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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:472301..474687 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01360.1 vs.
Match: EWM25066.1 (transcription elongation factor spt5 [Nannochloropsis gaditana]) HSP 1 Score: 1149.4 bits (2972), Expect = 0.000e+0 Identity = 645/797 (80.93%), Postives = 693/797 (86.95%), Query Frame = 0
Query: 1 MADSSSDEEVVVQKKRTERPKLDEEEDGEVEEGEEATGARKPAASSTANDNGNDDDDDDDDDDDDDNDDDDEAPRRTNGRTQADEDDEEDEEDEEDGSDNDSDDSEADSRLRKGGRKRKQTTQV-ASRG-------------------GSRGGDEDEEEEDMESGDELTEREAEKLRQENLYKPRTRTNFEDMLARDSDHQIEERFRAMARTSAHRTQEFYEEAGARQKGVTKQSLLPTPGVDTCMWRVKVKKNQEMPMVMSIIDMARRMTAKKQRVGITAAIFAGTKGHVLVEARNEADASAAVRANSRFILSQRLEVVEYRYMATSLAVSEKVAPKPLKNGQWVRFKRGLYKGDLARVIAILEGGSKVVIELVPRINYEDMARNPRAGNIYVISAASRPAPKFFSASEAREHEVALHRGKHPGLNMPCDVACNLHYMNGYLVKEVKPESLQMENVNATVEEVTKFGLGALAEDDGRGHEERLEAAQREAEETQEQQRKMLRVFESGDAVKVVAGELRNLVCRVLGSDPTTGTVSVRPVNSNLGLPAKIELQTSQLANHVEVGQHVKVVDGIFAGETGMVQALLVVDENGQQASEPVVSILTDGENKEVRVRLGQVKESAEVATGLSSLSGYALHDMVCYGYQRFGVIVWVGRESVKVLDSSGVLQSVPLGELQGNRNRRSQQAVAYDSMNNRMQVEDQVAVTDRGDHFQKRGTIKHILGSTLWVFTKQEPRNSGLFVVRTRAVTLQNLVRRNAAVTFNALHTGGPVRGGVQQQQQQQDGFGGGPGA--GGGRGGG 776
MADSSSDEEVVVQKKRTE K DE GEV GE G K D DDD +++D D ++++EA + G+ + +D E+EED++D SD DSDDSEADSRLRKGGRKRKQ + SRG + GG+E+EEEED+ESGDELTEREAEKLRQE LYKPRTRTNFEDMLARDSDHQIEERFRAMARTSAHRTQ+FYEEA ARQKGVTKQSLLPTPGVDTCMWRVKVKKNQEMPMVMSI+DMARRMTAKKQRVGITAAIFAGTKGHVL+EARNEADASAA+RANSRFILSQRLEVVEYRYMATSLAVSEKVAP+PL++GQWVRFKRGLYKGDLARV+AILEGGSKVVIE+VPRINYEDMARNPRAGNIYV+SAASRP PKFFSASEAREHEV LHRGK PGLNMPCDVACNLHYMNGYLVKEVKPESLQ EN+NA+VEEVTKFGLGALAEDDGRGHEERL+AAQREAEETQEQQRK LRVFE GDAVKVVAGELRNLVCRVLGSDPTTGTVSVRPVN NLGLP KIELQ SQLANHVEVGQHVKV+DG+FAGETGMVQALL DE+G EP+VS+LTDGENKE+RVRLGQVKESA+VATG+SSLSGY+LHDMVCYGYQRFGVIVW+GRESVKVLDSSGV+QSVPLGELQGNRNRRS QA AYDSMNNRMQVEDQV VTDRG+HFQKRG IKHILGS+LW+ TKQE RNSGLFVVRTRAVTLQNL+R+NAAVTFNALHTG P QQ Q GFGGGPG GGGRGGG
Sbjct: 1 MADSSSDEEVVVQKKRTEPLKGDEA--GEVGNGE---GREK------------DVVDDDAEEEDSDEEEEEEAEEASGGKARGGQD--EEEEDDDDESDADSDDSEADSRLRKGGRKRKQRREAETSRGRAGKKSRRRDGRSRFLDQEAAVGGEEEEEEEDVESGDELTEREAEKLRQETLYKPRTRTNFEDMLARDSDHQIEERFRAMARTSAHRTQDFYEEASARQKGVTKQSLLPTPGVDTCMWRVKVKKNQEMPMVMSIMDMARRMTAKKQRVGITAAIFAGTKGHVLIEARNEADASAAIRANSRFILSQRLEVVEYRYMATSLAVSEKVAPRPLRDGQWVRFKRGLYKGDLARVMAILEGGSKVVIEMVPRINYEDMARNPRAGNIYVVSAASRPGPKFFSASEAREHEVVLHRGKIPGLNMPCDVACNLHYMNGYLVKEVKPESLQAENINASVEEVTKFGLGALAEDDGRGHEERLQAAQREAEETQEQQRKNLRVFEQGDAVKVVAGELRNLVCRVLGSDPTTGTVSVRPVNPNLGLPVKIELQASQLANHVEVGQHVKVLDGLFAGETGMVQALLSHDEHGAPVPEPIVSVLTDGENKELRVRLGQVKESADVATGMSSLSGYSLHDMVCYGYQRFGVIVWLGRESVKVLDSSGVVQSVPLGELQGNRNRRSHQAAAYDSMNNRMQVEDQVLVTDRGEHFQKRGAIKHILGSSLWILTKQETRNSGLFVVRTRAVTLQNLIRKNAAVTFNALHTGAP--NPTLQQHHGQRGFGGGPGGGRGGGRGGG 776
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01360.1 ID=NO11G01360.1|Name=NO11G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2331bp
ATGGCTGATTCTTCTTCAGACGAGGAGGTGGTGGTGCAGAAGAAGCGCAC
AGAGCGGCCCAAGCTAGACGAGGAGGAGGACGGCGAGGTGGAGGAGGGGG
AGGAGGCTACCGGGGCCAGGAAGCCCGCTGCCAGCAGCACGGCCAACGAC
AACGGCAACGACGACGACGATGATGACGATGATGACGACGATGACGATAA
TGACGACGATGACGAGGCGCCGCGACGCACCAATGGACGGACTCAAGCCG
ATGAGGATGACGAGGAGGATGAGGAAGACGAGGAAGATGGAAGCGACAAC
GACAGTGACGACAGTGAGGCGGACTCGCGACTAAGAAAGGGTGGCCGTAA
GCGGAAACAGACTACGCAGGTGGCGTCGCGCGGAGGCAGCCGTGGGGGGG
ATGAGGACGAGGAGGAGGAGGACATGGAGTCCGGGGATGAGCTGACGGAA
CGGGAAGCAGAGAAGCTGCGTCAGGAAAATCTGTACAAGCCTCGCACACG
TACAAATTTCGAGGACATGCTTGCGAGGGATTCTGACCATCAGATCGAGG
AGCGTTTTCGGGCGATGGCGAGGACAAGCGCGCACCGGACGCAGGAGTTT
TATGAGGAAGCGGGGGCGAGGCAGAAGGGGGTGACAAAGCAGTCGTTGTT
ACCGACCCCAGGTGTGGATACATGCATGTGGCGGGTCAAGGTGAAGAAGA
ATCAGGAAATGCCGATGGTGATGAGCATTATTGACATGGCGAGGCGGATG
ACGGCGAAGAAACAGAGGGTGGGGATTACGGCTGCGATTTTCGCCGGGAC
GAAAGGGCATGTCTTGGTTGAAGCCAGGAATGAAGCGGATGCATCGGCGG
CAGTGCGGGCAAATTCTCGTTTTATCCTTTCACAGCGGTTGGAGGTGGTG
GAGTACAGATACATGGCAACGTCCTTGGCGGTCTCGGAGAAAGTCGCTCC
GAAGCCCCTGAAAAACGGTCAATGGGTGCGCTTCAAGCGAGGCCTGTACA
AGGGAGATCTCGCCCGTGTCATCGCCATCCTGGAAGGCGGGTCGAAGGTG
GTCATTGAGCTGGTCCCTCGCATCAATTACGAGGACATGGCCCGCAACCC
AAGGGCGGGGAATATATATGTTATCTCGGCGGCTTCGCGACCCGCCCCCA
AATTTTTCTCGGCTTCCGAGGCGAGGGAACACGAGGTGGCCTTGCACAGG
GGAAAGCACCCGGGGTTGAACATGCCTTGTGACGTGGCATGTAATCTGCA
TTACATGAATGGGTATTTGGTAAAGGAAGTGAAGCCTGAGTCGCTGCAGA
TGGAGAATGTGAACGCCACCGTGGAGGAAGTCACGAAATTCGGTTTGGGC
GCCTTGGCGGAAGACGACGGCCGAGGGCATGAAGAAAGGTTAGAGGCCGC
GCAGCGCGAGGCAGAGGAGACCCAGGAACAACAGCGGAAAATGCTCCGTG
TCTTTGAGTCGGGGGATGCGGTGAAGGTGGTGGCGGGGGAATTACGCAAT
CTCGTTTGTCGTGTCCTGGGCTCCGACCCCACCACAGGGACAGTGTCTGT
GCGCCCTGTGAACTCCAATTTGGGGTTGCCGGCCAAGATTGAACTGCAGA
CATCACAGCTGGCAAATCATGTGGAGGTGGGGCAGCACGTCAAGGTAGTG
GACGGGATTTTCGCGGGAGAGACGGGCATGGTTCAGGCCCTGTTGGTAGT
GGACGAGAACGGGCAGCAGGCCTCGGAGCCGGTGGTGAGCATACTCACAG
ACGGGGAGAATAAGGAGGTGAGGGTGAGACTGGGTCAGGTGAAGGAGAGT
GCAGAGGTGGCAACCGGCCTGAGCAGTTTGTCCGGGTATGCGCTGCACGA
CATGGTGTGTTATGGCTACCAGCGCTTTGGGGTCATTGTCTGGGTGGGGA
GGGAGAGCGTAAAGGTGCTGGATTCCTCGGGCGTTTTGCAGTCGGTGCCG
TTGGGGGAGTTGCAGGGGAATCGGAATCGGAGGAGTCAGCAGGCGGTGGC
TTACGACAGCATGAATAATCGCATGCAGGTGGAGGACCAGGTGGCGGTAA
CGGATCGGGGGGATCATTTCCAGAAGCGGGGGACGATCAAGCATATCTTA
GGGTCGACGTTGTGGGTGTTCACGAAACAAGAGCCCAGGAATAGCGGGTT
GTTCGTGGTACGGACACGTGCCGTGACATTGCAGAATCTGGTGCGGAGGA
ATGCGGCTGTGACGTTTAATGCCTTGCACACTGGGGGGCCTGTGCGTGGG
GGGGTGCAGCAGCAGCAACAGCAGCAGGATGGGTTTGGGGGAGGTCCTGG
AGCAGGGGGTGGACGAGGGGGGGGGGGATGA back to topprotein sequence of NO11G01360.1 >NO11G01360.1-protein ID=NO11G01360.1-protein|Name=NO11G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=777bp
MADSSSDEEVVVQKKRTERPKLDEEEDGEVEEGEEATGARKPAASSTAND
NGNDDDDDDDDDDDDDNDDDDEAPRRTNGRTQADEDDEEDEEDEEDGSDN
DSDDSEADSRLRKGGRKRKQTTQVASRGGSRGGDEDEEEEDMESGDELTE
REAEKLRQENLYKPRTRTNFEDMLARDSDHQIEERFRAMARTSAHRTQEF
YEEAGARQKGVTKQSLLPTPGVDTCMWRVKVKKNQEMPMVMSIIDMARRM
TAKKQRVGITAAIFAGTKGHVLVEARNEADASAAVRANSRFILSQRLEVV
EYRYMATSLAVSEKVAPKPLKNGQWVRFKRGLYKGDLARVIAILEGGSKV
VIELVPRINYEDMARNPRAGNIYVISAASRPAPKFFSASEAREHEVALHR
GKHPGLNMPCDVACNLHYMNGYLVKEVKPESLQMENVNATVEEVTKFGLG
ALAEDDGRGHEERLEAAQREAEETQEQQRKMLRVFESGDAVKVVAGELRN
LVCRVLGSDPTTGTVSVRPVNSNLGLPAKIELQTSQLANHVEVGQHVKVV
DGIFAGETGMVQALLVVDENGQQASEPVVSILTDGENKEVRVRLGQVKES
AEVATGLSSLSGYALHDMVCYGYQRFGVIVWVGRESVKVLDSSGVLQSVP
LGELQGNRNRRSQQAVAYDSMNNRMQVEDQVAVTDRGDHFQKRGTIKHIL
GSTLWVFTKQEPRNSGLFVVRTRAVTLQNLVRRNAAVTFNALHTGGPVRG
GVQQQQQQQDGFGGGPGAGGGRGGGG* back to topmRNA from alignment at chr11:472301..474687+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01360.1 ID=NO11G01360.1|Name=NO11G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2387bp|location=Sequence derived from alignment at chr11:472301..474687+ (Nannochloropsis oceanica)
ATGGCTGATTCTTCTTCAGACGAGGAGGTGGTGGTGCAGAAGAAGCGCAC
AGAGCGGCCCAAGCTAGACGAGGAGGAGGACGGCGAGGTGGAGGAGGGGG
AGGAGGCTACCGGGGCCAGGAAGCCCGCTGCCAGCAGCACGGCCAACGAC
AACGGCAACGACGACGACGATGATGACGATGATGACGACGATGACGATAA
TGACGACGATGACGAGGCGCCGCGACGCACCAATGGACGGACTCAAGCCG
ATGAGGATGACGAGGAGGATGAGGAAGACGAGGAAGATGGAAGCGACAAC
GACAGTGACGACAGTGAGGCGGACTCGCGACTAAGAAAGGGTGGCCGTAA
GCGGAAACAGACTACGCAGGTGGCGTCGCGCGGTCAGGCGGCTAAGAAAT
CACGGCGCCGCGATGGACGTAGCCGATTTCTGGACCAGGAGGCAGCCGTG
GGGGGGATGAGGACGAGGAGGAGGAGGACATGGAGTCCGGGGATGAGCTG
ACGGAACGGGAAGCAGAGAAGCTGCGTCAGGAAAATCTGTACAAGCCTCG
CACACGTACAAATTTCGAGGACATGCTTGCGAGGGATTCTGACCATCAGA
TCGAGGAGCGTTTTCGGGCGATGGCGAGGACAAGCGCGCACCGGACGCAG
GAGTTTTATGAGGAAGCGGGGGCGAGGCAGAAGGGGGTGACAAAGCAGTC
GTTGTTACCGACCCCAGGTGTGGATACATGCATGTGGCGGGTCAAGGTGA
AGAAGAATCAGGAAATGCCGATGGTGATGAGCATTATTGACATGGCGAGG
CGGATGACGGCGAAGAAACAGAGGGTGGGGATTACGGCTGCGATTTTCGC
CGGGACGAAAGGGCATGTCTTGGTTGAAGCCAGGAATGAAGCGGATGCAT
CGGCGGCAGTGCGGGCAAATTCTCGTTTTATCCTTTCACAGCGGTTGGAG
GTGGTGGAGTACAGATACATGGCAACGTCCTTGGCGGTCTCGGAGAAAGT
CGCTCCGAAGCCCCTGAAAAACGGTCAATGGGTGCGCTTCAAGCGAGGCC
TGTACAAGGGAGATCTCGCCCGTGTCATCGCCATCCTGGAAGGCGGGTCG
AAGGTGGTCATTGAGCTGGTCCCTCGCATCAATTACGAGGACATGGCCCG
CAACCCAAGGGCGGGGAATATATATGTTATCTCGGCGGCTTCGCGACCCG
CCCCCAAATTTTTCTCGGCTTCCGAGGCGAGGGAACACGAGGTGGCCTTG
CACAGGGGAAAGCACCCGGGGTTGAACATGCCTTGTGACGTGGCATGTAA
TCTGCATTACATGAATGGGTATTTGGTAAAGGAAGTGAAGCCTGAGTCGC
TGCAGATGGAGAATGTGAACGCCACCGTGGAGGAAGTCACGAAATTCGGT
TTGGGCGCCTTGGCGGAAGACGACGGCCGAGGGCATGAAGAAAGGTTAGA
GGCCGCGCAGCGCGAGGCAGAGGAGACCCAGGAACAACAGCGGAAAATGC
TCCGTGTCTTTGAGTCGGGGGATGCGGTGAAGGTGGTGGCGGGGGAATTA
CGCAATCTCGTTTGTCGTGTCCTGGGCTCCGACCCCACCACAGGGACAGT
GTCTGTGCGCCCTGTGAACTCCAATTTGGGGTTGCCGGCCAAGATTGAAC
TGCAGACATCACAGCTGGCAAATCATGTGGAGGTGGGGCAGCACGTCAAG
GTAGTGGACGGGATTTTCGCGGGAGAGACGGGCATGGTTCAGGCCCTGTT
GGTAGTGGACGAGAACGGGCAGCAGGCCTCGGAGCCGGTGGTGAGCATAC
TCACAGACGGGGAGAATAAGGAGGTGAGGGTGAGACTGGGTCAGGTGAAG
GAGAGTGCAGAGGTGGCAACCGGCCTGAGCAGTTTGTCCGGGTATGCGCT
GCACGACATGGTGTGTTATGGCTACCAGCGCTTTGGGGTCATTGTCTGGG
TGGGGAGGGAGAGCGTAAAGGTGCTGGATTCCTCGGGCGTTTTGCAGTCG
GTGCCGTTGGGGGAGTTGCAGGGGAATCGGAATCGGAGGAGTCAGCAGGC
GGTGGCTTACGACAGCATGAATAATCGCATGCAGGTGGAGGACCAGGTGG
CGGTAACGGATCGGGGGGATCATTTCCAGAAGCGGGGGACGATCAAGCAT
ATCTTAGGGTCGACGTTGTGGGTGTTCACGAAACAAGAGCCCAGGAATAG
CGGGTTGTTCGTGGTACGGACACGTGCCGTGACATTGCAGAATCTGGTGC
GGAGGAATGCGGCTGTGACGTTTAATGCCTTGCACACTGGGGGGCCTGTG
CGTGGGGGGGTGCAGCAGCAGCAACAGCAGCAGGATGGGTTTGGGGGAGG
TCCTGGAGCAGGGGGTGGACGAGGGGGGGGGGGATGA back to topCoding sequence (CDS) from alignment at chr11:472301..474687+ >NO11G01360.1 ID=NO11G01360.1|Name=NO11G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=2331bp|location=Sequence derived from alignment at chr11:472301..474687+ (Nannochloropsis oceanica)
ATGGCTGATTCTTCTTCAGACGAGGAGGTGGTGGTGCAGAAGAAGCGCAC
AGAGCGGCCCAAGCTAGACGAGGAGGAGGACGGCGAGGTGGAGGAGGGGG
AGGAGGCTACCGGGGCCAGGAAGCCCGCTGCCAGCAGCACGGCCAACGAC
AACGGCAACGACGACGACGATGATGACGATGATGACGACGATGACGATAA
TGACGACGATGACGAGGCGCCGCGACGCACCAATGGACGGACTCAAGCCG
ATGAGGATGACGAGGAGGATGAGGAAGACGAGGAAGATGGAAGCGACAAC
GACAGTGACGACAGTGAGGCGGACTCGCGACTAAGAAAGGGTGGCCGTAA
GCGGAAACAGACTACGCAGGTGGCGTCGCGCGGAGGCAGCCGTGGGGGGG
ATGAGGACGAGGAGGAGGAGGACATGGAGTCCGGGGATGAGCTGACGGAA
CGGGAAGCAGAGAAGCTGCGTCAGGAAAATCTGTACAAGCCTCGCACACG
TACAAATTTCGAGGACATGCTTGCGAGGGATTCTGACCATCAGATCGAGG
AGCGTTTTCGGGCGATGGCGAGGACAAGCGCGCACCGGACGCAGGAGTTT
TATGAGGAAGCGGGGGCGAGGCAGAAGGGGGTGACAAAGCAGTCGTTGTT
ACCGACCCCAGGTGTGGATACATGCATGTGGCGGGTCAAGGTGAAGAAGA
ATCAGGAAATGCCGATGGTGATGAGCATTATTGACATGGCGAGGCGGATG
ACGGCGAAGAAACAGAGGGTGGGGATTACGGCTGCGATTTTCGCCGGGAC
GAAAGGGCATGTCTTGGTTGAAGCCAGGAATGAAGCGGATGCATCGGCGG
CAGTGCGGGCAAATTCTCGTTTTATCCTTTCACAGCGGTTGGAGGTGGTG
GAGTACAGATACATGGCAACGTCCTTGGCGGTCTCGGAGAAAGTCGCTCC
GAAGCCCCTGAAAAACGGTCAATGGGTGCGCTTCAAGCGAGGCCTGTACA
AGGGAGATCTCGCCCGTGTCATCGCCATCCTGGAAGGCGGGTCGAAGGTG
GTCATTGAGCTGGTCCCTCGCATCAATTACGAGGACATGGCCCGCAACCC
AAGGGCGGGGAATATATATGTTATCTCGGCGGCTTCGCGACCCGCCCCCA
AATTTTTCTCGGCTTCCGAGGCGAGGGAACACGAGGTGGCCTTGCACAGG
GGAAAGCACCCGGGGTTGAACATGCCTTGTGACGTGGCATGTAATCTGCA
TTACATGAATGGGTATTTGGTAAAGGAAGTGAAGCCTGAGTCGCTGCAGA
TGGAGAATGTGAACGCCACCGTGGAGGAAGTCACGAAATTCGGTTTGGGC
GCCTTGGCGGAAGACGACGGCCGAGGGCATGAAGAAAGGTTAGAGGCCGC
GCAGCGCGAGGCAGAGGAGACCCAGGAACAACAGCGGAAAATGCTCCGTG
TCTTTGAGTCGGGGGATGCGGTGAAGGTGGTGGCGGGGGAATTACGCAAT
CTCGTTTGTCGTGTCCTGGGCTCCGACCCCACCACAGGGACAGTGTCTGT
GCGCCCTGTGAACTCCAATTTGGGGTTGCCGGCCAAGATTGAACTGCAGA
CATCACAGCTGGCAAATCATGTGGAGGTGGGGCAGCACGTCAAGGTAGTG
GACGGGATTTTCGCGGGAGAGACGGGCATGGTTCAGGCCCTGTTGGTAGT
GGACGAGAACGGGCAGCAGGCCTCGGAGCCGGTGGTGAGCATACTCACAG
ACGGGGAGAATAAGGAGGTGAGGGTGAGACTGGGTCAGGTGAAGGAGAGT
GCAGAGGTGGCAACCGGCCTGAGCAGTTTGTCCGGGTATGCGCTGCACGA
CATGGTGTGTTATGGCTACCAGCGCTTTGGGGTCATTGTCTGGGTGGGGA
GGGAGAGCGTAAAGGTGCTGGATTCCTCGGGCGTTTTGCAGTCGGTGCCG
TTGGGGGAGTTGCAGGGGAATCGGAATCGGAGGAGTCAGCAGGCGGTGGC
TTACGACAGCATGAATAATCGCATGCAGGTGGAGGACCAGGTGGCGGTAA
CGGATCGGGGGGATCATTTCCAGAAGCGGGGGACGATCAAGCATATCTTA
GGGTCGACGTTGTGGGTGTTCACGAAACAAGAGCCCAGGAATAGCGGGTT
GTTCGTGGTACGGACACGTGCCGTGACATTGCAGAATCTGGTGCGGAGGA
ATGCGGCTGTGACGTTTAATGCCTTGCACACTGGGGGGCCTGTGCGTGGG
GGGGTGCAGCAGCAGCAACAGCAGCAGGATGGGTTTGGGGGAGGTCCTGG
AGCAGGGGGTGGACGAGGGGGGGGGGGATGA back to top
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