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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:276721..278446 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00840.1 vs.
Match: EWM25940.1 (uncharacterized protein Naga_100469g3 [Nannochloropsis gaditana]) HSP 1 Score: 280.0 bits (715), Expect = 6.900e-72 Identity = 160/233 (68.67%), Postives = 180/233 (77.25%), Query Frame = 0
Query: 14 MLARAVQVAVRCRGGAVAALRNGSIPAVVATAPIRCLASTPVTETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQL----KGKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVEDGSSKGGA-FNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAKAFAGVMFSGGKAGEVTGATVALGGVPATAIKSAMSLVAEAMK 242
ML RA Q A+R R A L N +A+ P R L+ TPVTETDEY IFPRE PGLDYKLNWSLNGDDVTP GNAYRNLDA+ L KG KA + G K+LEAGD+VPFETFD HLADVKA LEKA+DLYVEDG+ KGG+ FN+RVI DS +YALAAKALL+Q++ S WPF K+V VYAAGGAK F GVMF+GGK G VTGATVA+GG PATAIK+AMSLVAE MK
Sbjct: 1 MLVRAFQGALRRR----AVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGAD--KVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKV--SGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMK 225
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00840.1 ID=NO12G00840.1|Name=NO12G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp GAAAAGGACACTAATCGGGCGGATCTACCCTCGTACACGACCTCTACGTC TCTATGTGACTGCTATATGCATGTGGTTATAATGTTTGCGTCTGTCACTC CATTTCTAGCCTTGGGTTTGCGTTTGGTGAGCCGAAAACCGAGGGCCTGC TTTTCACGCTCCCCTCCCTCTCCCATTCCCAACATCATCATCGTCATAAT CGCACAAGGCACTGCTGAGAACACCCTGACATGTCATTATGCACACACAT GTACACAGAACCACAGCGCCATCCACGATGCTGGCCCGGGCAGTCCAAGT GGCCGTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTCGAAATGGGAGCA TCCCCGCCGTTGTCGCCACTGCTCCCATTCGATGCCTTGCCAGCACTCCA GTCACGGAAACGGACGAATACATCATCTTCCCTCGCGAGGCTCCCGGCCT GGACTACAAGCTAAACTGGTCGTTGAACGGCGACGATGTCACACCGGCCG GCAATGCCTACCGTAATTTAGACGCATCTCAATTGAAGGGGAAGAAGGCA GGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGCAGGGGATACGGT GCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTGAAGGCGACGTTGG AAAAAGCCACCGATTTGTATGTAGAAGATGGCTCCAGCAAAGGCGGTGCT TTTAACGTGCGTGTCATAGCCGACAGCCCCGCCTACGCCCTGGCTGCAAA GGCTTTGTTGGAACAAGCACAAACCAGAAGTAGCTCCTGGCCATTCACCA AGAGTGTGGTTGTGTATGCTGCGGGGGGCGCCAAGGCGTTTGCTGGCGTG ATGTTTTCGGGGGGGAAGGCAGGGGAGGTGACTGGTGCGACGGTGGCGTT GGGTGGCGTCCCGGCCACGGCAATCAAGAGTGCGATGAGCCTGGTGGCGG AAGCGATGAAGAAGTGAAGGCCATCACATCACAAAGAACAAGAGGGTGGC CATTTTATAGCAGATTGTTGAAATAGTGCAGTGATTGTGTGGCTCCGCTA GGGGGAAGGGAGGAGGGAGGGAAGGATAGAGGAAGGGAGGAGGGAGCTGC AGACTTGTGTATGACTGATGATTTACGTGCCCGGTGGCGGACGAAGGACA CGATAAAGAAAGAAAAGACGAAACTCACATGAGGTACTCGGCA back to topprotein sequence of NO12G00840.1 >NO12G00840.1-protein ID=NO12G00840.1-protein|Name=NO12G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp MHTHVHRTTAPSTMLARAVQVAVRCRGGAVAALRNGSIPAVVATAPIRCL ASTPVTETDEYIIFPREAPGLDYKLNWSLNGDDVTPAGNAYRNLDASQLK GKKAGKEGGKEVKLLEAGDTVPFETFDAHLADVKATLEKATDLYVEDGSS KGGAFNVRVIADSPAYALAAKALLEQAQTRSSSWPFTKSVVVYAAGGAKA FAGVMFSGGKAGEVTGATVALGGVPATAIKSAMSLVAEAMKK* back to topmRNA from alignment at chr12:276721..278446+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00840.1 ID=NO12G00840.1|Name=NO12G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp|location=Sequence derived from alignment at chr12:276721..278446+ (Nannochloropsis oceanica) GAAAAGGACACTAATCGGGCGGATCTACCCTCGTACACGACCTCTACGTC
TCTATGTGACTGCTATATGCATGTGGTTATAATGTTTGCGTCTGTCACTC
CATTTCTAGCCTTGGGTTTGCGTTTGGTGAGCCGAAAACCGAGGGCCTGC
TTTTCACGCTCCCCTCCCTCTCCCATTCCCAACATCATCATCGTCATAAT
CGCACAAGGCACTGCTGAGAACACCCTGACATGTCATTATGCACACACAT
GTACACAGAACCACAGCGCCATCCACGATGCTGGCCCGGGCAGTCCAAGT
GGCCGTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTCGAAATGGGAGCA
TCCCCGCCGTTGTCGCCACTGCTCCCATTCGATGCCTTGCCAGCACTCCA
GTCACGGTAAGCACGATAAACGCCCTGCTAAACCTCCCTATCGCCTATCT
TGTCGCCGTCCTCTGCCCCGTCTTTCTGTTATCGGGGGGTGTGAGACCAG
GGGCATGAATCGAACGCGTGACTGGTCGTTGGACAAGCCCGCTTAACCCT
CTCATCCCTCCCTCCTCCCCTCCTTCCTTCCCGCCGATTTCCCATCCTGC
TTTCCCCCCTTCCTAGGAAACGGACGAATACATCATCTTCCCTCGCGAGG
CTCCCGGCCTGGACTACAAGCTAAACTGGTCGTTGAACGGCGACGATGTC
ACACCGGCCGGCAATGCCTACCGTAATTTAGACGCATCTCAATTGAAGGG
GAAGAAGGCAGGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGCAG
GGGATACGGTGCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTGAAG
GCGACGTTGGTAAGGAAAAATATTGGAAATTTAGGGAGAGAGAGGGAGAG
AGGGGAAGGAGGATGGGAAGAAAGCAAGCTGAGTGTGATTGCAACATGCA
CGCATAATACCTTAACCCTCTCCTTTCCTCCTGCCTTCCTCCCTTCCTTC
CTCCCTCCTTTGCTTGCAGGAAAAAGCCACCGATTTGTATGTAGAAGATG
GCTCCAGCAAAGGCGGTGCTTTTAACGTGCGTGTCATAGCCGACAGCCCC
GCCTACGCCCTGGCTGCAAAGGCTTTGTTGGAACAAGCACAAACCAGAAG
TAGCTCCTGGCCATTCACCAAGAGTGTGGTTGTGTATGCTGCGGGGGGCG
CCAAGGCGTTTGCTGGCGTGATGTTTTCGGGGGGGAAGGCAGGGGAGGTG
ACTGGTAAGGGGGGAGATCGGCGAGGGAGGGAGGGAGGAAGGGAGGGGGT
GTTAATGCAGATGTGGGAGAGGAATTCAGCGATTAGCCCAGCGTTTGCGC
AACAATTTATGTGTTGAAAATACAGAATTTCTCAACGCATCCACCCTCTC
TTCACAACTTGCGACAGGTGCGACGGTGGCGTTGGGTGGCGTCCCGGCCA
CGGCAATCAAGAGTGCGATGAGCCTGGTGGCGGAAGCGATGAAGAAGTGA
AGGCCATCACATCACAAAGAACAAGAGGGTGGCCATTTTATAGCAGATTG
TTGAAATAGTGCAGTGATTGTGTGGCTCCGCTAGGGGGAAGGGAGGAGGG
AGGGAAGGATAGAGGAAGGGAGGAGGGAGCTGCAGACTTGTGTATGACTG
ATGATTTACGTGCCCGGTGGCGGACGAAGGACACGATAAAGAAAGAAAAG
ACGAAACTCACATGAGGTACTCGGCA back to topCoding sequence (CDS) from alignment at chr12:276721..278446+ >NO12G00840.1 ID=NO12G00840.1|Name=NO12G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=729bp|location=Sequence derived from alignment at chr12:276721..278446+ (Nannochloropsis oceanica) ATGCACACACATGTACACAGAACCACAGCGCCATCCACGATGCTGGCCCG GGCAGTCCAAGTGGCCGTGAGGTGCCGGGGGGGCGCCGTGGCAGCCCTTC GAAATGGGAGCATCCCCGCCGTTGTCGCCACTGCTCCCATTCGATGCCTT GCCAGCACTCCAGTCACGGAAACGGACGAATACATCATCTTCCCTCGCGA GGCTCCCGGCCTGGACTACAAGCTAAACTGGTCGTTGAACGGCGACGATG TCACACCGGCCGGCAATGCCTACCGTAATTTAGACGCATCTCAATTGAAG GGGAAGAAGGCAGGAAAGGAGGGAGGGAAGGAGGTCAAGCTGCTCGAGGC AGGGGATACGGTGCCTTTCGAGACGTTTGATGCACATTTGGCGGATGTGA AGGCGACGTTGGAAAAAGCCACCGATTTGTATGTAGAAGATGGCTCCAGC AAAGGCGGTGCTTTTAACGTGCGTGTCATAGCCGACAGCCCCGCCTACGC CCTGGCTGCAAAGGCTTTGTTGGAACAAGCACAAACCAGAAGTAGCTCCT GGCCATTCACCAAGAGTGTGGTTGTGTATGCTGCGGGGGGCGCCAAGGCG TTTGCTGGCGTGATGTTTTCGGGGGGGAAGGCAGGGGAGGTGACTGGTGC GACGGTGGCGTTGGGTGGCGTCCCGGCCACGGCAATCAAGAGTGCGATGA GCCTGGTGGCGGAAGCGATGAAGAAGTGA back to top
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