NO12G00650.1, NO12G00650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00650.1
Unique NameNO12G00650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1356
Alignment locationchr12:229470..231440 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:229470..231440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00650.1 vs.
Match: WP_040911089.1 (GTP-binding protein [Leptospira broomii])

HSP 1 Score: 154.8 bits (390), Expect = 6.200e-34
Identity = 109/293 (37.20%), Postives = 142/293 (48.46%), Query Frame = 0 
Query:  159 EEDFRTVSDVLCGQVECANVLVLNRWDLLPSLPPPPSLPPSLHSLEALESILSHLNPSALLVRMSLPPSLPPSLLHLHPAWVGEGDGGPSPHFDIYEGESGAGWLQLLNQDRKEGAKEGGKEEEEEEGKDPLVWQHVYRARRPFHPQRLWDYLTSQGNDMERYVLRSKGFFWLATRGKEMGIWSQVGSSFSPRGGGRWWCETAQSEWPEDEEGKEDVRVDFWEEEEEGEGGRVGDKRQEVALIGVKVGGRDDVKTRVVGALDACLMTEEEWREGGREGGWEAVGGMDDPFPEW 452
            E+D R + D+L  QVE ANVL++N+ DL+           S   L  L SIL  LNP AL+V +      P  +L+             +  FD  +     GWL+ L  +     +E G            V   VYRAR+PFHP R WD L  +       V+RSKGFFWLATR   +G WSQ G +      G WW  TA+SEWPE E  KE +    W+E         GD+RQE+ LIGV +   +     +   LD CL+TEEE+  G    GWE+     DPFP+W
Sbjct:  163 EDDSRAIVDLLIEQVEFANVLLINKIDLV-----------SQKELIGLTSILKRLNPDALIVPIQEGEVDPKLILN-------------TGRFDFLKAAEAPGWLKELRGEHLPETEEFG------------VSSFVYRARKPFHPHRFWDILQEEWPG----VIRSKGFFWLATRPDWVGGWSQAGGACRTENAGLWWAATARSEWPEAESEKEILAQ--WQEP-------YGDRRQEIVLIGVDMDHEE-----IASLLDGCLVTEEEFSYG--PSGWES---FSDPFPDW 396
The following BLAST results are available for this feature:
BLAST of NO12G00650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_040911089.16.200e-3437.20GTP-binding protein [Leptospira broomii][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00650NO12G00650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00650.1NO12G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00650.1.cds1NO12G00650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00650.1.cds2NO12G00650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00650.1.cds3NO12G00650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00650.1.cds4NO12G00650.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00650.1 ID=NO12G00650.1|Name=NO12G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
ATGGGTGTGGAGGAGGAGGAGGTGGAAGGGGGGGGGGAGGAGGAGGAGAA
AAAAAGAGAGGAAAGGAAGTTGGATATGGTGTATGTGGAGGCGGGAGGGT
GGATGGAGCCTTACAGACTAGCGGAGGTGCTAGTGGGCCACGACCATCAA
CACGAGGGCGAGGACGAGGACGGGGGGAGGAAGGGGGAAAGGGAGGGCAC
GACCACCACAATCATGCGATATTGGCAGGGGGCGGCGCCGTTGGAGGAGG
AGGAGGAAGAGGAGGAAAAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGT
GCGATCATTCAACATGCACGGATCCCACGCACAACCATGGAGGTGGCATC
GAGAATGGGGAGGAAGAGAAGGAGGAGGAGGACTTCCGCACGGTTTCCGA
CGTACTATGCGGACAAGTGGAATGTGCCAACGTCCTGGTCCTCAATCGGT
GGGACCTCCTTCCCTCCCTCCCTCCCCCCCCCTCCCTCCCTCCCTCCCTC
CATTCCCTCGAAGCCCTGGAGTCGATCCTTAGTCACTTGAACCCCTCCGC
CCTCTTGGTTCGTATGTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCTCC
ACCTCCATCCGGCGTGGGTTGGGGAGGGGGATGGTGGGCCCTCACCTCAT
TTTGACATCTATGAGGGTGAGAGCGGGGCAGGATGGCTGCAGCTCTTGAA
CCAGGATAGGAAGGAGGGCGCGAAGGAGGGAGGGAAGGAGGAGGAGGAGG
AGGAGGGGAAAGACCCCCTTGTCTGGCAACACGTGTACCGAGCCCGTCGC
CCTTTCCACCCGCAGCGTCTGTGGGACTACTTGACTTCCCAAGGAAACGA
CATGGAGAGGTACGTCCTGCGCAGCAAAGGCTTCTTTTGGCTGGCCACGC
GCGGGAAGGAAATGGGAATATGGTCCCAAGTCGGGTCCTCGTTCTCGCCC
AGGGGGGGAGGGAGGTGGTGGTGTGAAACGGCTCAGTCGGAGTGGCCAGA
GGACGAGGAAGGGAAGGAGGACGTGAGGGTGGACTTCTGGGAAGAGGAGG
AAGAGGGGGAGGGAGGGAGGGTGGGGGATAAGAGGCAGGAGGTGGCGTTG
ATCGGGGTAAAGGTAGGAGGGAGGGATGATGTGAAGACGAGAGTGGTGGG
GGCATTGGATGCGTGCCTGATGACCGAGGAGGAATGGAGGGAGGGAGGGA
GGGAGGGAGGATGGGAGGCAGTGGGGGGGATGGACGACCCTTTCCCGGAG
TGGTGA
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protein sequence of NO12G00650.1

>NO12G00650.1-protein ID=NO12G00650.1-protein|Name=NO12G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp
MGVEEEEVEGGGEEEEKKREERKLDMVYVEAGGWMEPYRLAEVLVGHDHQ
HEGEDEDGGRKGEREGTTTTIMRYWQGAAPLEEEEEEEEKEEKEEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGCDHSTCTDPTHNHGGGI
ENGEEEKEEEDFRTVSDVLCGQVECANVLVLNRWDLLPSLPPPPSLPPSL
HSLEALESILSHLNPSALLVRMSLPPSLPPSLLHLHPAWVGEGDGGPSPH
FDIYEGESGAGWLQLLNQDRKEGAKEGGKEEEEEEGKDPLVWQHVYRARR
PFHPQRLWDYLTSQGNDMERYVLRSKGFFWLATRGKEMGIWSQVGSSFSP
RGGGRWWCETAQSEWPEDEEGKEDVRVDFWEEEEEGEGGRVGDKRQEVAL
IGVKVGGRDDVKTRVVGALDACLMTEEEWREGGREGGWEAVGGMDDPFPE
W*
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mRNA from alignment at chr12:229470..231440+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00650.1 ID=NO12G00650.1|Name=NO12G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1971bp|location=Sequence derived from alignment at chr12:229470..231440+ (Nannochloropsis oceanica)
ATGGGTGTGGAGGAGGAGGAGGTGGAAGGGGGGGGGGAGGAGGAGGAGAA
AAAAAGAGAGGAAAGGAAGTTGGATATGGTGTATGTGGAGGCGGGAGGGT
GGATGGAGCCTTACAGACTAGCGGAGGTGCTAGTGGGCCACGACCATCAA
CACGAGGGCGAGGACGAGGACGGGGGGAGGAAGGGGGAAAGGGAGGGCAC
GACCACCACAATCATGCGATATGTACGGATACGACACACAATTATGGGGG
AGGAGATGGAAGTGAAGGGCATGACCCTCTGACGTGCACAGATCCTACCC
ACGACCGCACTTGTGGTGGTGATGGGGAGGGAGGGAGGAAGGGGAGGAAG
GAGGGTGGGTTCCATGTGGCCTTGTTGGTGAGTGTATTGGATGCGCCTAC
CTTTTTGGAACAGTGGCAGGGGGCGGCGCCGTTGGAGGAGGAGGAGGAAG
AGGAGGAAAAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGTGCGATCATT
CAACATGCACGGATCCCACGCACAACCATGGAGGTGGCATCGAGAATGGG
GAGGAAGAGAAGGAGGAGGAGGACTTCCGCACGGTTTCCGACGTACTATG
CGGACAAGTGGAATGTGCCAACGTCCTGGTCCTCAATCGGTGGGACCTCC
TTCCCTCCCTCCCTCCCCCCCCCTCCCTCCCTCCCTCCCTCCATTCCCTC
GAAGCCCTGGAGTCGATCCTTAGTCACTTGAACCCCTCCGCCCTCTTGGT
TCGTATGTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCTCCACCTCCATC
CGGCGTGGGTTGGGGAGGGGGATGGTGGGCCCTCACCTCATTTTGACATC
TATGAGGGTGAGAGCGGGGCAGGATGGCTGCAGCTCTTGAACCAGGATAG
GAAGGTACGCTCTCTTCCTCCCTCCCTCCCTCCCCCCTCCCTCTCTTCCT
TCATCTTTCACCCTTTTCCCTCTTGTTGATACCCGGAAGACGACGAGTGG
CGCGGGCTAGGCGGGCTGCAGCTCTTGACCCCACGGGAAGAAGGGAGGGA
GGGAGGGAGGGAGGAGAGGACTGACGTTGTGCCTTTAAGTTTACTCTTTA
TATTCACATCCTCATTCTCTCCCTCCCCTCCCCTAATTGCCTCTCGGCCG
ACCTCGACAACCCGACCCACAAACACAAGGAGGGCGCGAAGGAGGGAGGG
AAGGAGGAGGAGGAGGAGGAGGGGAAAGACCCCCTTGTCTGGCAACACGT
GTACCGAGCCCGTCGCCCTTTCCACCCGCAGCGTCTGTGGGACTACTTGA
CTTCCCAAGGAAACGACATGGAGAGGTATGGCCTTGCCCTCCCTCCCTCC
CTTCCTCCGCCCCTTCCTCCCTCCCTTCCTTCTTCTCCTCCCCGTTTCCT
TGGCCCCTCCTCCCCTCCTTCCTGCCTCCCCCCCTTCCTGCCCTCCACCC
TATCCCCCTCCCTCCCTTCCATAGGTACGTCCTGCGCAGCAAAGGCTTCT
TTTGGCTGGCCACGCGCGGGAAGGAAATGGGAATATGGTCCCAAGTCGGG
TCCTCGTTCTCGCCCAGGGGGGGAGGGAGGTGGTGGTGTGAAACGGCTCA
GTCGGAGTGGCCAGAGGACGAGGAAGGGAAGGAGGACGTGAGGGTGGACT
TCTGGGAAGAGGAGGAAGAGGGGGAGGGAGGGAGGGTGGGGGATAAGAGG
CAGGAGGTGGCGTTGATCGGGGTAAAGGTAGGAGGGAGGGATGATGTGAA
GACGAGAGTGGTGGGGGCATTGGATGCGTGCCTGATGACCGAGGAGGAAT
GGAGGGAGGGAGGGAGGGAGGGAGGATGGGAGGCAGTGGGGGGGATGGAC
GACCCTTTCCCGGAGTGGTGA
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Coding sequence (CDS) from alignment at chr12:229470..231440+

>NO12G00650.1 ID=NO12G00650.1|Name=NO12G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr12:229470..231440+ (Nannochloropsis oceanica)
ATGGGTGTGGAGGAGGAGGAGGTGGAAGGGGGGGGGGAGGAGGAGGAGAA
AAAAAGAGAGGAAAGGAAGTTGGATATGGTGTATGTGGAGGCGGGAGGGT
GGATGGAGCCTTACAGACTAGCGGAGGTGCTAGTGGGCCACGACCATCAA
CACGAGGGCGAGGACGAGGACGGGGGGAGGAAGGGGGAAAGGGAGGGCAC
GACCACCACAATCATGCGATATTGGCAGGGGGCGGCGCCGTTGGAGGAGG
AGGAGGAAGAGGAGGAAAAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGT
GCGATCATTCAACATGCACGGATCCCACGCACAACCATGGAGGTGGCATC
GAGAATGGGGAGGAAGAGAAGGAGGAGGAGGACTTCCGCACGGTTTCCGA
CGTACTATGCGGACAAGTGGAATGTGCCAACGTCCTGGTCCTCAATCGGT
GGGACCTCCTTCCCTCCCTCCCTCCCCCCCCCTCCCTCCCTCCCTCCCTC
CATTCCCTCGAAGCCCTGGAGTCGATCCTTAGTCACTTGAACCCCTCCGC
CCTCTTGGTTCGTATGTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCTCC
ACCTCCATCCGGCGTGGGTTGGGGAGGGGGATGGTGGGCCCTCACCTCAT
TTTGACATCTATGAGGGTGAGAGCGGGGCAGGATGGCTGCAGCTCTTGAA
CCAGGATAGGAAGGAGGGCGCGAAGGAGGGAGGGAAGGAGGAGGAGGAGG
AGGAGGGGAAAGACCCCCTTGTCTGGCAACACGTGTACCGAGCCCGTCGC
CCTTTCCACCCGCAGCGTCTGTGGGACTACTTGACTTCCCAAGGAAACGA
CATGGAGAGGTACGTCCTGCGCAGCAAAGGCTTCTTTTGGCTGGCCACGC
GCGGGAAGGAAATGGGAATATGGTCCCAAGTCGGGTCCTCGTTCTCGCCC
AGGGGGGGAGGGAGGTGGTGGTGTGAAACGGCTCAGTCGGAGTGGCCAGA
GGACGAGGAAGGGAAGGAGGACGTGAGGGTGGACTTCTGGGAAGAGGAGG
AAGAGGGGGAGGGAGGGAGGGTGGGGGATAAGAGGCAGGAGGTGGCGTTG
ATCGGGGTAAAGGTAGGAGGGAGGGATGATGTGAAGACGAGAGTGGTGGG
GGCATTGGATGCGTGCCTGATGACCGAGGAGGAATGGAGGGAGGGAGGGA
GGGAGGGAGGATGGGAGGCAGTGGGGGGGATGGACGACCCTTTCCCGGAG
TGGTGA
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Synonyms
Publications