NO12G02730.1, NO12G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02730.1
Unique NameNO12G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1086
Alignment locationchr12:765590..766675 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:765590..766675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO12G02730.1 vs.
Match: EWM25756.1 (dna excision repair protein ercc-6 [Nannochloropsis gaditana])

HSP 1 Score: 137.1 bits (344), Expect = 4.700e-29
Identity = 78/131 (59.54%), Postives = 94/131 (71.76%), Query Frame = 0
Query:   16 SLPRFGPRGRIMDAGASGGGGGGGESGVMFGGQSNAPISSTDILSRFREREG-GSGRGGGGLVMAGAEARYMSLMDRIKKFLMEKGPRVPTERLLQYFRDVPHTDAVIFKAMLKTVGRLENGAWSLREEEE 146
            S+PRFGPR      G  GGG GGG             ++STDILSRFREREG G G  GG   + GA+ARY+SL++RIKKFL EKGPRVPTE +L++F+ VPH+DAVIFK MLK+VG+L  GAW+LREE E
Sbjct:  826 SMPRFGPR-----RGGLGGGAGGG-------------LASTDILSRFREREGRGEGSEGG---LGGADARYVSLLERIKKFLREKGPRVPTEEVLRHFKHVPHSDAVIFKTMLKSVGKLSRGAWTLREEAE 935          
The following BLAST results are available for this feature:
BLAST of NO12G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25756.14.700e-2959.54dna excision repair protein ercc-6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02730NO12G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02730.1NO12G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02730.1.cds1NO12G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02730.1 ID=NO12G02730.1|Name=NO12G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
ATGGCGGCAGCCACAGAAGCAGCAGCAGCGGCGGCGTTCGTGTCATCTTT
GCCGAGGTTTGGACCGCGGGGACGGATAATGGATGCGGGGGCAAGTGGCG
GTGGAGGGGGGGGGGGAGAATCAGGCGTCATGTTTGGAGGGCAGTCAAAT
GCACCTATTAGTTCGACGGATATTTTGTCGAGGTTTCGAGAGAGGGAGGG
AGGAAGTGGAAGAGGAGGAGGAGGGTTAGTGATGGCGGGAGCAGAGGCTC
GGTATATGTCTTTGATGGATCGGATTAAGAAGTTTTTGATGGAAAAGGGG
CCAAGGGTACCAACGGAGCGATTGCTGCAATACTTCCGGGATGTTCCACA
TACGGACGCGGTGATTTTTAAGGCAATGTTAAAGACTGTGGGGAGGTTGG
AGAATGGGGCATGGAGCTTGAGGGAGGAGGAGGAGGAGGGGGGGGGGGGG
GGAGGGGGAGGACGGCGGAGGTAGACGTCCGGAAGGGTTTGTATGTATGT
CTTATAGACAATTGGTTAAGAGGTGAGAGAAAGGGTAATTTAGATTGCTA
TGATGTAGCAAAGGCTTGTGAAGGTCGAGAAGAAAAGAAGTTAATGTGCA
CTCAAAAGTAGAATGCCAAGTTGGAGTCTGTTAATTTTAAGAGAATACAT
AGCAACGGCGAATGAGAAGACACTAAAGCGGTGCCCTTAGAGATGTGCAC
ATTCAATAATACAACTAAAATTTATTTTGCAAAACAAGAAGAAAAATAGA
AATAGAGGCTCATTCCAAAAGGACAAAGCAAGCCAAGCGGAGCAAGTTAG
CGAATACGCTGGGGGGGAGGATAGCATTAATCTTTATCGTGTAGCTCGTG
TTTAATTTGATCTCAATCCTCCTTTGCCAATGCCTCTCCCGTGTCCGATA
CTTCGACTCATAATGGTACTCGCTTGGTGTACACGTTGCGACTTTCTGTG
TACATTTTTCCGAATAGGAAAGCCATGTAAAGTCAACCGCGGAAAGCCAC
CAATAGACCTGGGAGGCGTTTTGCAATACAGCAAAGGAGCATAAGCAAAA
AAGATTAAAAAAACAACCAAAAACAAAGAGAAAGAA
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protein sequence of NO12G02730.1

>NO12G02730.1-protein ID=NO12G02730.1-protein|Name=NO12G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MAAATEAAAAAAFVSSLPRFGPRGRIMDAGASGGGGGGGESGVMFGGQSN
APISSTDILSRFREREGGSGRGGGGLVMAGAEARYMSLMDRIKKFLMEKG
PRVPTERLLQYFRDVPHTDAVIFKAMLKTVGRLENGAWSLREEEEEGGGG
GGGGRRR*
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mRNA from alignment at chr12:765590..766675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02730.1 ID=NO12G02730.1|Name=NO12G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp|location=Sequence derived from alignment at chr12:765590..766675- (Nannochloropsis oceanica)
ATGGCGGCAGCCACAGAAGCAGCAGCAGCGGCGGCGTTCGTGTCATCTTT GCCGAGGTTTGGACCGCGGGGACGGATAATGGATGCGGGGGCAAGTGGCG GTGGAGGGGGGGGGGGAGAATCAGGCGTCATGTTTGGAGGGCAGTCAAAT GCACCTATTAGTTCGACGGATATTTTGTCGAGGTTTCGAGAGAGGGAGGG AGGAAGTGGAAGAGGAGGAGGAGGGTTAGTGATGGCGGGAGCAGAGGCTC GGTATATGTCTTTGATGGATCGGATTAAGAAGTTTTTGATGGAAAAGGGG CCAAGGGTACCAACGGAGCGATTGCTGCAATACTTCCGGGATGTTCCACA TACGGACGCGGTGATTTTTAAGGCAATGTTAAAGACTGTGGGGAGGTTGG AGAATGGGGCATGGAGCTTGAGGGAGGAGGAGGAGGAGGGGGGGGGGGGG GGAGGGGGAGGACGGCGGAGGTAGACGTCCGGAAGGGTTTGTATGTATGT CTTATAGACAATTGGTTAAGAGGTGAGAGAAAGGGTAATTTAGATTGCTA TGATGTAGCAAAGGCTTGTGAAGGTCGAGAAGAAAAGAAGTTAATGTGCA CTCAAAAGTAGAATGCCAAGTTGGAGTCTGTTAATTTTAAGAGAATACAT AGCAACGGCGAATGAGAAGACACTAAAGCGGTGCCCTTAGAGATGTGCAC ATTCAATAATACAACTAAAATTTATTTTGCAAAACAAGAAGAAAAATAGA AATAGAGGCTCATTCCAAAAGGACAAAGCAAGCCAAGCGGAGCAAGTTAG CGAATACGCTGGGGGGGAGGATAGCATTAATCTTTATCGTGTAGCTCGTG TTTAATTTGATCTCAATCCTCCTTTGCCAATGCCTCTCCCGTGTCCGATA CTTCGACTCATAATGGTACTCGCTTGGTGTACACGTTGCGACTTTCTGTG TACATTTTTCCGAATAGGAAAGCCATGTAAAGTCAACCGCGGAAAGCCAC CAATAGACCTGGGAGGCGTTTTGCAATACAGCAAAGGAGCATAAGCAAAA AAGATTAAAAAAACAACCAAAAACAAAGAGAAAGAA
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Coding sequence (CDS) from alignment at chr12:765590..766675-

>NO12G02730.1 ID=NO12G02730.1|Name=NO12G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr12:765590..766675- (Nannochloropsis oceanica)
ATGGCGGCAGCCACAGAAGCAGCAGCAGCGGCGGCGTTCGTGTCATCTTT
GCCGAGGTTTGGACCGCGGGGACGGATAATGGATGCGGGGGCAAGTGGCG
GTGGAGGGGGGGGGGGAGAATCAGGCGTCATGTTTGGAGGGCAGTCAAAT
GCACCTATTAGTTCGACGGATATTTTGTCGAGGTTTCGAGAGAGGGAGGG
AGGAAGTGGAAGAGGAGGAGGAGGGTTAGTGATGGCGGGAGCAGAGGCTC
GGTATATGTCTTTGATGGATCGGATTAAGAAGTTTTTGATGGAAAAGGGG
CCAAGGGTACCAACGGAGCGATTGCTGCAATACTTCCGGGATGTTCCACA
TACGGACGCGGTGATTTTTAAGGCAATGTTAAAGACTGTGGGGAGGTTGG
AGAATGGGGCATGGAGCTTGAGGGAGGAGGAGGAGGAGGGGGGGGGGGGG
GGAGGGGGAGGACGGCGGAGGTAG
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Synonyms
Publications