NO12G02660.1, NO12G02660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G02660.1
Unique NameNO12G02660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1188
Alignment locationchr12:747682..748869 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:747682..748869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G02660.1 vs.
Match: EWM25771.1 (guanine nucleotide-binding protein subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 451.4 bits (1160), Expect = 2.800e-123
Identity = 234/395 (59.24%), Postives = 281/395 (71.14%), Query Frame = 0 
Query:    5 KPSPEPRILRGHEASVQAVSFL----GSSGSSNDGEPPLLVTGDADGHVKLWDLGACRPRISWMPQQYSAPSLCMAPPTLSSMKGVLSLHALEQGRQLLTQLRGGTISLWDMGEYGGQPRPVRSWATGSFHFCKVSVGGNVSATASATPQQHHQQRLLLAPTAESEQFQLWDMRDGTRPAHTFAPSEPENRGLCMCLRLVLPTTSVGEGDGAGGGAAAGEGFALAVYEDGSLCGWDLRRCCTSFTSSSCSSSSSRSGSTAAFSVKLTEKETPVALDIGPSGNRGILGAAGCELVLFDLELAQHRCTKNKSLSLKHPGVGAVVVRSDEKLFATGGWDHRVRIFRWQDGAPLAVLRGHSESVNSLAFSSDMSTLVSVGKDARVASWEGLYPPTIPPP 396
            KP PEP ILRGHEA VQA++FL    G++      +  LL +GDADGHVKLWD+GACRP +SW+P + +A  +  A P+ ++MKGVLSLHA  QGR LLTQ+RGGT+SLWD+G+ GG P+ +RSWATGSFHFCKVSVG        A P Q     LLLAPT ESEQFQLWDMR+G+RP  +F P  P+NRGLCMCL+L+L  T   E   AG       G ALAV+EDGSL GWDLR   T+       S    +G  AAFSVKL +KETP+ LD+ PS  RGILGAAG +LV F L+LA H C   + ++LKHPGVG V +R DE L+A GGWDHRVRIFRWQDGAPLAVLRGH  +VN+L FS  + TLVS GKDAR+A WE ++PP +PPP
Sbjct:    8 KPPPEPFILRGHEAGVQALAFLCENHGTTSERGSDDFSLLASGDADGHVKLWDMGACRPCMSWIPAR-AAAQVTSASPSPATMKGVLSLHAFNQGRSLLTQVRGGTVSLWDLGKCGGTPQSLRSWATGSFHFCKVSVG----EVGGADPTQ-----LLLAPTVESEQFQLWDMREGSRPVISFTPPGPQNRGLCMCLKLLLSGTRGAEDSNAG------VGHALAVFEDGSLHGWDLRMLATN----DRDSFKYGTGDVAAFSVKLAQKETPLCLDVAPSRRRGILGAAGADLVTFALDLALHHCQVKQCIALKHPGVGDVKIREDEGLWAVGGWDHRVRIFRWQDGAPLAVLRGHGATVNALTFSPGLKTLVSGGKDARIALWENVFPP-LPPP 381
The following BLAST results are available for this feature:
BLAST of NO12G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25771.12.800e-12359.24guanine nucleotide-binding protein subunit beta [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02660NO12G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G02660.1NO12G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G02660.1.cds1NO12G02660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G02660.1 ID=NO12G02660.1|Name=NO12G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
ATGCCCAAGCCCAAGCCTTCCCCTGAGCCCCGTATCCTTCGGGGCCACGA
GGCAAGCGTGCAAGCAGTCTCCTTCCTGGGCAGCAGCGGTAGCAGCAATG
ATGGGGAGCCTCCCCTCCTCGTGACGGGCGATGCCGACGGCCATGTAAAG
CTCTGGGACCTTGGCGCCTGTCGTCCGCGAATAAGCTGGATGCCGCAGCA
GTATTCTGCCCCCTCCTTGTGTATGGCGCCGCCGACCCTGTCATCGATGA
AGGGTGTCTTGAGCTTGCATGCGCTCGAACAAGGCCGGCAATTGTTGACG
CAGCTTCGCGGGGGAACCATTTCGTTGTGGGACATGGGCGAATATGGAGG
GCAGCCCCGACCAGTGCGTTCCTGGGCGACGGGTTCGTTTCATTTTTGTA
AGGTCTCGGTGGGTGGAAATGTCAGTGCTACAGCCAGTGCAACGCCACAG
CAGCATCACCAGCAGCGGTTATTGTTGGCGCCGACAGCCGAGTCGGAACA
ATTTCAATTGTGGGACATGCGGGATGGCACGCGTCCAGCGCATACATTTG
CGCCTTCAGAGCCTGAGAACAGGGGGCTGTGTATGTGTCTTCGCTTAGTG
TTGCCCACCACTTCTGTTGGGGAGGGAGATGGTGCTGGTGGTGGTGCTGC
CGCTGGAGAGGGGTTTGCGCTGGCGGTGTATGAAGATGGTTCTCTATGTG
GATGGGATCTTAGACGTTGTTGTACCTCTTTTACGTCTTCTTCCTGCAGT
AGCAGTAGTAGCCGCAGTGGCAGTACTGCTGCGTTCTCTGTCAAGCTTAC
TGAGAAAGAAACGCCCGTGGCTTTGGATATCGGGCCGTCGGGAAACCGAG
GAATCTTAGGAGCAGCAGGTTGTGAGCTCGTCCTTTTTGACCTGGAGCTG
GCACAACACCGGTGTACGAAAAATAAATCCCTCTCGCTGAAGCACCCAGG
TGTAGGGGCAGTAGTAGTGCGGAGTGATGAGAAGCTTTTCGCAACGGGAG
GTTGGGACCATCGGGTGCGTATTTTCCGGTGGCAAGATGGCGCACCTTTG
GCAGTATTGAGAGGACATAGCGAAAGTGTGAACTCCTTGGCCTTTAGTTC
GGATATGAGTACGCTGGTCTCGGTGGGGAAGGACGCAAGGGTGGCGTCGT
GGGAAGGCCTTTACCCGCCGACAATACCACCACCGTAG
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protein sequence of NO12G02660.1

>NO12G02660.1-protein ID=NO12G02660.1-protein|Name=NO12G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MPKPKPSPEPRILRGHEASVQAVSFLGSSGSSNDGEPPLLVTGDADGHVK
LWDLGACRPRISWMPQQYSAPSLCMAPPTLSSMKGVLSLHALEQGRQLLT
QLRGGTISLWDMGEYGGQPRPVRSWATGSFHFCKVSVGGNVSATASATPQ
QHHQQRLLLAPTAESEQFQLWDMRDGTRPAHTFAPSEPENRGLCMCLRLV
LPTTSVGEGDGAGGGAAAGEGFALAVYEDGSLCGWDLRRCCTSFTSSSCS
SSSSRSGSTAAFSVKLTEKETPVALDIGPSGNRGILGAAGCELVLFDLEL
AQHRCTKNKSLSLKHPGVGAVVVRSDEKLFATGGWDHRVRIFRWQDGAPL
AVLRGHSESVNSLAFSSDMSTLVSVGKDARVASWEGLYPPTIPPP*
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mRNA from alignment at chr12:747682..748869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G02660.1 ID=NO12G02660.1|Name=NO12G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at chr12:747682..748869- (Nannochloropsis oceanica)
ATGCCCAAGCCCAAGCCTTCCCCTGAGCCCCGTATCCTTCGGGGCCACGA
GGCAAGCGTGCAAGCAGTCTCCTTCCTGGGCAGCAGCGGTAGCAGCAATG
ATGGGGAGCCTCCCCTCCTCGTGACGGGCGATGCCGACGGCCATGTAAAG
CTCTGGGACCTTGGCGCCTGTCGTCCGCGAATAAGCTGGATGCCGCAGCA
GTATTCTGCCCCCTCCTTGTGTATGGCGCCGCCGACCCTGTCATCGATGA
AGGGTGTCTTGAGCTTGCATGCGCTCGAACAAGGCCGGCAATTGTTGACG
CAGCTTCGCGGGGGAACCATTTCGTTGTGGGACATGGGCGAATATGGAGG
GCAGCCCCGACCAGTGCGTTCCTGGGCGACGGGTTCGTTTCATTTTTGTA
AGGTCTCGGTGGGTGGAAATGTCAGTGCTACAGCCAGTGCAACGCCACAG
CAGCATCACCAGCAGCGGTTATTGTTGGCGCCGACAGCCGAGTCGGAACA
ATTTCAATTGTGGGACATGCGGGATGGCACGCGTCCAGCGCATACATTTG
CGCCTTCAGAGCCTGAGAACAGGGGGCTGTGTATGTGTCTTCGCTTAGTG
TTGCCCACCACTTCTGTTGGGGAGGGAGATGGTGCTGGTGGTGGTGCTGC
CGCTGGAGAGGGGTTTGCGCTGGCGGTGTATGAAGATGGTTCTCTATGTG
GATGGGATCTTAGACGTTGTTGTACCTCTTTTACGTCTTCTTCCTGCAGT
AGCAGTAGTAGCCGCAGTGGCAGTACTGCTGCGTTCTCTGTCAAGCTTAC
TGAGAAAGAAACGCCCGTGGCTTTGGATATCGGGCCGTCGGGAAACCGAG
GAATCTTAGGAGCAGCAGGTTGTGAGCTCGTCCTTTTTGACCTGGAGCTG
GCACAACACCGGTGTACGAAAAATAAATCCCTCTCGCTGAAGCACCCAGG
TGTAGGGGCAGTAGTAGTGCGGAGTGATGAGAAGCTTTTCGCAACGGGAG
GTTGGGACCATCGGGTGCGTATTTTCCGGTGGCAAGATGGCGCACCTTTG
GCAGTATTGAGAGGACATAGCGAAAGTGTGAACTCCTTGGCCTTTAGTTC
GGATATGAGTACGCTGGTCTCGGTGGGGAAGGACGCAAGGGTGGCGTCGT
GGGAAGGCCTTTACCCGCCGACAATACCACCACCGTAG
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Coding sequence (CDS) from alignment at chr12:747682..748869-

>NO12G02660.1 ID=NO12G02660.1|Name=NO12G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr12:747682..748869- (Nannochloropsis oceanica)
ATGCCCAAGCCCAAGCCTTCCCCTGAGCCCCGTATCCTTCGGGGCCACGA
GGCAAGCGTGCAAGCAGTCTCCTTCCTGGGCAGCAGCGGTAGCAGCAATG
ATGGGGAGCCTCCCCTCCTCGTGACGGGCGATGCCGACGGCCATGTAAAG
CTCTGGGACCTTGGCGCCTGTCGTCCGCGAATAAGCTGGATGCCGCAGCA
GTATTCTGCCCCCTCCTTGTGTATGGCGCCGCCGACCCTGTCATCGATGA
AGGGTGTCTTGAGCTTGCATGCGCTCGAACAAGGCCGGCAATTGTTGACG
CAGCTTCGCGGGGGAACCATTTCGTTGTGGGACATGGGCGAATATGGAGG
GCAGCCCCGACCAGTGCGTTCCTGGGCGACGGGTTCGTTTCATTTTTGTA
AGGTCTCGGTGGGTGGAAATGTCAGTGCTACAGCCAGTGCAACGCCACAG
CAGCATCACCAGCAGCGGTTATTGTTGGCGCCGACAGCCGAGTCGGAACA
ATTTCAATTGTGGGACATGCGGGATGGCACGCGTCCAGCGCATACATTTG
CGCCTTCAGAGCCTGAGAACAGGGGGCTGTGTATGTGTCTTCGCTTAGTG
TTGCCCACCACTTCTGTTGGGGAGGGAGATGGTGCTGGTGGTGGTGCTGC
CGCTGGAGAGGGGTTTGCGCTGGCGGTGTATGAAGATGGTTCTCTATGTG
GATGGGATCTTAGACGTTGTTGTACCTCTTTTACGTCTTCTTCCTGCAGT
AGCAGTAGTAGCCGCAGTGGCAGTACTGCTGCGTTCTCTGTCAAGCTTAC
TGAGAAAGAAACGCCCGTGGCTTTGGATATCGGGCCGTCGGGAAACCGAG
GAATCTTAGGAGCAGCAGGTTGTGAGCTCGTCCTTTTTGACCTGGAGCTG
GCACAACACCGGTGTACGAAAAATAAATCCCTCTCGCTGAAGCACCCAGG
TGTAGGGGCAGTAGTAGTGCGGAGTGATGAGAAGCTTTTCGCAACGGGAG
GTTGGGACCATCGGGTGCGTATTTTCCGGTGGCAAGATGGCGCACCTTTG
GCAGTATTGAGAGGACATAGCGAAAGTGTGAACTCCTTGGCCTTTAGTTC
GGATATGAGTACGCTGGTCTCGGTGGGGAAGGACGCAAGGGTGGCGTCGT
GGGAAGGCCTTTACCCGCCGACAATACCACCACCGTAG
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Synonyms
Publications