NO11G02410.1, NO11G02410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02410.1
Unique NameNO11G02410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1146
Alignment locationchr11:765573..767024 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:765573..767024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02410.1 vs.
Match: EWM24969.1 (Proteasome, beta-type subunit, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 500.4 bits (1287), Expect = 3.800e-138
Identity = 244/263 (92.78%), Postives = 250/263 (95.06%), Query Frame = 0 
Query:   22 MTTHMKAQQPAAAPSIWSTEGAARLGQGVTMATSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPLLDNIVGFKNRQDSKPEYTAEQVVAICKDAFLTAGERDIYTGDAVMISVITSKGVTTETFHLKKD 285
            MTTHMKAQQ    PSIWSTEGAARLG G T+ TSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIP++DNIVGFKNRQD KPEYTA  +VAICKDAFLTAGERDIYTGDAV ISVIT+ GVTTETF LK+D
Sbjct:    1 MTTHMKAQQSVPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
The following BLAST results are available for this feature:
BLAST of NO11G02410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24969.13.800e-13892.78Proteasome, beta-type subunit, conserved site [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02410NO11G02410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02410.1NO11G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02410.1.cds1NO11G02410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02410.1.cds2NO11G02410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02410.1.cds3NO11G02410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02410.1.cds4NO11G02410.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02410.1 ID=NO11G02410.1|Name=NO11G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
AAGTGAGTGAAGCATGGTGCCGAAGCTGCCGAGTTCCATGCGCTTCGAGG
CGCATTGCCACTGTCCCGTGTGCTCACCAACGTCCATGATGGCAAGCCCG
AATCGCACCAGCATCTAAAGATGCTCTGTTGCTGCCCGGTACTCATTTTC
CCCGTCTTTCGATCACTCCCGAATGCGCACCATCATCTCAGGCAAGAAGC
AGACGACGACCGCCTTCTTCACGCCCAGGCACAAAATGACAACACACATG
AAGGCGCAACAGCCGGCGGCGGCTCCCTCCATCTGGTCGACGGAGGGTGC
GGCCCGCTTGGGCCAGGGCGTGACTATGGCGACTAGTCACGATGACGGCA
GCATCGACCACGGCGTGACCCAGGCGCCTTATGAGCGCCGCTTCTCTCCG
TATGATTTCAATGGCGGCACGTGTCTGGCCATTGCCGGCAAGGATTTTGC
TGTGGTGGCAGGAGACACACGTTTGAGCACGGGTTACGAGATTCTGTCGC
GCAATGTCCCCAAGCTTTGCAAACTTACAAGCAAGACCGTGCTTGCCTCG
GCGGGTTGTTTGACGGACGTCCGCACCCTGCAGCAAGTCTTGGACATGCG
GCTGCGCATGTACGAACACGACAATGGCAAGGAAATCAGCACCCCCGCCG
TCGCCCAGTTGCTGGGAAACACTCTGTATTACCGTCGTTTCTTCCCTTAT
TATGCTTTTAATGTCCTGGCGGGTGTGGATGATGAAGGGAAGGGCTGTGT
CTTCTCTTACGATGCGGTCGGGTCGCATGAACGGGTGGAGTATTCAGCCA
GTGGATCAGGGCAAGCTTTTGTCATTCCCCTCCTCGACAATATCGTGGGC
TTCAAAAACCGACAAGACTCCAAGCCGGAGTACACCGCTGAGCAGGTTGT
GGCGATTTGCAAGGACGCTTTCCTGACCGCGGGCGAGCGTGACATTTATA
CGGGAGATGCGGTGATGATCAGCGTCATTACCTCGAAGGGGGTGACGACA
GAGACCTTCCACTTAAAGAAGGATTAAGGGATGGGATTGGTAGGAGAGGG
GATGGGGGGGAGGCAGACAATGTGATATGTGTGAAGTCGGGGGTCGAAAC
GACAGATGAAGGGAAAGAGGACAAAGAAAGAAAGAGAACACAAAAT
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protein sequence of NO11G02410.1

>NO11G02410.1-protein ID=NO11G02410.1-protein|Name=NO11G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MRTIISGKKQTTTAFFTPRHKMTTHMKAQQPAAAPSIWSTEGAARLGQGV
TMATSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTR
LSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHD
NGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVG
SHERVEYSASGSGQAFVIPLLDNIVGFKNRQDSKPEYTAEQVVAICKDAF
LTAGERDIYTGDAVMISVITSKGVTTETFHLKKD*
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mRNA from alignment at chr11:765573..767024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02410.1 ID=NO11G02410.1|Name=NO11G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp|location=Sequence derived from alignment at chr11:765573..767024- (Nannochloropsis oceanica)
AAGTGAGTGAAGCATGGTGCCGAAGCTGCCGAGTTCCATGCGCTTCGAGG
CGCATTGCCACTGTCCCGTGTGCTCACCAACGTCCATGATGGCAAGCCCG
AATCGCACCAGCATCTAAAGATGCTCTGTTGCTGCCCGGTACTCATTTTC
CCCGTCTTTCGATCACTCCCGAATGCGCACCATCATCTCAGGCAAGAAGC
AGACGACGACCGCCTTCTTCACGCCCAGGCACAAAATGACAACACACATG
AAGTAAGTAATACTTACTCCCTATGGTCATCCTCTAGCACTCGCATACTC
AAGCTTAATAACATGCCTTTTGTTGAACCGTAGGGCGCAACAGCCGGCGG
CGGCTCCCTCCATCTGGTCGACGGAGGGTGCGGCCCGCTTGGGCCAGGGC
GTGACTATGGCGACTAGTCACGATGACGGCAGCATCGACCACGGCGTGAC
CCAGGCGCCTTATGAGCGCCGCTTCTCTCCGTATGATTTCAATGGCGGGT
ATGTGGTTGCCTAGGGTATGGACAAGGGAACGGGCAGCAGCGAAGGTACC
AAAAAAGATGTATCCGCACGTGCCCACCTCATCACACTATCCCCCGAATA
ACAGCACGTGTCTGGCCATTGCCGGCAAGGATTTTGCTGTGGTGGCAGGA
GACACACGTTTGAGCACGGGTTACGAGATTCTGTCGCGCAATGTCCCCAA
GCTTTGCAAACTGTACGTTCTCTCTTTCTCTCCCCTTCTCCCTCCCCCGG
CTTCCTTCCTCCTTCCGCTCCCTCTCTTCCTCTCTACATCCTCCTCACCC
TTTTCCACGCGTACCCATTCAATCAAAATAGTACAAGCAAGACCGTGCTT
GCCTCGGCGGGTTGTTTGACGGACGTCCGCACCCTGCAGCAAGTCTTGGA
CATGCGGCTGCGCATGTACGAACACGACAATGGCAAGGAAATCAGCACCC
CCGCCGTCGCCCAGTTGCTGGGAAACACTCTGTATTACCGTCGTTTCTTC
CCTTATTATGCTTTTAATGTCCTGGCGGGTGTGGATGATGAAGGGAAGGG
CTGTGTCTTCTCTTACGATGCGGTCGGGTCGCATGAACGGGTGGAGTATT
CAGCCAGTGGATCAGGGCAAGCTTTTGTCATTCCCCTCCTCGACAATATC
GTGGGCTTCAAAAACCGACAAGACTCCAAGCCGGAGTACACCGCTGAGCA
GGTTGTGGCGATTTGCAAGGACGCTTTCCTGACCGCGGGCGAGCGTGACA
TTTATACGGGAGATGCGGTGATGATCAGCGTCATTACCTCGAAGGGGGTG
ACGACAGAGACCTTCCACTTAAAGAAGGATTAAGGGATGGGATTGGTAGG
AGAGGGGATGGGGGGGAGGCAGACAATGTGATATGTGTGAAGTCGGGGGT
CGAAACGACAGATGAAGGGAAAGAGGACAAAGAAAGAAAGAGAACACAAA
AT
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Coding sequence (CDS) from alignment at chr11:765573..767024-

>NO11G02410.1 ID=NO11G02410.1|Name=NO11G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr11:765573..767024- (Nannochloropsis oceanica)
ATGCGCACCATCATCTCAGGCAAGAAGCAGACGACGACCGCCTTCTTCAC
GCCCAGGCACAAAATGACAACACACATGAAGGCGCAACAGCCGGCGGCGG
CTCCCTCCATCTGGTCGACGGAGGGTGCGGCCCGCTTGGGCCAGGGCGTG
ACTATGGCGACTAGTCACGATGACGGCAGCATCGACCACGGCGTGACCCA
GGCGCCTTATGAGCGCCGCTTCTCTCCGTATGATTTCAATGGCGGCACGT
GTCTGGCCATTGCCGGCAAGGATTTTGCTGTGGTGGCAGGAGACACACGT
TTGAGCACGGGTTACGAGATTCTGTCGCGCAATGTCCCCAAGCTTTGCAA
ACTTACAAGCAAGACCGTGCTTGCCTCGGCGGGTTGTTTGACGGACGTCC
GCACCCTGCAGCAAGTCTTGGACATGCGGCTGCGCATGTACGAACACGAC
AATGGCAAGGAAATCAGCACCCCCGCCGTCGCCCAGTTGCTGGGAAACAC
TCTGTATTACCGTCGTTTCTTCCCTTATTATGCTTTTAATGTCCTGGCGG
GTGTGGATGATGAAGGGAAGGGCTGTGTCTTCTCTTACGATGCGGTCGGG
TCGCATGAACGGGTGGAGTATTCAGCCAGTGGATCAGGGCAAGCTTTTGT
CATTCCCCTCCTCGACAATATCGTGGGCTTCAAAAACCGACAAGACTCCA
AGCCGGAGTACACCGCTGAGCAGGTTGTGGCGATTTGCAAGGACGCTTTC
CTGACCGCGGGCGAGCGTGACATTTATACGGGAGATGCGGTGATGATCAG
CGTCATTACCTCGAAGGGGGTGACGACAGAGACCTTCCACTTAAAGAAGG
ATTAA
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Synonyms
Publications