NO12G00140.3, NO12G00140.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G00140.3
Unique NameNO12G00140.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length767
Alignment locationchr12:39088..40551 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:39088..40551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G00140.3 vs.
Match: EWM26010.1 (Autophagy-related protein 1010 family protein [Nannochloropsis gaditana])

HSP 1 Score: 276.6 bits (706), Expect = 6.700e-71
Identity = 140/192 (72.92%), Postives = 164/192 (85.42%), Query Frame = 0 
Query:    1 MNHKEHTLGELELRPLHAKEALQCMLHSILFLRAPNVVRPREVHCKHLRLSYAKLERPSSSSSSSSSSGGSSLARVDEVVDSAIDACLRNLTPAGPKLNKGRLILTFYERRRTQSFFRLIQNEERVVFEEWVIPFLIDNIGTTSPISSSLSHSDEGFVGVDAGDFFSPPRPPSSSSTLTPASSCDGREEDAA 193
            MNHKEH LGELELRPLH KEALQC+LHSI+FLRAPN+VRPREVHC+HLRLSY K+ERP+SSSSSSS     S+AR+DEVVDSA+DACLRNLTPAGP L++G L+LTFYERR+T SFFRLIQNEERVVFEEW+IPFL+D++G+TS ++SSLS SD+GFVGV  G+ ++ P   SS STL PAS   G  ED A
Sbjct:    1 MNHKEHVLGELELRPLHTKEALQCLLHSIIFLRAPNIVRPREVHCRHLRLSYPKVERPTSSSSSSSPF---SVARIDEVVDSALDACLRNLTPAGPNLSRGHLVLTFYERRQTLSFFRLIQNEERVVFEEWIIPFLVDSMGSTSTLASSLSASDDGFVGVHDGELYTEPSSHSSMSTLPPASLYGGGGEDPA 189
The following BLAST results are available for this feature:
BLAST of NO12G00140.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26010.16.700e-7172.92Autophagy-related protein 1010 family protein [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G00140NO12G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G00140.3NO12G00140.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G00140.3.cds1NO12G00140.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00140.3.cds2NO12G00140.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00140.3.cds3NO12G00140.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G00140.3.cds4NO12G00140.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G00140.3 ID=NO12G00140.3|Name=NO12G00140.3|organism=Nannochloropsis oceanica|type=mRNA|length=767bp
ACAAGCAGAGACAGGTACGCCAGCCTTGAAGTTCTAGTGGATAGGGGTAC
CTGCGAGCGGTGCAAAGAAAATCGTCCTCTCCCTCCATCCATCCCGCGCC
ATGAACCACAAGGAGCATACCCTGGGAGAACTGGAACTCCGCCCGCTCCA
CGCCAAGGAAGCCCTGCAATGCATGCTCCACTCCATCCTCTTCCTACGCG
CGCCTAATGTGGTGCGACCCCGTGAGGTACACTGCAAGCACCTCCGACTC
TCCTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCCTCCTCTTC
CTCGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGACAGCGCCA
TTGACGCGTGTCTCCGAAATCTTACGCCGGCAGGACCCAAATTGAATAAA
GGGCGCCTTATTCTTACCTTCTACGAGCGACGGCGGACACAGTCGTTCTT
CCGGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAGGAGTGGGTCATTC
CCTTCCTCATCGACAACATCGGCACCACCAGCCCCATCTCTTCCTCCCTC
TCTCACTCTGACGAAGGTTTTGTGGGCGTGGACGCCGGCGACTTTTTCTC
CCCTCCCCGCCCGCCCTCCTCCTCTTCCACCCTCACCCCGGCCTCTTCAT
GCGACGGGAGAGAAGAGGATGCTGCGAGAGGTGCATTTCTTTCTAGCCCT
CCCTCCCTCCCACCCTCTTTTTCTCCGCTGGCAAAGTAATGATACGCTCA
ACCCTCCCTCCGTCCCC
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protein sequence of NO12G00140.3

>NO12G00140.3-protein ID=NO12G00140.3-protein|Name=NO12G00140.3|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MNHKEHTLGELELRPLHAKEALQCMLHSILFLRAPNVVRPREVHCKHLRL
SYAKLERPSSSSSSSSSSGGSSLARVDEVVDSAIDACLRNLTPAGPKLNK
GRLILTFYERRRTQSFFRLIQNEERVVFEEWVIPFLIDNIGTTSPISSSL
SHSDEGFVGVDAGDFFSPPRPPSSSSTLTPASSCDGREEDAARGAFLSSP
PSLPPSFSPLAK*
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mRNA from alignment at chr12:39088..40551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G00140.3 ID=NO12G00140.3|Name=NO12G00140.3|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp|location=Sequence derived from alignment at chr12:39088..40551- (Nannochloropsis oceanica)
ACAAGCAGAGACAGGTACGCCAGCCTTGAAGTTCTAGTGGATAGGGGTAC
CTGCGAGCGGTGCAAAGAAAATCGTCCTCTCCCTCCATCCATCCCGCGCC
ATGAACCACAAGGAGCATACCCTGGGAGAACTGGAACTCCGCCCGCTCCA
CGCCAAGGAAGCCCTGCAATGCATGCTCCACTCCATCCTCTTCCTACGCG
CGCCTAATGTGGTGCGACCCCGTGAGGTATGTTTGAGGGTGCTTATAAAG
GGAGAGAAAGGGGAGAGGCATGAGAGCAAGCGAGAGGAGAGGGAGGGACG
TCTCTTAGTGCATCCTGTAGGCCAAGGTGGCATGATACTACTCACAATCG
TGCATTTAATTAATGAAAGCTAGCGTAACTTATGTTGAACGGGCTGTCAG
TGCAGAAGTAGGCAGGCCTGAAAGGGGGGCAGGAATTGAGTCAACGGGCG
CGAGAGGCAAAGCACATATGTTGGACAAACGCCTAGAGTGTCACCCACCC
AATCACCGTCGGACGATTAAATAGGTACACTGCAAGCACCTCCGACTCTC
CTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCCTCCTCTTCCT
CGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGACAGCGCCATT
GACGCGTGTCTCCGAAATCTTACGCCGGCAGGACCCAAATTGAATAAAGG
TAAGTACTAACAACAGCAACAGCTGCAGTAGTATTTGCTTTGATGATGTG
GAAGAGTAGGCATGCGTAGGGAGAGGGCGTGCGAAGTGATCCGAGATAAC
CTTACATTCTCCTCCTTTCTCAATTCAATTTATCGATGCCCCCTCCCTCT
ATCCCTCCCTCCCTCCCTCTTTCCCTCTTTTCCTTCCTCACTCCACCGCC
ACATGAAAGGGCGCCTTATTCTTACCTTCTACGAGCGACGGCGGACACAG
TCGTTCTTCCGGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAGGAGTG
GGTCATTCCCTTCCTCATCGACAACATCGGTATGTATCCCTATATCTCTC
CCTCTCCCTCACCCTCTCCCCAAACCTTGCCTGCTTTTCTTCACTCCCCG
CCCTGAGACTTTTCTTACTCATGGGCTGAGCGATAAAGGACTCGGCTAAT
CCGCATTTTAGCCTCTCATACGCCTTCGCTTCAACCCCTCCTCTATTCCC
TCCCTTTATCCCACCCAGGCACCACCAGCCCCATCTCTTCCTCCCTCTCT
CACTCTGACGAAGGTTTTGTGGGCGTGGACGCCGGCGACTTTTTCTCCCC
TCCCCGCCCGCCCTCCTCCTCTTCCACCCTCACCCCGGCCTCTTCATGCG
ACGGGAGAGAAGAGGATGCTGCGAGAGGTGCATTTCTTTCTAGCCCTCCC
TCCCTCCCACCCTCTTTTTCTCCGCTGGCAAAGTAATGATACGCTCAACC
CTCCCTCCGTCCCC
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Coding sequence (CDS) from alignment at chr12:39088..40551-

>NO12G00140.3 ID=NO12G00140.3|Name=NO12G00140.3|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr12:39088..40551- (Nannochloropsis oceanica)
ATGAACCACAAGGAGCATACCCTGGGAGAACTGGAACTCCGCCCGCTCCA
CGCCAAGGAAGCCCTGCAATGCATGCTCCACTCCATCCTCTTCCTACGCG
CGCCTAATGTGGTGCGACCCCGTGAGGTACACTGCAAGCACCTCCGACTC
TCCTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCCTCCTCTTC
CTCGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGACAGCGCCA
TTGACGCGTGTCTCCGAAATCTTACGCCGGCAGGACCCAAATTGAATAAA
GGGCGCCTTATTCTTACCTTCTACGAGCGACGGCGGACACAGTCGTTCTT
CCGGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAGGAGTGGGTCATTC
CCTTCCTCATCGACAACATCGGCACCACCAGCCCCATCTCTTCCTCCCTC
TCTCACTCTGACGAAGGTTTTGTGGGCGTGGACGCCGGCGACTTTTTCTC
CCCTCCCCGCCCGCCCTCCTCCTCTTCCACCCTCACCCCGGCCTCTTCAT
GCGACGGGAGAGAAGAGGATGCTGCGAGAGGTGCATTTCTTTCTAGCCCT
CCCTCCCTCCCACCCTCTTTTTCTCCGCTGGCAAAGTAA
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Synonyms
Publications