NO11G00660.2, NO11G00660.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00660.2
Unique NameNO11G00660.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1755
Alignment locationchr11:280579..282699 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:280579..282699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G00660.2 vs.
Match: XP_005855678.1 (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana CCMP526]; EKU20682.1 short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 279.6 bits (714), Expect = 9.100e-72
Identity = 153/222 (68.92%), Postives = 178/222 (80.18%), Query Frame = 0 
Query:   33 SQVKSELEGRAFTALVNTIEAGGSTSPMETQDLPYLKRLLETNTVGTLGLVQIFLPLIREQGSRIVLMSSLCAHLTPPLFGGLCASKAALESLADAMRRELAPFQISISSIEPAVTSPAEENEGG---GQKA-------REVYAHLFADDKAQVLVSPSAAGAGGGGAAAAAADAVARAVIHAVSSTHPKIRYPAGRVGRLPAPFVAFVSWGLPGRVQDVLL 245
            ++VKSEL+GR FTALVNTI+AGG+ SP+E+QDL  LKRL + NT GTL +VQ FLPLIRE GSR+VLMSSLCAHLT PLFGGLCASKAALESLADA+RRELA ++IS+SSIEPAV  P E  EGG   G K+        +VYAHLFADDKA+ LVSPSA G  G  +  A A+AVA+ VIHAVSSTHPK+RYPAG +G LPA   AF+SWGLPGR+QD+LL
Sbjct:  122 AKVKSELQGRPFTALVNTIDAGGAISPIESQDLSSLKRLFDINTFGTLAVVQAFLPLIREHGSRLVLMSSLCAHLTSPLFGGLCASKAALESLADALRRELAHYRISVSSIEPAVAFP-EMPEGGKDTGAKSAAAVELDSKVYAHLFADDKARALVSPSANGGEGRRSGTAVAEAVAQVVIHAVSSTHPKLRYPAGYIGHLPASVAAFISWGLPGRMQDLLL 342
The following BLAST results are available for this feature:
BLAST of NO11G00660.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855678.19.100e-7268.92short-chain dehydrogenase reductase sdr, partial [... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00660NO11G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00660.2NO11G00660.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00660.2.cds1NO11G00660.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G00660.2.cds2NO11G00660.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00660.2 ID=NO11G00660.2|Name=NO11G00660.2|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp
CTCATCAGATTAGGCTAGCACCAACAGCGCAAACTAGCGATCATGGCGGG
CGCAGCAGCAAGCGGTGGCAAAGAAAGGCCTGTGAAGCCGCTAGGTTGGG
TATGGTTCAGTGGGCTGATGCTCGGTATGACGGCCTGCCTTCCTTACATC
ATTGAGTACATGTGCTCCAAGTCGTATGCAACACACCGTCATGGCGTGGT
GCTGGTGACGAGCGCGACCTCAGCAGTTGGTAAAGCGGCGTGCTTGGCAT
TGCTGGCAGACGGGTACACGGTTTATGGTGGCGTGCGCGTCAAATCGGAA
GAGCACTTGGTGAAAGAGCTGGGTTCTCCGAAGATCTTACCTATTGTCCT
GGACATCCACAAATCCGAAACAATCGAGGCGGCCGTGGGAAAGGTAAATG
GAGCAGGAAAGGAACAAGTGATTGGATATGTGTATTTGTGAGGCTCTCAT
CACGTTTTCTGTGTGGAATCTATCCCATAGTCGCCTGCATGCCTGTTTTC
ACCCCTTGCTCTCCCTCCCTACCTCCCAGGTGAAGTCCGAGCTCGAAGGG
CGGGCGTTCACTGCTCTTGTCAACACTATCGAAGCCGGTGGCTCCACTAG
TCCGATGGAGACGCAAGACCTGCCCTATCTCAAACGCTTGTTGGAGACAA
ACACCGTAGGCACGCTTGGGCTAGTCCAGATCTTCCTACCTCTCATCCGG
GAGCAAGGCTCGAGGATCGTCCTCATGTCCTCGCTGTGCGCCCACCTGAC
CCCTCCTCTCTTTGGGGGGCTGTGTGCTAGTAAGGCGGCTTTGGAGAGCC
TGGCTGACGCTATGAGGCGGGAACTCGCGCCCTTCCAGATTTCAATCTCG
TCCATCGAACCTGCCGTGACTTCGCCGGCGGAAGAGAATGAGGGGGGGGG
GCAGAAAGCGAGGGAGGTGTATGCTCACTTGTTTGCGGATGATAAAGCGC
AGGTGTTGGTGTCGCCGAGTGCGGCTGGAGCGGGAGGAGGAGGAGCAGCT
GCAGCTGCAGCAGATGCGGTGGCACGGGCGGTGATTCATGCGGTCTCGAG
CACACACCCGAAGATAAGATACCCGGCAGGAAGAGTGGGTCGGCTGCCTG
CACCCTTTGTGGCTTTCGTGTCGTGGGGTCTGCCTGGGAGAGTCCAAGAT
GTCTTGCTTGGCTAGGATAGCGAGGTAGAGGGGTATGAGTGGGGATGATA
TGACAGGATGGGAGGGAGGGAGAGACGACCTAGGTGGGGGAACGAGAGGG
AGGGAAAAGGAAGGAGCGCAGGAGAAAACGGCGGCAGCAGCAAAGGCAAA
GGCAAAGGCAAAGGCAAAGGCAGCAGTGACCGTGGCAATAGCGACCGATA
AAAATGGCCACCGTGTACCATCATTCATGTCATGATGTTGTCTGTTTGGT
TGGATTGGTGAGGGAGGGAAGGAGGGAGAGAGGGGGACTTTGAGAGAACG
ATGAAAGTGGGCTTGGGCTTGCGCAAGGAGGTGATGCGTTTGCAAATTGT
AACTGTGTCAAAGAAAGGTGGATGGAATTTCGCGCACCTTTCTGTGAGTT
TAAATGTGTATGTGTCTCTCAGTGTGTGCACCTTGGACAGACGGTAATTG
AGAGGTGAGAGAGTAAAAGAAAAGGAATTGAGAACGCGAACATGGAAAAG
AAGCTAGAAACCTAGGTACACAGATTAAGTCATGAGCGACAAGGAAAAAG
AAGCAGTAAGGATGTTACACATAATTATATGTACATCACAAATATGAATG
TCTAC
back to top

protein sequence of NO11G00660.2

>NO11G00660.2-protein ID=NO11G00660.2-protein|Name=NO11G00660.2|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MCICEALITFSVWNLSHSRLHACFHPLLSLPTSQVKSELEGRAFTALVNT
IEAGGSTSPMETQDLPYLKRLLETNTVGTLGLVQIFLPLIREQGSRIVLM
SSLCAHLTPPLFGGLCASKAALESLADAMRRELAPFQISISSIEPAVTSP
AEENEGGGQKAREVYAHLFADDKAQVLVSPSAAGAGGGGAAAAAADAVAR
AVIHAVSSTHPKIRYPAGRVGRLPAPFVAFVSWGLPGRVQDVLLG*
back to top

mRNA from alignment at chr11:280579..282699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00660.2 ID=NO11G00660.2|Name=NO11G00660.2|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp|location=Sequence derived from alignment at chr11:280579..282699- (Nannochloropsis oceanica)
CTCATCAGATTAGGCTAGCACCAACAGCGCAAACTAGCGATCATGGCGGG
CGCAGCAGCAAGCGGTGGCAAAGAAAGGCCTGTGAAGCCGCTAGGTTGGG
TATGGTTCAGTGGGCTGATGCTCGGTATGACGGCCTGCCTTCCTTACATC
ATTGAGTACATGTGCTCCAAGTCGTATGCAACACACCGTCATGGCGTGGT
GCTGGTGACGAGCGCGACCTCAGCAGTTGGTAAAGCGGCGTGCTTGGCAT
TGCTGGCAGACGGGTACACGGTACGTGTATGAGGGAGGGTGCGGAGGGTG
GGAATGGAGGGTTGAAATGGACCCGGGATTAAAGTGAGGAAATGAGACGC
AAAGCGAGGGAGTTCGGGTGAGCGAGGGGACAAAGGATGAGCAGAGTAAG
CTAATAGTAACGTGTGCCTGATGAGACATGCTCTCCGTCCTCTTTCCTTT
CAGGTTTATGGTGGCGTGCGCGTCAAATCGGAAGAGCACTTGGTGAAAGA
GCTGGGTTCTCCGAAGATCTTACCTATTGTCCTGGACATCCACAAATCCG
AAACAATCGAGGCGGCCGTGGGAAAGGTAAATGGAGCAGGAAAGGAACAA
GTGATTGGATATGTGTATTTGTGAGGCTCTCATCACGTTTTCTGTGTGGA
ATCTATCCCATAGTCGCCTGCATGCCTGTTTTCACCCCTTGCTCTCCCTC
CCTACCTCCCAGGTGAAGTCCGAGCTCGAAGGGCGGGCGTTCACTGCTCT
TGTCAACACTATCGAAGCCGGTGGCTCCACTAGTCCGATGGAGACGCAAG
ACCTGCCCTATCTCAAACGCTTGTTGGAGACAAACACCGTAGGCACGCTT
GGGCTAGTCCAGATCTTCCTACCTCTCATCCGGTACCTCCTCCTTCTCCT
CATTCCTTCCCCCATTCCCCTTCCCCCACGATCCTCCTATCTTCAACTTT
CTCCCTCCCTCCCTTGCTGTTTCACTACCCTTGAGACGGGAGTATTGATG
CCCGTCTGACTCCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCTTCGCTT
CCTACCCGATGACAGGGAGCAAGGCTCGAGGATCGTCCTCATGTCCTCGC
TGTGCGCCCACCTGACCCCTCCTCTCTTTGGGGGGCTGTGTGCTAGTAAG
GCGGCTTTGGAGAGCCTGGCTGACGCTATGAGGCGGGAACTCGCGCCCTT
CCAGATTTCAATCTCGTCCATCGAACCTGCCGTGACTTCGCCGGCGGAAG
AGAATGAGGGGGGGGGGCAGAAAGCGAGGGAGGTGTATGCTCACTTGTTT
GCGGATGATAAAGCGCAGGTGTTGGTGTCGCCGAGTGCGGCTGGAGCGGG
AGGAGGAGGAGCAGCTGCAGCTGCAGCAGATGCGGTGGCACGGGCGGTGA
TTCATGCGGTCTCGAGCACACACCCGAAGATAAGATACCCGGCAGGAAGA
GTGGGTCGGCTGCCTGCACCCTTTGTGGCTTTCGTGTCGTGGGGTCTGCC
TGGGAGAGTCCAAGATGTCTTGCTTGGCTAGGATAGCGAGGTAGAGGGGT
ATGAGTGGGGATGATATGACAGGATGGGAGGGAGGGAGAGACGACCTAGG
TGGGGGAACGAGAGGGAGGGAAAAGGAAGGAGCGCAGGAGAAAACGGCGG
CAGCAGCAAAGGCAAAGGCAAAGGCAAAGGCAAAGGCAGCAGTGACCGTG
GCAATAGCGACCGATAAAAATGGCCACCGTGTACCATCATTCATGTCATG
ATGTTGTCTGTTTGGTTGGATTGGTGAGGGAGGGAAGGAGGGAGAGAGGG
GGACTTTGAGAGAACGATGAAAGTGGGCTTGGGCTTGCGCAAGGAGGTGA
TGCGTTTGCAAATTGTAACTGTGTCAAAGAAAGGTGGATGGAATTTCGCG
CACCTTTCTGTGAGTTTAAATGTGTATGTGTCTCTCAGTGTGTGCACCTT
GGACAGACGGTAATTGAGAGGTGAGAGAGTAAAAGAAAAGGAATTGAGAA
CGCGAACATGGAAAAGAAGCTAGAAACCTAGGTACACAGATTAAGTCATG
AGCGACAAGGAAAAAGAAGCAGTAAGGATGTTACACATAATTATATGTAC
ATCACAAATATGAATGTCTAC
back to top

Coding sequence (CDS) from alignment at chr11:280579..282699-

>NO11G00660.2 ID=NO11G00660.2|Name=NO11G00660.2|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr11:280579..282699- (Nannochloropsis oceanica)
ATGTGTATTTGTGAGGCTCTCATCACGTTTTCTGTGTGGAATCTATCCCA
TAGTCGCCTGCATGCCTGTTTTCACCCCTTGCTCTCCCTCCCTACCTCCC
AGGTGAAGTCCGAGCTCGAAGGGCGGGCGTTCACTGCTCTTGTCAACACT
ATCGAAGCCGGTGGCTCCACTAGTCCGATGGAGACGCAAGACCTGCCCTA
TCTCAAACGCTTGTTGGAGACAAACACCGTAGGCACGCTTGGGCTAGTCC
AGATCTTCCTACCTCTCATCCGGGAGCAAGGCTCGAGGATCGTCCTCATG
TCCTCGCTGTGCGCCCACCTGACCCCTCCTCTCTTTGGGGGGCTGTGTGC
TAGTAAGGCGGCTTTGGAGAGCCTGGCTGACGCTATGAGGCGGGAACTCG
CGCCCTTCCAGATTTCAATCTCGTCCATCGAACCTGCCGTGACTTCGCCG
GCGGAAGAGAATGAGGGGGGGGGGCAGAAAGCGAGGGAGGTGTATGCTCA
CTTGTTTGCGGATGATAAAGCGCAGGTGTTGGTGTCGCCGAGTGCGGCTG
GAGCGGGAGGAGGAGGAGCAGCTGCAGCTGCAGCAGATGCGGTGGCACGG
GCGGTGATTCATGCGGTCTCGAGCACACACCCGAAGATAAGATACCCGGC
AGGAAGAGTGGGTCGGCTGCCTGCACCCTTTGTGGCTTTCGTGTCGTGGG
GTCTGCCTGGGAGAGTCCAAGATGTCTTGCTTGGCTAG
back to top
Synonyms
Publications