAAACAAGGAGGCATGTACATATGGAAAGGTTGAAAGTATAG
AGAAAAAAAGGATTTATTGGAATCTAGATGAAAATCCTCTAGATCTAAAG
AGAGGAATATAATAACAAGTTCTCGTTCGCTCTTTCACCCACTGATCCTT
TTTCCAGTCTTCTTTCGTTTCTTCCTTCTTTAACGCCTTCAAAAAATGCA
CAAGCAGATCAATCATCTACGGCGATGGTTACGATATCCCTCTCCTCCTT
CTCCTCCTCTTTTCTTGCCCATCGTCCCCTCCTTCGGCCCTACTTCCTCA
CTCCCCTCTCCCGCCCCGACCCCCAATCCAACGCCTTCAGGGCCGCCTTC
AACGGCGCCGGCAACGTCTCGTCCTCCTCCTCTCCCTCCATCCCCTCCTC
CCCCACACCCTTGCCTTGAAACACGTACGCGTATCCATAACTCGCTCCAG
TGGCCACTGCATTGGCCCACCAGATGGTGGGCATGTCCTTCGTTAGGAAA
GGCATCCCCAAGCTCACGATCGGGGTTAGCAAAAACGCCACATCTAAAGC
CTTCTTCTCAGTCTGTCCCGGCTTTCGTGCTCTTAATGACGGAATGGTAA
ACATCCAGAAGCTCCAAAACGCGAACGCTCGGACGGGTAACGGTAAGTGG
TCGAATCCCGGCAGTGCATCATATACTACCACTCCTGACAAGGCGACAGC
TCCCAGGGACTGCCCCAAGAACAGATTTTTCAACCACCCACGCATAACCA
GTCGTTTTTCTGTGGCAAGTTGTGTCTCCTTCTTCTGGATTTGCTTTTCG
AGCGTCGCGAGGGCCTTGTTGTCGTCGGTGGTATCGCGCTCGTTCCGCAA
ATTGATCAAATCAAACTCCAGATTAACGACCTTTGAAGGGTTTAGAAGCT
GGTCGAGCTCCACGCCCGTCTCACGCAAGACCTCGTCGCGGATACGTTGC
ACCATTGGATCATCTTCCGAGATGCCCTTACGCTCTTGTTGTTGTTCCCG
TTCCGTGACAGCTGTACGGGTCGCGACAGGTCTTCTAATGCTACTAGTGA
TGCCGATGGCCTGGCTGGAAGCGGGCGAAGGCAGAAGGAACGCATGTGTG
CTTGCGAGCAACAGGGAAGAGACGAGGATCAGGGCGGCGTTGAGCGCCGC
ATGTCTGGCCGTCATGATAAGATGTAGGGGGCTTGAGGTGGGGCACGCGG
GCTTCGACCTAGCCTGACTAAGCGATGCTGTGTAGGTTGAGGGGAGACAA
GCAGTTAGAAAGGAGACCAGGGCAGGCTTCAGGATTGTTAAACAGGGTTG
TACGCAAGTCATCTTGGTGCCTGTATGAGGGGAATGGGTTCTTACTCCTT
TCCCATTCACAAAGAGTCAGATCACGACCGTGGCGGGACTAGGCGGGACT
AGTATATTCCCCGAGTCCTCATCCATTCGCTGGAGGTGGTCCCTATCCTC
GCATCAGTAGCATCACAAAGAGTAGAAGGGGGTGTGGAAAAAATCGTGCG
TCAATAGCATTAAAGTCGCAGTGACTTAATTCGACTTATTTCTTATTTCT
GTGGAGTGCACCCTCGGGAGGGCTTTTTTGATATGCTGTCCCCTCCCGAC
CTCCCCACCCAAAGACGTTGCCCTGCCCCTTACCATCCGTCTGTCCACAC
CTTACCCCCTACACACAACCACACAGAGGTAAGCATGGATGATGGCGATT
TGAACGACCTGTTTGGGGCTTTTGACGGGGACGACGTGGCTGAGACCGTG
GAACCGATCGCGCCCCCGCCCATCTCTCCTGCTTCTCCCACTGCTACCAA
GCGCAAGTCCATCTCAACAAGTGAAGTTGCGGTGGCCGCCAGAGAAGGAA
ATGGCAACCGCAACAATGATGAAGGCTACAATGAGAACGAGGAGGATGAC
GAGGCAGGCAAGGAGGGACGGAGCAAGCGTCCGCGCAAGTCCGATGGCAA
CGACCCTGGTCCCTCAAAGGGTGTGCAACCCACCATCACCCAACACCAAG
AAATCATCACTCCCGACGGCCGGCGCGTCATTTCCTTCTCGGCCCTCCCC
GCCGATTACGTCGCCCACGATTTTATGCCACCCGCGCAGCCTGCCAAGAC
ATATGCCTTTCCCCTCGACCCATTCCAACAAGCCGCCATTGGCTTCATTG
AAAAGGGCGAGTCCGTCCTCGTTGCTGCACACACTTCCGCAGGCAAGACT
GTCACGGCCGAGTACGCCATTGCCATGAGCCTGCAGAAGAAACAACGGGT
GATTTATACGTCGCCAATCAAGGCGTTATCGAATCAGAAGTACCGAGACA
TGGCCGAGGAGTTTGGGGATGTAGGCTTGATGACGGGCGACATCACCATT
AACCCTTCCGCGACCTGCCTCATCATGACCACTGAAATTCTCCGCTCGAT
GCTTTACCGCGGGAGTGAGATCATGCGAGAGGTGGCTTGGGTGATTTACG
ATGAGATTCACTACATGCGGGACAAGGACCGGGGAGTGGTGTGGGAGGAA
AGCATCATCCTCCTCCCCCACAAGGTACGCTTCGTTTTTCTCTCGGCCAC
CATCCCCAACAGCCAAGAATTCGCAGGCTGGATCGCCACCATCCACCACC
AGCCCTGTCACGTCGTTTACACCGATTACCGGCCCGTGCCCTTGCAGCAT
TACATCTTTCCTTCAGGAGGGGTGGGGTTGTACCTGGTCGTGGACGAGAA
GAGTCGGTTCCGAGAGGAAAATTTCCAAAAGGCCATGGCGGTGTTGCAGG
CAGAGGGAGGGGAGGAAGAAGGGGCAAGCAAGAAAAAGAGTGGGGGGGGT
AGGGAGGGAGGGAAGGGAGCGGGGCAGCAGAGCGAATTGGGGAAGATCGT
GCGATTGATTATGGAGAGGTCTTATGACCCTGTGATTATTTTTTCCTTCT
CTAAGAGGGAGTGTGAGGCGTATGCCCTCAAGATGGGGAAGCTGGATTTC
AACGAGGAGGGGGAGAAAGAGCTCGTGGAGCAGGTGTTTAACAACGCCAT
CGACTCCCTCTCGGAGGAGGACAAGACCCTCCCTCAAGTCGTCTCCCTCC
TCCCCCTCCTCAAGCGTGGCGTCGGCATCCATCACGGTGGCCTCCTTCCC
ATTCTTAAGGAAATTATCGAAATCCTCTTCCAGGAAGGATTAATTAAGTG
TTTGTTTGCCACCGAGACCTTCTCCATTGGTATCAACATGCCTGCCAAGA
CCGTTGTCTTCACCCAATGCACCAAATTCGACGGCAAGGACTTCCGGTGG
GTCACCCCAGGGGAATACATCCAGATGAGCGGTCGAGCCGGGCGACGAGG
GAAGGACGACAGGGGGATTGTGATCATGATGATGAACAGCAAGATGGAGC
CTGACATCTGTAAGACCATGCTCTATGGAGAACCGGACAAGCTCTACTCC
TCCTATCACGTGTCCTACAACATGCTCCTTAATATGCTCAGGGTTCAAGG
CGCCAACCCCGAGTTCCTCGTCCGTTCGTCTTTTCACCAGTACCAACAGG
AGTCTGCAGCCCCCGCCCTCGAAAAAGAAGCAGCAGAGTTAGAAGAGGCT
GCGAGGGAGGTCACGATCGAGGGAGGGAAGGAGGGCGAGGCGGAAGTCGC
TGAATATTTTGCGTGGAATAATCAGTTGGAGGGAATCAAGAAGGAGATGA
GAAAATACACTCAGGATCCCGATGTCGTCTTGTCCTTTTTGAAGAAGGGA
AGGTTGGTCTGTGTGAAGGAGGAGGGGAAGGAAGGAGGGAGGGAGGGAGC
GAAGGAGTGGGGGTGGGGAGCTGTAGTAGGGTATAAGGCCGTAGATGTGA
GCAAGGCCAGGGCGGGCTTGCCGGGGGGGGGGGGGCGGTGGTGGGTGCAG
GGAAGGTAG
back to top

protein sequence of NO12G03240.2

>NO12G03240.2-protein ID=NO12G03240.2-protein|Name=NO12G03240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=759bp
MLSPPDLPTQRRCPAPYHPSVHTLPPTHNHTEVSMDDGDLNDLFGAFDGD
DVAETVEPIAPPPISPASPTATKRKSISTSEVAVAAREGNGNRNNDEGYN
ENEEDDEAGKEGRSKRPRKSDGNDPGPSKGVQPTITQHQEIITPDGRRVI
SFSALPADYVAHDFMPPAQPAKTYAFPLDPFQQAAIGFIEKGESVLVAAH
TSAGKTVTAEYAIAMSLQKKQRVIYTSPIKALSNQKYRDMAEEFGDVGLM
TGDITINPSATCLIMTTEILRSMLYRGSEIMREVAWVIYDEIHYMRDKDR
GVVWEESIILLPHKVRFVFLSATIPNSQEFAGWIATIHHQPCHVVYTDYR
PVPLQHYIFPSGGVGLYLVVDEKSRFREENFQKAMAVLQAEGGEEEGASK
KKSGGGREGGKGAGQQSELGKIVRLIMERSYDPVIIFSFSKRECEAYALK
MGKLDFNEEGEKELVEQVFNNAIDSLSEEDKTLPQVVSLLPLLKRGVGIH
HGGLLPILKEIIEILFQEGLIKCLFATETFSIGINMPAKTVVFTQCTKFD
GKDFRWVTPGEYIQMSGRAGRRGKDDRGIVIMMMNSKMEPDICKTMLYGE
PDKLYSSYHVSYNMLLNMLRVQGANPEFLVRSSFHQYQQESAAPALEKEA
AELEEAAREVTIEGGKEGEAEVAEYFAWNNQLEGIKKEMRKYTQDPDVVL
SFLKKGRLVCVKEEGKEGGREGAKEWGWGAVVGYKAVDVSKARAGLPGGG
GRWWVQGR*
back to top

mRNA from alignment at chr12:896673..902823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03240.2 ID=NO12G03240.2|Name=NO12G03240.2|organism=Nannochloropsis oceanica|type=mRNA|length=6151bp|location=Sequence derived from alignment at chr12:896673..902823+ (Nannochloropsis oceanica)
GGGCCATCTTCAGACTCATGAGAGCACCGCTTGTGGTGGCTTCTTCGAAC
CCTCACCATATATCCTTTAACAACGCGCATACTGCATAGGCATGCCATCG
ACACAGAACATATCCCAACATGAGGACATGGAGCGTGGGACGGCTCAGGG
CGCAATGTCACAGGCACTCCCACCGTCGCAAGGGCACCTTTTGCCTGTGT
CCTCTCTGCAAGCCTCCATGCCTCCAGGGGAGACTGATGAATGCACGTGG
GCGTGCTTTGTGTAAGTGCTTGCCCCGAGAGGAGAATATTCTACACTCTT
TTTCCGTATGAACTTTTATAGTGTTGTGAGTCTCACTAGCTATGAGGGTT
GCGACGTGGAGGGGGCCACGTTGCGGCACGAAGGGTAGAGCTATTCGAGA
GCGGAGCGAGGGTGATAGGCCGTCAAACATTTTCTCACTGTGTCGTGCAC
GCTTTTTTTGCTCTAGGATCTGTCATATTTTGTATGTAAACCGCCCGTTG
TGTATCCTCCGTCTTTCGCTTCACAATACTTATGAGGCATCGCGGCTTGT
GAGTGTGAAATTATGAAACACCAGAGGTCCCGTGCAGGTGGGTAGACGGA
CCCGTCTCCATGGATAACTATATTTGAGTGATTTGAGATGCCTGTCTTTG
GCCTCGATGCGTGGAGTTTCGATATATTGCTGCTTTCATCGAAATCTACC
TTGTCACTCAAAATGGTGGCATCGACGTTCTCCCCCCTCCCTTCCTTTCC
CCCTCCAAACCCCCTTCAATCACAACTACAGAGAGGAATTCATTTGATAC
GCTCGTAACATTGCTCCGGTCCTGTTGGTCAGTGCCATCCTCATTCTCAT
AATCTATTTTGCAATTGTGCACCCCCGAAAGACATAATCTCCCCCTCTCC
GACCCTCCTTCTCTTCCGCTTGTTTCTCAAAATGACGCCCGCGAGACATT
CCCGGAAAGCCCTCTAAATCTGTGTCCACAGCAGAAGGGACCGGGCCGGA
CTGACAGGCAGCAGCATTGAGGCAGGATGGTGGCGTCGGGCAAAGAACTC
CGAAAGGAGAAACAAGGAGGCATGTACATATGGAAAGGTTGAAAGTATAG
AGAAAAAAAGGATTTATTGGAATCTAGATGAAAATCCTCTAGATCTAAAG
AGAGGAATATAATAACAAGTTCTCGTTCGCTCTTTCACCCACTGATCCTT
TTTCCAGTCTTCTTTCGTTTCTTCCTTCTTTAACGCCTTCAAAAAATGCA
CAAGCAGATCAATCATCTACGGCGATGGTTACGATATCCCTCTCCTCCTT
CTCCTCCTCTTTTCTTGCCCATCGTCCCCTCCTTCGGCCCTACTTCCTCA
CTCCCCTCTCCCGCCCCGACCCCCAATCCAACGCCTTCAGGGCCGCCTTC
AACGGCGCCGGCAACGTCTCGTCCTCCTCCTCTCCCTCCATCCCCTCCTC
CCCCACACCCTTGCCTTGAAACACGTACGCGTATCCATAACTCGCTCCAG
TGGCCACTGCATTGGCCCACCAGATGGTGGGCATGTCCTTCGTTAGGAAA
GGCATCCCCAAGCTCACGATCGGGGTTAGCAAAAACGCCACATCTAAAGC
CTTCTTCTCAGTCTGTCCCGGCTTTCGTGCTCTTAATGACGGAATGGTAA
ACATCCAGAAGCTCCAAAACGCGAACGCTCGGACGGGTAACGGTAAGTGG
TCGAATCCCGGCAGTGCATCATATACTACCACTCCTGACAAGGCGACAGC
TCCCAGGGACTGCCCCAAGAACAGATTTTTCAACCACCCACGCATAACCA
GTCGTTTTTCTGTGGCAAGTTGTGTCTCCTTCTTCTGGATTTGCTTTTCG
AGCGTCGCGAGGGCCTTGTTGTCGTCGGTGGTATCGCGCTCGTTCCGCAA
ATTGATCAAATCAAACTCCAGATTAACGACCTTTGAAGGGTTTAGAAGCT
GGTCGAGCTCCACGCCCGTCTCACGCAAGACCTCGTCGCGGATACGTTGC
ACCATTGGATCATCTTCCGAGATGCCCTTACGCTCTTGTTGTTGTTCCCG
TTCCGTGACAGCTGTACGGGTCGCGACAGGTCTTCTAATGCTACTAGTGA
TGCCGATGGCCTGGCTGGAAGCGGGCGAAGGCAGAAGGAACGCATGTGTG
CTTGCGAGCAACAGGGAAGAGACGAGGATCAGGGCGGCGTTGAGCGCCGC
ATGTCTGGCCGTCATGATAAGATGTAGGGGGCTTGAGGTGGGGCACGCGG
GCTTCGACCTAGCCTGACTAAGCGATGCTGTGTAGGTTGAGGGGAGACAA
GCAGTTAGAAAGGAGACCAGGGCAGGCTTCAGGATTGTTAAACAGGGTTG
TACGCAAGTCATCTTGGTGCCTGTATGAGGGGAATGGGTTCTTACTCCTT
TCCCATTCACAAAGAGTCAGATCACGACCGTGGCGGGACTAGGCGGGACT
AGTATATTCCCCGAGTCCTCATCCATTCGCTGGAGGTGGTCCCTATCCTC
GCATCAGTAGCATCACAAAGAGTAGAAGGGGGTGTGGAAAAAATCGTGCG
TCAATAGCATTAAAGTCGCAGTGACTTAATTCGACTTATTTCTTATTTCT
GTGGAGTGCACCCTCGGGAGGGCTTTTTTGATATGCTGTCCCCTCCCGAC
CTCCCCACCCAAAGACGTTGCCCTGCCCCTTACCATCCGTCTGTCCACAC
CTTACCCCCTACACACAACCACACAGAGGTAAGCATGGATGATGGCGATT
TGAACGACCTGTTTGGGGCTTTTGACGGGGACGACGTGGCTGAGACCGTG
GAACCGATCGCGCCCCCGCCCATCTCTCCTGCTTCTCCCACTGCTACCAA
GCGCAAGTCCATCTCAACAAGTGAAGTTGCGGTGGCCGCCAGAGAAGGAA
ATGGCAACCGCAACAATGATGAAGGCTACAATGAGAACGAGGAGGATGAC
GAGGCAGGCAAGGAGGGACGGAGCAAGCGTCCGCGCAAGTCCGATGGCAA
CGACCCTGGTCCCTCAAAGGGTGTGCAACCCACCATCACCCAACACCAAG
AAATCATCACTCCCGACGGCCGGCGCGTCATTTCCTTCTCGGCCCTCCCC
GCCGATTACGTCGCCCACGATTTTATGCCACCCGCGCAGCCTGCCAAGAC
ATATGCCTTTCCCCTCGACCCATTCCAACAAGCCGCCATTGGCTTCATTG
AAAAGGGCGAGTCCGTCCTCGTTGCTGCACACACTTCCGCAGGCAAGACT
GTCACGGCCGAGTACGCCATTGCCATGAGCCTGCAGAAGAAACAACGGGT
GATTTATACGTCGCCAATCAAGGCGTTATCGAATCAGAAGTACCGAGACA
TGGCCGAGGAGTTTGGGGATGTAGGCTTGATGACGGTACGTGCGTTTAAG
TGCGAGAAGCCCCCCTTCATCTCACACTGTGCGTTTAGGGGGGGTAAGAT
ACATATGGTTTTCTATATCGGCTTATCTGCGAAGCGTGCTTCGTATTTTA
TACCCTTACCACCCTCTTGGACGAGGAGAGAACCCTGTGCTCATGCCCTC
CCTCCTTCGCTCCCTCCCTCCCTCTTCGCACAGGGCGACATCACCATTAA
CCCTTCCGCGACCTGCCTCATCATGACCACTGAAATTCTCCGCTCGATGC
TTTACCGCGGGAGTGAGATCATGCGAGAGGTGGCTTGGGTGATTTACGAT
GAGATTCACTACATGCGGGACAAGGACCGGGGAGTGGTGTGGGAGGTATG
TTCTCTCTACCCTACCGCCTCCCCTCCCCTCCCTCCCGCCGAATGAAGAC
TGAGTCCTTCCCCCTTCCTTCCTGCCCTCCCTCCCTCCCTTCTCCACCTC
CAGGAAAGCATCATCCTCCTCCCCCACAAGGTACGCTTCGTTTTTCTCTC
GGCCACCATCCCCAACAGCCAAGAATTCGCAGGCTGGATCGCCACCATCC
ACCACCAGCCCTGTCACGTCGTTTACACCGATTACCGGCCCGTGCCCTTG
CAGCATTACATCTTTCCTTCAGGAGGGGTGGGGTTGTACCTGGTCGTGGA
CGAGAAGAGTCGGTTCCGAGAGGAAAATTTCCAAAAGGCCATGGCGGTGT
TGCAGGCAGAGGGAGGGGAGGAAGAAGGGGCAAGCAAGAAAAAGAGTGGG
GGGGGTAGGGAGGGAGGGAAGGGAGCGGGGCAGCAGAGCGAATTGGGGAA
GATCGTGCGATTGATTATGGAGAGGTCTTATGACCCTGTGATTATTTTTT
CCTTCTCTAAGAGGGAGTGTGAGGCGTATGCCCTCAAGATGGGGAAGCTG
GATTTCAACGAGGAGGGGGAGAAAGAGCTCGTGGAGCAGGTAGGGAGCGA
GGGACGGAGGGAGGGAAAATGTATGTCACACGGGAACTTTCGAGAAACGA
TTGTGAGATATGCGCGATGAAGATTGAGAAGGCACGCCGACTGTCATGAA
GAGAGGGGGAAACGCCTGCCGGGGCATTTAAGAGTATCTTTTACATACCT
TCTTTCTCTCTCATGTTAACGTTTTTCTTCCTCACTGCGACCGTCCTTCC
CTTCCTCCCTCCCTCCCTCCCTCCCCAAGGTGTTTAACAACGCCATCGAC
TCCCTCTCGGAGGAGGACAAGACCCTCCCTCAAGTCGTCTCCCTCCTCCC
CCTCCTCAAGCGTGGCGTCGGCATCCATCACGGTGGCCTCCTTCCCATTC
TTAAGGAAATTATCGAAATCCTCTTCCAGGAAGGATTAATTAAGTGTTTG
TTTGCCACCGAGACCTTCTCCATTGGTACGTATCCCCCCTTCTTCCCTCC
CTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTTCCTTTACTCAAGCAG
GGCGCCTGCATAGTTTCTGATGATAACATCATAACACCCTAAAGAATCAT
AAGCGTGAAACCCGAAAGACCTAAAAATACAAAATAATGACACAATTCAA
TAAACAGCCAATAACATTACCGACCAATCAATCAACAAACAAAAATGCGC
GAAATATTTGAAAAAGTTGAAAATGAATTAATTGACACACGATTCCTTTT
CCTTCTCTTTCTGCAGGTATCAACATGCCTGCCAAGACCGTTGTCTTCAC
CCAATGCACCAAATTCGACGGCAAGGACTTCCGGTGGGTCACCCCAGGGG
AATACATCCAGATGAGCGGTCGAGCCGGGCGACGAGGGAAGGACGACAGG
GGGATTGTGATCATGATGATGAACAGCAAGATGGAGCCTGACATCTGTAA
GACCATGCTCTATGGAGGTACGTTCTAGTCTACACTCCCTCCCTATTCAC
TGTAATTATTTAAATGTATTATTTATTCTATTTCTTATTCATCAAAGTTC
ATCGATTAGTTTCGTTTCTATGGTTTTTGAGTGATGAAACCCAATGCTGG
CACCAATCTGAGTGCATCGCCTCATTCGGTGCCCGATTATGAACAGCTAC
TCGGCTCCTACCGCAATTGTGAGTCTCTGACAACGACCAACACATCTACA
AATATTTTCAAAACGAGTAAATTTCTTACCTTTCTCAATGCTACACAGAG
TATCCACCTATGTTTTTAATCGTTCATTTATACATTCTTCCACATTTTTG
TTTGAATGCATGTATCCATGTATATACATCGATTCATATGTACATTTATC
TATTACGCATCCCCCAACACAGAACCGGACAAGCTCTACTCCTCCTATCA
CGTGTCCTACAACATGCTCCTTAATATGCTCAGGGTTCAAGGCGCCAACC
CCGAGTTCCTCGTCCGTTCGTCTTTTCACCAGTACCAACAGGAGTCTGCA
GCCCCCGCCCTCGAAAAAGAAGCAGCAGAGTTAGAAGAGGCTGCGAGGGA
GGTCACGATCGAGGGAGGGAAGGAGGGCGAGGCGGAAGTCGCTGAATATT
TTGCGTGGAATAATCAGTTGGAGGGAATCAAGAAGGAGATGAGAAAATAC
ACTCAGGATCCCGATGTCGTCTTGTCCTTTTTGAAGAAGGGAAGGTTGGT
CTGTGTGAAGGAGGAGGGGAAGGAAGGAGGGAGGGAGGGAGCGAAGGAGT
GGGGGTGGGGAGCTGTAGTAGGGTATAAGGCCGTAGATGTGAGCAAGGCC
AGGGCGGGCTTGCCGGGGGGGGGGGGGCGGTGGTGGGTGCAGGGAAGGTA
G
back to top

Coding sequence (CDS) from alignment at chr12:896673..902823+

>NO12G03240.2 ID=NO12G03240.2|Name=NO12G03240.2|organism=Nannochloropsis oceanica|type=CDS|length=2277bp|location=Sequence derived from alignment at chr12:896673..902823+ (Nannochloropsis oceanica)
ATGCTGTCCCCTCCCGACCTCCCCACCCAAAGACGTTGCCCTGCCCCTTA
CCATCCGTCTGTCCACACCTTACCCCCTACACACAACCACACAGAGGTAA
GCATGGATGATGGCGATTTGAACGACCTGTTTGGGGCTTTTGACGGGGAC
GACGTGGCTGAGACCGTGGAACCGATCGCGCCCCCGCCCATCTCTCCTGC
TTCTCCCACTGCTACCAAGCGCAAGTCCATCTCAACAAGTGAAGTTGCGG
TGGCCGCCAGAGAAGGAAATGGCAACCGCAACAATGATGAAGGCTACAAT
GAGAACGAGGAGGATGACGAGGCAGGCAAGGAGGGACGGAGCAAGCGTCC
GCGCAAGTCCGATGGCAACGACCCTGGTCCCTCAAAGGGTGTGCAACCCA
CCATCACCCAACACCAAGAAATCATCACTCCCGACGGCCGGCGCGTCATT
TCCTTCTCGGCCCTCCCCGCCGATTACGTCGCCCACGATTTTATGCCACC
CGCGCAGCCTGCCAAGACATATGCCTTTCCCCTCGACCCATTCCAACAAG
CCGCCATTGGCTTCATTGAAAAGGGCGAGTCCGTCCTCGTTGCTGCACAC
ACTTCCGCAGGCAAGACTGTCACGGCCGAGTACGCCATTGCCATGAGCCT
GCAGAAGAAACAACGGGTGATTTATACGTCGCCAATCAAGGCGTTATCGA
ATCAGAAGTACCGAGACATGGCCGAGGAGTTTGGGGATGTAGGCTTGATG
ACGGGCGACATCACCATTAACCCTTCCGCGACCTGCCTCATCATGACCAC
TGAAATTCTCCGCTCGATGCTTTACCGCGGGAGTGAGATCATGCGAGAGG
TGGCTTGGGTGATTTACGATGAGATTCACTACATGCGGGACAAGGACCGG
GGAGTGGTGTGGGAGGAAAGCATCATCCTCCTCCCCCACAAGGTACGCTT
CGTTTTTCTCTCGGCCACCATCCCCAACAGCCAAGAATTCGCAGGCTGGA
TCGCCACCATCCACCACCAGCCCTGTCACGTCGTTTACACCGATTACCGG
CCCGTGCCCTTGCAGCATTACATCTTTCCTTCAGGAGGGGTGGGGTTGTA
CCTGGTCGTGGACGAGAAGAGTCGGTTCCGAGAGGAAAATTTCCAAAAGG
CCATGGCGGTGTTGCAGGCAGAGGGAGGGGAGGAAGAAGGGGCAAGCAAG
AAAAAGAGTGGGGGGGGTAGGGAGGGAGGGAAGGGAGCGGGGCAGCAGAG
CGAATTGGGGAAGATCGTGCGATTGATTATGGAGAGGTCTTATGACCCTG
TGATTATTTTTTCCTTCTCTAAGAGGGAGTGTGAGGCGTATGCCCTCAAG
ATGGGGAAGCTGGATTTCAACGAGGAGGGGGAGAAAGAGCTCGTGGAGCA
GGTGTTTAACAACGCCATCGACTCCCTCTCGGAGGAGGACAAGACCCTCC
CTCAAGTCGTCTCCCTCCTCCCCCTCCTCAAGCGTGGCGTCGGCATCCAT
CACGGTGGCCTCCTTCCCATTCTTAAGGAAATTATCGAAATCCTCTTCCA
GGAAGGATTAATTAAGTGTTTGTTTGCCACCGAGACCTTCTCCATTGGTA
TCAACATGCCTGCCAAGACCGTTGTCTTCACCCAATGCACCAAATTCGAC
GGCAAGGACTTCCGGTGGGTCACCCCAGGGGAATACATCCAGATGAGCGG
TCGAGCCGGGCGACGAGGGAAGGACGACAGGGGGATTGTGATCATGATGA
TGAACAGCAAGATGGAGCCTGACATCTGTAAGACCATGCTCTATGGAGAA
CCGGACAAGCTCTACTCCTCCTATCACGTGTCCTACAACATGCTCCTTAA
TATGCTCAGGGTTCAAGGCGCCAACCCCGAGTTCCTCGTCCGTTCGTCTT
TTCACCAGTACCAACAGGAGTCTGCAGCCCCCGCCCTCGAAAAAGAAGCA
GCAGAGTTAGAAGAGGCTGCGAGGGAGGTCACGATCGAGGGAGGGAAGGA
GGGCGAGGCGGAAGTCGCTGAATATTTTGCGTGGAATAATCAGTTGGAGG
GAATCAAGAAGGAGATGAGAAAATACACTCAGGATCCCGATGTCGTCTTG
TCCTTTTTGAAGAAGGGAAGGTTGGTCTGTGTGAAGGAGGAGGGGAAGGA
AGGAGGGAGGGAGGGAGCGAAGGAGTGGGGGTGGGGAGCTGTAGTAGGGT
ATAAGGCCGTAGATGTGAGCAAGGCCAGGGCGGGCTTGCCGGGGGGGGGG
GGGCGGTGGTGGGTGCAGGGAAGGTAG
back to top
Synonyms
Publications