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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr11 | genome | chr11:418772..422033 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01160.1 vs.
Match: XP_005856296.1 (ran protein binding protein, partial [Nannochloropsis gaditana CCMP526]; EKU20076.1 ran protein binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 216.1 bits (549), Expect = 3.400e-52 Identity = 146/280 (52.14%), Postives = 188/280 (67.14%), Query Frame = 0
Query: 14 MASTSSSTTGIRPRATSRPGSSSSSTMSSSSNVRKPTPEKVGRKFILAYYPVMSKSAEELIKFYKEDSSFSHTNIAEVTEGQDNKPAYGLDQIRARIDALDLGGAVVDITSVDVQSSKDGAVLILVQGVMTRRGGKPPRAFVQTFFLAQQENNETHYYLLNDVFRTLEE-----PPVTTRSP-TPTPPAAISLSSSIVKTAAGAASVSLSPKCETVAVVQEEGDKERKEGGQDMGAEGEEQQLQEQQQQQTLQRKIEEGEGALAMNGIREEAQGKKKDKK 288
MAST S+ + R T+ G+SSS +++SS V+KPTPEKVGR+F+L YYPVMSKSAE+LIKFYKEDS FSH + E EGQD+K A GL++IRARI+AL+LGGAVVDI SVDVQ SKDGAVL+LVQG+M RR P AFVQTFFLAQQENNE HYYLLNDVFR E PP SP PTP S +S + +AA +++ +A VQ E + ++ G E +E++ +E + Q +E G G A G +EE +G+++++K
Sbjct: 5 MASTKSTKSSSETRNTNS-GNSSSKCVTNSSYVKKPTPEKVGRRFVLTYYPVMSKSAEDLIKFYKEDSCFSH--VPETEEGQDSKAAVGLEEIRARIEALNLGGAVVDIRSVDVQPSKDGAVLVLVQGLMRRRSAPAPSAFVQTFFLAQQENNEAHYYLLNDVFRAWPETPSAHPPSFPSSPGPPTPDPPRSEASPVTASAAAEKEGAMA-----IARVQAEAMRGQEGVGVQERKETKEEEEEEVEAGAVAQAGMERG-GKEAWAGSKEEGRGRRRERK 275
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01160.1 ID=NO11G01160.1|Name=NO11G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2867bp TCTCGCCGTCATGATGCATCGCCGCGTGCCTTATCTTGTCCTCTCACCTC TGGCTTGTCCATGTCTCCCACAAAACACAACACCAACTTGATCGGGAATG GCAAAAAATACAGCACACGACAAGCAACCAGCACGAGTAGTCTTGGCCCG GTCTTGTCGGGTCGTTTCCTTGGCTTGACTTTATAGCCTCCCCTTGGTTG ACATTGCACCATCTTAATCTAGACCTGAACCAAAACAACGACAAGCCAAG CACACGTCCAAACCAATGACTGTCAACCACGACGTGCTGTGGGAGCTCCA GCGCCAGTACGCACGTGGAGATCCTATTCGTCGCCGCAGCAGTGTCTCAT CCCCACTTAAGCAACTCATTCGTTCCACTCATGCACACGAACACAGGCGG AGAGACGGAGACGAAGACGATGGCCTCAACGAGCAGCAGCACGACTGGCA TTAGGCCCCGTGCCACGAGCAGGCCTGGTAGCAGTAGTAGCAGCACAATG AGCAGTTCTAGCAATGTCAGGAAGCCCACACCTGAAAAAGTTGGCCGCAA GTTCATTTTAGCATACTATCCCGTCATGTCCAAAAGTGCGGAGGAGCTCA TCAAGTTCTACAAGGAGGATTCCTCCTTCTCTCATACTAACATAGCGGAA GTCACCGAGGGCCAAGACAACAAACCCGCCTACGGCCTCGACCAAATCCG GGCCCGCATCGATGCTCTGGATCTGGGCGGGGCCGTCGTAGACATTACGA GTGTGGACGTGCAGTCCTCAAAAGACGGCGCTGTCCTCATCCTCGTCCAA GGCGTCATGACCCGGCGTGGTGGCAAGCCGCCTCGTGCTTTCGTGCAAAC CTTCTTCCTGGCCCAGCAGGAGAACAACGAGACGCATTACTATCTGCTCA ACGACGTGTTCCGTACGTTGGAAGAGCCGCCTGTGACCACGCGCTCTCCT ACTCCTACCCCACCAGCAGCCATCTCCTTATCATCCTCTATTGTCAAAAC GGCCGCTGGGGCCGCGTCTGTTTCCCTGTCCCCCAAATGTGAAACGGTGG CGGTCGTTCAAGAGGAAGGAGACAAAGAAAGGAAGGAGGGGGGGCAGGAT ATGGGAGCGGAAGGAGAAGAGCAACAGTTGCAGGAGCAGCAGCAACAGCA AACATTGCAGAGAAAGATTGAGGAAGGGGAAGGAGCATTGGCGATGAACG GCATAAGGGAGGAAGCTCAAGGGAAGAAGAAGGATAAGAAGAAGAAGGCT GTGGAGGAGAGAGGCCTTTCCCCTGAAGCTTCATCTTTCACTACCTCCTC ATCTTCTACTGGCGATCCTCCCTTGGTGCCTGTGGCTACGCACACGCCTC CTCTGCTAGTGGGGGAGGCCGCGCCGCCGCCTCAGCAGCAGCAGCAACCG CAAGGGGTGGAGAAGGAGAAGGGTAATGTGGTGGAGCATAAGCATCAAAA GCAGCAAAAGGATGACTCTGGGAGAAGAGAAAGTGGCCCATCTGCTGCTG CTGCTCCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCTCCTGCTCATACA CTTGCTCCTTTATCCGGCCCTCCACCGAGCTGGAGCGCAATTGTAGGGAA GAAGGGCGAGGAAGAGGAGCATAGAGAAGTGAAGATCAGCGGCAGTAGCA GCAGCAGCAGGTCGGGCGGAGTACGGGGTAGAGGCAGGGGCGACAGTCCA GCACACAGCCGTGGTGGGTCCTCTTCTCCCTCGAAAAAGGGACGCAGGGA AGGCGGAGCAGGAGGTAGAGAAGGTGGGCAAGTATACGTGCATGGGTCAG CCGGCGTTGGTGCTGGTGCTGCTGGTGGTGTGGGTTTGGACGAGCCACCG ACTGCGGTGTACGTGAAATGTAAAGCGGCTGAAGGGGCAGAACTGGGGAC ACACCAAGACGAGCTGTGTGCCTTGTTGCTGGGGATGGCGGTCGAGGGGG ACTCGGTGCTGAGCTATAAGGTGAATAAGAGCCAGTTTTCCGTGTTCGTG GAGTTCGAGAAGCCAGAGTCAGTTGCGCGAATCATGGCGGCGTCGAGGGC GGAGCCGAAGCGATTTTTCTTAGTGAATAGCGTGCAGGGGAGGAGCAGGT TTAATCTGTATCTGGACGTGAAGCGGCCGCCGGGACAGCCGGGCGTGAGC CATGTGATGGGAAGCAGGGAGGGAGGGTTTAGGGTTGTGGGGGGAGCGGG ACAGGATCACGGAGACCAACAGGGAGGGGTCGGAAGAAGAGGAGGAGGAG GAGGGATGGGCGGAAGAGGGGGAGGAGAAAAGGGGGGATATCAGTACAGC AGCGGCAGCAGCAGCAACATCACGACTAACACCACCACAAGCAACAATAA GGATCGGCCAGCAGGGCCGAATGGCGCGGGGCGGAGCCGTGTCCGCCGGG AGGCACAAAAGCGAGAAAAGTAATTTAAAGTAGAATGAAGTTACCGCTTT GACTGAAGAAGTGAAACGATTGAAGTGTGGCAGAGTAAGTGTGTAAGGAG CTGGGTGTTCAGAAATGCGTATATATATATGTGCCTCTGCCTCCTGCTGG AAGGAGAAGGAGTAGGATATATTATAGGGTAGAAGAGAAGGAAAAGAGAC AAGTTGAATGTGTGTGATTCGGAACCTGTGAGCGTGTGCGAAGAAGCGAG AGGATGGCACAAGGGTAGAAAAAAAGGAAACAACAATATTGGACCGGTAA CGTGTTGGGGAAGATAGAGTGTAAGCTGATCGGGGAGAAAGAGAGGTAAC CATCCCAAAATGATCTCGACAGGATCACTCTATCGCGAAACAGAATGCAT GACGCATCACTCTTTACATGCACACATAGACACACATAGACACGCCAGTC CACAAAAGGTGAAAGGA back to topprotein sequence of NO11G01160.1 >NO11G01160.1-protein ID=NO11G01160.1-protein|Name=NO11G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=681bp MHTNTGGETETKTMASTSSSTTGIRPRATSRPGSSSSSTMSSSSNVRKPT PEKVGRKFILAYYPVMSKSAEELIKFYKEDSSFSHTNIAEVTEGQDNKPA YGLDQIRARIDALDLGGAVVDITSVDVQSSKDGAVLILVQGVMTRRGGKP PRAFVQTFFLAQQENNETHYYLLNDVFRTLEEPPVTTRSPTPTPPAAISL SSSIVKTAAGAASVSLSPKCETVAVVQEEGDKERKEGGQDMGAEGEEQQL QEQQQQQTLQRKIEEGEGALAMNGIREEAQGKKKDKKKKAVEERGLSPEA SSFTTSSSSTGDPPLVPVATHTPPLLVGEAAPPPQQQQQPQGVEKEKGNV VEHKHQKQQKDDSGRRESGPSAAAAPAAPAAAPAAAPAHTLAPLSGPPPS WSAIVGKKGEEEEHREVKISGSSSSSRSGGVRGRGRGDSPAHSRGGSSSP SKKGRREGGAGGREGGQVYVHGSAGVGAGAAGGVGLDEPPTAVYVKCKAA EGAELGTHQDELCALLLGMAVEGDSVLSYKVNKSQFSVFVEFEKPESVAR IMAASRAEPKRFFLVNSVQGRSRFNLYLDVKRPPGQPGVSHVMGSREGGF RVVGGAGQDHGDQQGGVGRRGGGGGMGGRGGGEKGGYQYSSGSSSNITTN TTTSNNKDRPAGPNGAGRSRVRREAQKREK* back to topmRNA from alignment at chr11:418772..422033+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01160.1 ID=NO11G01160.1|Name=NO11G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=3262bp|location=Sequence derived from alignment at chr11:418772..422033+ (Nannochloropsis oceanica) TCTCGCCGTCATGATGCATCGCCGCGTGCCTTATCTTGTCCTCTCACCTC
TGGCTTGTCCATGTCTCCCACAAAACACAACACCAACTTGATCGGGAATG
GCAAAAAATACAGCACACGACAAGCAACCAGCACGAGTAGTCTTGGCCCG
GTCTTGTCGGGTCGTTTCCTTGGCTTGACTTTATAGCCTCCCCTTGGTTG
ACATTGCACCATCTTAATCTAGACCTGAACCAAAACAACGACAAGCCAAG
CACACGTCCAAACCAATGACTGTCAACCACGACGTGCTGTGGGAGCTCCA
GCGCCAGTACGCACGTGGAGATCCTATTCGTCGCCGCAGCAGTGTCTCAT
CCCCACTTAAGCAACTCATTCGTTCCACTCATGCACACGAACACAGGCGG
AGAGACGGAGACGAAGACGATGGCCTCAACGAGCAGCAGCACGACTGGCA
TTAGGCCCCGTGCCACGAGCAGGCCTGGTAGCAGTAGTAGCAGCACAATG
AGCAGTTCTAGCAATGTCAGGAAGCCCACACCTGAAAAAGTTGGCCGCAA
GTTAGTAACAAGTCTCTCCCTTTGCATCCTAAATTTGTTTCCTTTTCCTC
ATTCAAGAGCATCAAATATTCACCATCAAACAGTCAATGCACTTCTCATT
TTCTAACCGTGCTCATTCTACATTTTGAAGGTTCATTTTAGCATACTATC
CCGTCATGTCCAAAAGTGCGGAGGAGCTCATCAAGTTCTACAAGGAGGAT
TCCTCCTTCTCTCATACTAACATAGCGGAAGGTACGTCGTAGACTCGACT
TTAGCAAAGAAGGGGAATAGGAGTAGGAGAGTAAAGGATCAGGAAGATAG
ATTTGTTTTGACGTCTTTTCGTTTTTGCTCAGGCTGATGACTTGTCTGCT
AACATGCCTGTCGTCTCTGATACTTCTTTTCTCTTACTGATACTTTCCCC
CTTTTGTGTATTTTACCCCATTTTCTCTGCAACTTGTGAAAATTTCTCCT
GTCACCTTCCCTTTCTCTTATCCCCATCAAAACCTCTACTCTCAAGTCAC
CGAGGGCCAAGACAACAAACCCGCCTACGGCCTCGACCAAATCCGGGCCC
GCATCGATGCTCTGGATCTGGGCGGGGCCGTCGTAGACATTACGAGTGTG
GACGTGCAGTCCTCAAAAGACGGCGCTGTCCTCATCCTCGTCCAAGGCGT
CATGACCCGGCGTGGTGGCAAGCCGCCTCGTGCTTTCGTGCAAACCTTCT
TCCTGGCCCAGCAGGAGAACAACGAGACGCATTACTATCTGCTCAACGAC
GTGTTCCGTACGTTGGAAGAGCCGCCTGTGACCACGCGCTCTCCTACTCC
TACCCCACCAGCAGCCATCTCCTTATCATCCTCTATTGTCAAAACGGCCG
CTGGGGCCGCGTCTGTTTCCCTGTCCCCCAAATGTGAAACGGTGGCGGTC
GTTCAAGAGGAAGGAGACAAAGAAAGGAAGGAGGGGGGGCAGGATATGGG
AGCGGAAGGAGAAGAGCAACAGTTGCAGGAGCAGCAGCAACAGCAAACAT
TGCAGAGAAAGATTGAGGAAGGGGAAGGAGCATTGGCGATGAACGGCATA
AGGGAGGAAGCTCAAGGGAAGAAGAAGGATAAGAAGAAGAAGGCTGTGGA
GGAGAGAGGCCTTTCCCCTGAAGCTTCATCTTTCACTACCTCCTCATCTT
CTACTGGCGATCCTCCCTTGGTGCCTGTGGCTACGCACACGCCTCCTCTG
CTAGTGGGGGAGGCCGCGCCGCCGCCTCAGCAGCAGCAGCAACCGCAAGG
GGTGGAGAAGGAGAAGGGTAATGTGGTGGAGCATAAGCATCAAAAGCAGC
AAAAGGATGACTCTGGGAGAAGAGAAAGTGGCCCATCTGCTGCTGCTGCT
CCTGCTGCTCCTGCTGCTGCTCCTGCTGCTGCTCCTGCTCATACACTTGC
TCCTTTATCCGGCCCTCCACCGAGCTGGAGCGCAATTGTAGGGAAGAAGG
GCGAGGAAGAGGAGCATAGAGAAGTGAAGATCAGCGGCAGTAGCAGCAGC
AGCAGGTCGGGCGGAGTACGGGGTAGAGGCAGGGGCGACAGTCCAGCACA
CAGCCGTGGTGGGTCCTCTTCTCCCTCGAAAAAGGGACGCAGGGAAGGCG
GAGCAGGAGGTAGAGAAGGTGGGCAAGTATACGTGCATGGGTCAGCCGGC
GTTGGTGCTGGTGCTGCTGGTGGTGTGGGTTTGGACGAGCCACCGACTGC
GGTGTACGTGAAATGTAAAGCGGCTGAAGGGGCAGAACTGGGGACACACC
AAGACGAGCTGTGTGCCTTGTTGCTGGGGATGGCGGTCGAGGGGGACTCG
GTGCTGAGCTATAAGGTGAATAAGAGCCAGTTTTCCGTGTTCGTGGAGTT
CGAGAAGCCAGAGTCAGTTGCGCGAATCATGGCGGCGTCGAGGGCGGAGC
CGAAGCGATTTTTCTTAGTGAATAGCGTGCAGGGGAGGAGCAGGTTTAAT
CTGTATCTGGACGTGAAGCGGCCGCCGGGACAGCCGGGCGTGAGCCATGT
GATGGGAAGCAGGGAGGGAGGGTTTAGGGTTGTGGGGGGAGCGGGACAGG
ATCACGGAGACCAACAGGGAGGGGTCGGAAGAAGAGGAGGAGGAGGAGGG
ATGGGCGGAAGAGGGGGAGGAGAAAAGGGGGGATATCAGTACAGCAGCGG
CAGCAGCAGCAACATCACGACTAACACCACCACAAGCAACAATAAGGATC
GGCCAGCAGGGCCGAATGGCGCGGGGCGGAGCCGTGTCCGCCGGGAGGCA
CAAAAGCGAGAAAAGTAATTTAAAGTAGAATGAAGTTACCGCTTTGACTG
AAGAAGTGAAACGATTGAAGTGTGGCAGAGTAAGTGTGTAAGGAGCTGGG
TGTTCAGAAATGCGTATATATATATGTGCCTCTGCCTCCTGCTGGAAGGA
GAAGGAGTAGGATATATTATAGGGTAGAAGAGAAGGAAAAGAGACAAGTT
GAATGTGTGTGATTCGGAACCTGTGAGCGTGTGCGAAGAAGCGAGAGGAT
GGCACAAGGGTAGAAAAAAAGGAAACAACAATATTGGACCGGTAACGTGT
TGGGGAAGATAGAGTGTAAGCTGATCGGGGAGAAAGAGAGGTAACCATCC
CAAAATGATCTCGACAGGATCACTCTATCGCGAAACAGAATGCATGACGC
ATCACTCTTTACATGCACACATAGACACACATAGACACGCCAGTCCACAA
AAGGTGAAAGGA back to topCoding sequence (CDS) from alignment at chr11:418772..422033+ >NO11G01160.1 ID=NO11G01160.1|Name=NO11G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=2043bp|location=Sequence derived from alignment at chr11:418772..422033+ (Nannochloropsis oceanica) ATGCACACGAACACAGGCGGAGAGACGGAGACGAAGACGATGGCCTCAAC GAGCAGCAGCACGACTGGCATTAGGCCCCGTGCCACGAGCAGGCCTGGTA GCAGTAGTAGCAGCACAATGAGCAGTTCTAGCAATGTCAGGAAGCCCACA CCTGAAAAAGTTGGCCGCAAGTTCATTTTAGCATACTATCCCGTCATGTC CAAAAGTGCGGAGGAGCTCATCAAGTTCTACAAGGAGGATTCCTCCTTCT CTCATACTAACATAGCGGAAGTCACCGAGGGCCAAGACAACAAACCCGCC TACGGCCTCGACCAAATCCGGGCCCGCATCGATGCTCTGGATCTGGGCGG GGCCGTCGTAGACATTACGAGTGTGGACGTGCAGTCCTCAAAAGACGGCG CTGTCCTCATCCTCGTCCAAGGCGTCATGACCCGGCGTGGTGGCAAGCCG CCTCGTGCTTTCGTGCAAACCTTCTTCCTGGCCCAGCAGGAGAACAACGA GACGCATTACTATCTGCTCAACGACGTGTTCCGTACGTTGGAAGAGCCGC CTGTGACCACGCGCTCTCCTACTCCTACCCCACCAGCAGCCATCTCCTTA TCATCCTCTATTGTCAAAACGGCCGCTGGGGCCGCGTCTGTTTCCCTGTC CCCCAAATGTGAAACGGTGGCGGTCGTTCAAGAGGAAGGAGACAAAGAAA GGAAGGAGGGGGGGCAGGATATGGGAGCGGAAGGAGAAGAGCAACAGTTG CAGGAGCAGCAGCAACAGCAAACATTGCAGAGAAAGATTGAGGAAGGGGA AGGAGCATTGGCGATGAACGGCATAAGGGAGGAAGCTCAAGGGAAGAAGA AGGATAAGAAGAAGAAGGCTGTGGAGGAGAGAGGCCTTTCCCCTGAAGCT TCATCTTTCACTACCTCCTCATCTTCTACTGGCGATCCTCCCTTGGTGCC TGTGGCTACGCACACGCCTCCTCTGCTAGTGGGGGAGGCCGCGCCGCCGC CTCAGCAGCAGCAGCAACCGCAAGGGGTGGAGAAGGAGAAGGGTAATGTG GTGGAGCATAAGCATCAAAAGCAGCAAAAGGATGACTCTGGGAGAAGAGA AAGTGGCCCATCTGCTGCTGCTGCTCCTGCTGCTCCTGCTGCTGCTCCTG CTGCTGCTCCTGCTCATACACTTGCTCCTTTATCCGGCCCTCCACCGAGC TGGAGCGCAATTGTAGGGAAGAAGGGCGAGGAAGAGGAGCATAGAGAAGT GAAGATCAGCGGCAGTAGCAGCAGCAGCAGGTCGGGCGGAGTACGGGGTA GAGGCAGGGGCGACAGTCCAGCACACAGCCGTGGTGGGTCCTCTTCTCCC TCGAAAAAGGGACGCAGGGAAGGCGGAGCAGGAGGTAGAGAAGGTGGGCA AGTATACGTGCATGGGTCAGCCGGCGTTGGTGCTGGTGCTGCTGGTGGTG TGGGTTTGGACGAGCCACCGACTGCGGTGTACGTGAAATGTAAAGCGGCT GAAGGGGCAGAACTGGGGACACACCAAGACGAGCTGTGTGCCTTGTTGCT GGGGATGGCGGTCGAGGGGGACTCGGTGCTGAGCTATAAGGTGAATAAGA GCCAGTTTTCCGTGTTCGTGGAGTTCGAGAAGCCAGAGTCAGTTGCGCGA ATCATGGCGGCGTCGAGGGCGGAGCCGAAGCGATTTTTCTTAGTGAATAG CGTGCAGGGGAGGAGCAGGTTTAATCTGTATCTGGACGTGAAGCGGCCGC CGGGACAGCCGGGCGTGAGCCATGTGATGGGAAGCAGGGAGGGAGGGTTT AGGGTTGTGGGGGGAGCGGGACAGGATCACGGAGACCAACAGGGAGGGGT CGGAAGAAGAGGAGGAGGAGGAGGGATGGGCGGAAGAGGGGGAGGAGAAA AGGGGGGATATCAGTACAGCAGCGGCAGCAGCAGCAACATCACGACTAAC ACCACCACAAGCAACAATAAGGATCGGCCAGCAGGGCCGAATGGCGCGGG GCGGAGCCGTGTCCGCCGGGAGGCACAAAAGCGAGAAAAGTAA back to top
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