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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:759330..761711 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02380.1 vs.
Match: EWM24966.1 (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 337.0 bits (863), Expect = 1.100e-88 Identity = 220/515 (42.72%), Postives = 304/515 (59.03%), Query Frame = 0
Query: 26 PFNQIQWTIDEHENFLEGLKEFGRSWESISLHLVPTRTTEQVKNYAAHYFYKQAQEAASGAAKPAHVRIASTEDPE-----KKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYFAKLNQLRTCGYEGNYAMDGTRHLTKTFLKKAQRQGRISPGKLKTSFKMTSSRSVVKKRGNRQGKALARLQGGSST---------LRRVASQAGEGLGQDQAEAEKEGEEK-----DGSLLQLAITSYTTRSGRVVTWAQPLQH---TLTQAQATAAMIGDKAEGRTIQEGEDDSKLKAAPMVIAAPVGLTMDTSASQEGEGEEVMNVFDHNYAEDQHDAKQEEQSERVKKVAEIDSAAEVVAVASTLPTPGTVADIMTSLTVDSLGFLHWDEAGSVSEG-----WTVLPKVADERNDMSSLSAATIATHGPAELMSSTSSSGSTVSSSSSSSSRSEGA-TQRDSMLLMMSSADGSLLWESDGYNAEEDDNNSLTRPPTSPAAATA 513
P WT +EH FLEGLK++GRSWESIS L+PTRT E++KNYA+ Y Q ++ R AST+ + + GHWTDEEHEFFL+CWAKYGKSWKKIS+VMKTR+NEQ+RTHAQKYF KL+QLRTCGYEG+Y MDGTRHLTKTFLKKAQ +GR+ G ++ FK+ + R V K+ NR+ K LAR++G S + GE G D E E+ G E+ D + + +++YTTRSGRVVT+++P QH T ++A+ A+G + E + ++A +V + G+T+DT G ++ D +H A +E E + V+ V++++PTP T+ D++++ T+D GF W+ +G +G WT V+ S+ G A L SS SS+ ++ +S+ S SS ++G TQRD M++MM SAD SL WES+ YN E+DD+NSLTRPP SP A A
Sbjct: 77 PIASSDWTTEEHARFLEGLKQYGRSWESISTLLLPTRTPEEIKNYASLYLVNQPKDLTPP-------RTASTKGKDGASAARAKEGHWTDEEHEFFLKCWAKYGKSWKKISQVMKTRSNEQIRTHAQKYFTKLDQLRTCGYEGSYTMDGTRHLTKTFLKKAQCEGRLESGSWRSRFKLKNPRGVAKRHANRRKKVLARIRGSSGRSPYGHRHWRYGDHVGEEGEEEGDDVEEDEESGSERLEGGHDATSVCGTLSTYTTRSGRVVTFSRPSQHVQDTNSEAEENEER-SHTADGIYVGEMPTYTHDESALLVES---GMTIDTGVHTGRLGMAIVRDDDVK----EHHAPKEGYEELSRDVS---------GVSASIPTPRTMVDVLSAFTMDPEGFPQWEYSGRREQGASLHPWTENDTVSARSGSDVFESSTKCVPQGYAALTSSVSSAATSAASNFSDSSCADGLKTQRDDMVMMMCSADDSLFWESESYNEEQDDDNSLTRPPVSPNADAA 567
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02380.1 ID=NO11G02380.1|Name=NO11G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2382bp CAGCATGGCAAGGCAGGCAGGGGGCGTGCTGTGCTTTGGCGCATTACTGT CCTTCGTTTCGCCCTTCATTTAGCCTGCCCCCATTCGTAACCTAAGCCGA AGCCCCCACCATTATATGTGTTCACACATTTAAATGTGCCATTCGTACTT CTATCCCTTATTTCCACTCCCCGGCCCAACACAGAACCTCCTTCCCGTTT GTGCACCCTTCCATCCGGTCCACCATGACTATCCCGTGCACCCCCTTCAC TGCCAGCGCATACACATCCACCTCTTCCAACGCTGCCAGCGGCCTGCCCC CTTTCAACCAGATCCAGTGGACCATCGATGAGCATGAAAATTTTCTGGAG GGCCTCAAGGAGTTTGGCCGCTCCTGGGAGTCTATCTCTCTGCACCTCGT CCCCACCCGTACCACAGAGCAAGTCAAGAACTACGCCGCGCACTACTTCT ACAAGCAAGCCCAGGAAGCCGCATCGGGCGCTGCGAAACCTGCCCATGTT CGTATTGCTTCTACAGAAGATCCTGAAAAGAAGGACAATGGGCATTGGAC GGACGAGGAGCACGAGTTTTTCTTGGAATGCTGGGCCAAGTACGGCAAGT CCTGGAAGAAAATCTCGGAAGTGATGAAGACCCGCACCAACGAACAGGTT AGGACGCACGCCCAGAAGTATTTTGCCAAGCTTAATCAGCTCCGTACCTG TGGATACGAAGGCAACTATGCCATGGACGGTACGCGGCATTTGACAAAGA CGTTTTTAAAGAAAGCCCAGAGGCAAGGTCGCATCTCGCCGGGCAAACTG AAAACCAGTTTCAAGATGACCAGCTCTCGCAGCGTGGTGAAGAAGCGAGG TAACCGCCAAGGGAAGGCTTTGGCTCGTCTTCAAGGCGGGAGCTCAACTC TGCGTCGGGTCGCGTCCCAGGCAGGGGAGGGTTTGGGGCAGGATCAGGCT GAGGCAGAGAAAGAGGGGGAGGAGAAGGATGGGAGCTTGCTGCAGCTCGC CATCACCAGCTACACCACTCGCAGCGGCCGTGTGGTCACCTGGGCCCAGC CATTGCAGCACACCCTGACGCAAGCTCAAGCTACCGCGGCCATGATAGGG GACAAGGCCGAGGGCCGCACAATACAGGAGGGCGAGGACGACAGCAAGCT AAAGGCAGCCCCGATGGTGATTGCGGCTCCGGTGGGACTGACGATGGACA CGAGCGCCAGTCAGGAAGGAGAGGGAGAGGAGGTTATGAACGTTTTCGAT CACAATTATGCGGAAGATCAGCACGATGCCAAGCAGGAGGAGCAGAGCGA GCGCGTCAAGAAGGTGGCGGAGATAGACTCCGCCGCAGAGGTGGTAGCTG TGGCATCGACCTTACCTACCCCGGGCACGGTTGCCGACATTATGACCTCT CTTACCGTGGACTCCCTTGGCTTCCTGCATTGGGATGAGGCTGGTTCCGT GTCTGAAGGATGGACAGTACTGCCAAAGGTGGCGGATGAGCGTAACGATA TGAGCTCGCTCTCTGCTGCCACAATAGCCACGCACGGCCCGGCGGAATTG ATGAGCAGCACTAGCAGCAGCGGTAGCACGGTGAGCAGCAGCAGTAGCAG CAGCAGCAGATCCGAAGGAGCGACGCAGCGAGACTCAATGCTCTTGATGA TGAGCAGCGCTGATGGCAGCCTTTTGTGGGAGTCGGACGGGTATAACGCA GAGGAGGACGACAACAACAGCCTGACACGCCCGCCTACGTCACCCGCTGC GGCTACCGCGCCCTGGGCGGCCGAAGAAGATGATTTTTGGAAGGAAGCGG ATGAGGAAAAGGAAGAGGGGGAAGCAACAGCCAGCAAAGATGGTGCGGCG GTGTTTCAGATTTGATTGAACCCTATAGAAGGAAAGAGACTATGGAGTAA GGGTAAGCATTTGACTGTTGGGTATGATGGAGAAAGTAGACATGGCAAGG AACGGATTTGGAGAGAAGTCCTCAATATTTCGTGTGCAATATAAGAAACA AGGAGAGGGTAAGCGGTAATTGGCATCTGTCCTAGCTTGTAAAAACGACA TTTTGTGTAAAGCATTTACCGAAACATTAGGCGGCAGCAGTAGCATGGCA GCGAGGAAGGTCTCAGGGAGGAAAACGAAGTTGCTGGCATTTATTTCACG TACAGCTACTCAACTTGTTTGCTTTGTAGACACAAATTGCAGATTAGAAC ACCTCTGCAAAGGAACAGCTTATAATTAGAAGAGCAGGAAAAGATTCATG AAGAGAGAAGACAACATGACTTAGATTTACCTGACCGCGCAAACGATGAT ATTCAGAATGTAAAAATGCGGCTTGTATTTTTGGTGACTGCATGGCCGTG GCATGAACTCGAGCAAGATAGGGAAATAAGTT back to topprotein sequence of NO11G02380.1 >NO11G02380.1-protein ID=NO11G02380.1-protein|Name=NO11G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp MTIPCTPFTASAYTSTSSNAASGLPPFNQIQWTIDEHENFLEGLKEFGRS WESISLHLVPTRTTEQVKNYAAHYFYKQAQEAASGAAKPAHVRIASTEDP EKKDNGHWTDEEHEFFLECWAKYGKSWKKISEVMKTRTNEQVRTHAQKYF AKLNQLRTCGYEGNYAMDGTRHLTKTFLKKAQRQGRISPGKLKTSFKMTS SRSVVKKRGNRQGKALARLQGGSSTLRRVASQAGEGLGQDQAEAEKEGEE KDGSLLQLAITSYTTRSGRVVTWAQPLQHTLTQAQATAAMIGDKAEGRTI QEGEDDSKLKAAPMVIAAPVGLTMDTSASQEGEGEEVMNVFDHNYAEDQH DAKQEEQSERVKKVAEIDSAAEVVAVASTLPTPGTVADIMTSLTVDSLGF LHWDEAGSVSEGWTVLPKVADERNDMSSLSAATIATHGPAELMSSTSSSG STVSSSSSSSSRSEGATQRDSMLLMMSSADGSLLWESDGYNAEEDDNNSL TRPPTSPAAATAPWAAEEDDFWKEADEEKEEGEATASKDGAAVFQI* back to topmRNA from alignment at chr11:759330..761711+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02380.1 ID=NO11G02380.1|Name=NO11G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2382bp|location=Sequence derived from alignment at chr11:759330..761711+ (Nannochloropsis oceanica) CAGCATGGCAAGGCAGGCAGGGGGCGTGCTGTGCTTTGGCGCATTACTGT
CCTTCGTTTCGCCCTTCATTTAGCCTGCCCCCATTCGTAACCTAAGCCGA
AGCCCCCACCATTATATGTGTTCACACATTTAAATGTGCCATTCGTACTT
CTATCCCTTATTTCCACTCCCCGGCCCAACACAGAACCTCCTTCCCGTTT
GTGCACCCTTCCATCCGGTCCACCATGACTATCCCGTGCACCCCCTTCAC
TGCCAGCGCATACACATCCACCTCTTCCAACGCTGCCAGCGGCCTGCCCC
CTTTCAACCAGATCCAGTGGACCATCGATGAGCATGAAAATTTTCTGGAG
GGCCTCAAGGAGTTTGGCCGCTCCTGGGAGTCTATCTCTCTGCACCTCGT
CCCCACCCGTACCACAGAGCAAGTCAAGAACTACGCCGCGCACTACTTCT
ACAAGCAAGCCCAGGAAGCCGCATCGGGCGCTGCGAAACCTGCCCATGTT
CGTATTGCTTCTACAGAAGATCCTGAAAAGAAGGACAATGGGCATTGGAC
GGACGAGGAGCACGAGTTTTTCTTGGAATGCTGGGCCAAGTACGGCAAGT
CCTGGAAGAAAATCTCGGAAGTGATGAAGACCCGCACCAACGAACAGGTT
AGGACGCACGCCCAGAAGTATTTTGCCAAGCTTAATCAGCTCCGTACCTG
TGGATACGAAGGCAACTATGCCATGGACGGTACGCGGCATTTGACAAAGA
CGTTTTTAAAGAAAGCCCAGAGGCAAGGTCGCATCTCGCCGGGCAAACTG
AAAACCAGTTTCAAGATGACCAGCTCTCGCAGCGTGGTGAAGAAGCGAGG
TAACCGCCAAGGGAAGGCTTTGGCTCGTCTTCAAGGCGGGAGCTCAACTC
TGCGTCGGGTCGCGTCCCAGGCAGGGGAGGGTTTGGGGCAGGATCAGGCT
GAGGCAGAGAAAGAGGGGGAGGAGAAGGATGGGAGCTTGCTGCAGCTCGC
CATCACCAGCTACACCACTCGCAGCGGCCGTGTGGTCACCTGGGCCCAGC
CATTGCAGCACACCCTGACGCAAGCTCAAGCTACCGCGGCCATGATAGGG
GACAAGGCCGAGGGCCGCACAATACAGGAGGGCGAGGACGACAGCAAGCT
AAAGGCAGCCCCGATGGTGATTGCGGCTCCGGTGGGACTGACGATGGACA
CGAGCGCCAGTCAGGAAGGAGAGGGAGAGGAGGTTATGAACGTTTTCGAT
CACAATTATGCGGAAGATCAGCACGATGCCAAGCAGGAGGAGCAGAGCGA
GCGCGTCAAGAAGGTGGCGGAGATAGACTCCGCCGCAGAGGTGGTAGCTG
TGGCATCGACCTTACCTACCCCGGGCACGGTTGCCGACATTATGACCTCT
CTTACCGTGGACTCCCTTGGCTTCCTGCATTGGGATGAGGCTGGTTCCGT
GTCTGAAGGATGGACAGTACTGCCAAAGGTGGCGGATGAGCGTAACGATA
TGAGCTCGCTCTCTGCTGCCACAATAGCCACGCACGGCCCGGCGGAATTG
ATGAGCAGCACTAGCAGCAGCGGTAGCACGGTGAGCAGCAGCAGTAGCAG
CAGCAGCAGATCCGAAGGAGCGACGCAGCGAGACTCAATGCTCTTGATGA
TGAGCAGCGCTGATGGCAGCCTTTTGTGGGAGTCGGACGGGTATAACGCA
GAGGAGGACGACAACAACAGCCTGACACGCCCGCCTACGTCACCCGCTGC
GGCTACCGCGCCCTGGGCGGCCGAAGAAGATGATTTTTGGAAGGAAGCGG
ATGAGGAAAAGGAAGAGGGGGAAGCAACAGCCAGCAAAGATGGTGCGGCG
GTGTTTCAGATTTGATTGAACCCTATAGAAGGAAAGAGACTATGGAGTAA
GGGTAAGCATTTGACTGTTGGGTATGATGGAGAAAGTAGACATGGCAAGG
AACGGATTTGGAGAGAAGTCCTCAATATTTCGTGTGCAATATAAGAAACA
AGGAGAGGGTAAGCGGTAATTGGCATCTGTCCTAGCTTGTAAAAACGACA
TTTTGTGTAAAGCATTTACCGAAACATTAGGCGGCAGCAGTAGCATGGCA
GCGAGGAAGGTCTCAGGGAGGAAAACGAAGTTGCTGGCATTTATTTCACG
TACAGCTACTCAACTTGTTTGCTTTGTAGACACAAATTGCAGATTAGAAC
ACCTCTGCAAAGGAACAGCTTATAATTAGAAGAGCAGGAAAAGATTCATG
AAGAGAGAAGACAACATGACTTAGATTTACCTGACCGCGCAAACGATGAT
ATTCAGAATGTAAAAATGCGGCTTGTATTTTTGGTGACTGCATGGCCGTG
GCATGAACTCGAGCAAGATAGGGAAATAAGTT back to topCoding sequence (CDS) from alignment at chr11:759330..761711+ >NO11G02380.1 ID=NO11G02380.1|Name=NO11G02380.1|organism=Nannochloropsis oceanica|type=CDS|length=1641bp|location=Sequence derived from alignment at chr11:759330..761711+ (Nannochloropsis oceanica) ATGACTATCCCGTGCACCCCCTTCACTGCCAGCGCATACACATCCACCTC TTCCAACGCTGCCAGCGGCCTGCCCCCTTTCAACCAGATCCAGTGGACCA TCGATGAGCATGAAAATTTTCTGGAGGGCCTCAAGGAGTTTGGCCGCTCC TGGGAGTCTATCTCTCTGCACCTCGTCCCCACCCGTACCACAGAGCAAGT CAAGAACTACGCCGCGCACTACTTCTACAAGCAAGCCCAGGAAGCCGCAT CGGGCGCTGCGAAACCTGCCCATGTTCGTATTGCTTCTACAGAAGATCCT GAAAAGAAGGACAATGGGCATTGGACGGACGAGGAGCACGAGTTTTTCTT GGAATGCTGGGCCAAGTACGGCAAGTCCTGGAAGAAAATCTCGGAAGTGA TGAAGACCCGCACCAACGAACAGGTTAGGACGCACGCCCAGAAGTATTTT GCCAAGCTTAATCAGCTCCGTACCTGTGGATACGAAGGCAACTATGCCAT GGACGGTACGCGGCATTTGACAAAGACGTTTTTAAAGAAAGCCCAGAGGC AAGGTCGCATCTCGCCGGGCAAACTGAAAACCAGTTTCAAGATGACCAGC TCTCGCAGCGTGGTGAAGAAGCGAGGTAACCGCCAAGGGAAGGCTTTGGC TCGTCTTCAAGGCGGGAGCTCAACTCTGCGTCGGGTCGCGTCCCAGGCAG GGGAGGGTTTGGGGCAGGATCAGGCTGAGGCAGAGAAAGAGGGGGAGGAG AAGGATGGGAGCTTGCTGCAGCTCGCCATCACCAGCTACACCACTCGCAG CGGCCGTGTGGTCACCTGGGCCCAGCCATTGCAGCACACCCTGACGCAAG CTCAAGCTACCGCGGCCATGATAGGGGACAAGGCCGAGGGCCGCACAATA CAGGAGGGCGAGGACGACAGCAAGCTAAAGGCAGCCCCGATGGTGATTGC GGCTCCGGTGGGACTGACGATGGACACGAGCGCCAGTCAGGAAGGAGAGG GAGAGGAGGTTATGAACGTTTTCGATCACAATTATGCGGAAGATCAGCAC GATGCCAAGCAGGAGGAGCAGAGCGAGCGCGTCAAGAAGGTGGCGGAGAT AGACTCCGCCGCAGAGGTGGTAGCTGTGGCATCGACCTTACCTACCCCGG GCACGGTTGCCGACATTATGACCTCTCTTACCGTGGACTCCCTTGGCTTC CTGCATTGGGATGAGGCTGGTTCCGTGTCTGAAGGATGGACAGTACTGCC AAAGGTGGCGGATGAGCGTAACGATATGAGCTCGCTCTCTGCTGCCACAA TAGCCACGCACGGCCCGGCGGAATTGATGAGCAGCACTAGCAGCAGCGGT AGCACGGTGAGCAGCAGCAGTAGCAGCAGCAGCAGATCCGAAGGAGCGAC GCAGCGAGACTCAATGCTCTTGATGATGAGCAGCGCTGATGGCAGCCTTT TGTGGGAGTCGGACGGGTATAACGCAGAGGAGGACGACAACAACAGCCTG ACACGCCCGCCTACGTCACCCGCTGCGGCTACCGCGCCCTGGGCGGCCGA AGAAGATGATTTTTGGAAGGAAGCGGATGAGGAAAAGGAAGAGGGGGAAG CAACAGCCAGCAAAGATGGTGCGGCGGTGTTTCAGATTTGA back to top
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