NO11G00490.1, NO11G00490.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G00490.1
Unique Name	NO11G00490.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2576
Alignment location	chr11:216128..218765 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:216128..218765 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO11G00490.1 vs.

BLAST of NO11G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G00490	NO11G00490	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00490.1	NO11G00490.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G00490.1.cds1	NO11G00490.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO11G00490.1.cds2	NO11G00490.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:216128..218765-
coding sequence from alignment at chr11:216128..218765-

mRNA sequence

>NO11G00490.1 ID=NO11G00490.1|Name=NO11G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp
ATGGAGGAAAGGAAGCAGGACAGTGTAGAGGAGGAGGGGGAGGAAGAGGC
GGAAGCGTTGGAAGAGGCGGAAGCGTTGACGAGCATGATTTGGGCGCTGG
ATCGGGCACAGGATGAGCTGGATGGAGGGAAGGAGGGAGGGAGGGAGGGA
CTGATGGCGCCCACATTGTTTTGGGAGGAGGTGGGGAAGAGGGCTGTGGT
ATTAATGTTGAAGAGAATGCTTAATCTGCGGTCTCTGGGGCGATTGGTCT
CGACCCTGGTGAGGGGTGGGGGGAAGGGGGGAAGCGAGGAAAGAAAGGAG
GAACGGAGGGGTGGGATGGTAAGCCCGCGGCTGTTGGAGGCGGTGGAGGC
AACGCTCTTGCAGCAGTTGGAGGGAAGGGGGGAGGGAGGGGGGGAGGGGT
TAAGAGGAGGGGAGGTGGCGTTGGTGGTGGATGTCATGAATGCGCTGTCT
GTCCTAGCTTTTGCTGCTTCGCTGGAGGCGACTGCCGCCGCTGCTGTAAG
CCGCAGCAGCAGCGTTAACGCACACGATTTAGCTGTGGGACTCAATGCGC
TTGTTCGGCTCAAGGAAAAGACAGGCAACAGCGGAAGCAGCTTTGTCCTT
GCTCCCTCTTTCTGGCTCACGTACGAAGAAGCTCTTTGGGCCCGCATCCC
CTCCTCCACCCCCTCCTCCCTCGTCCTCCTCCTCTCCGCACTCCCCTCTC
TCGTCCTGCCCTCTAACCACCGCCTCGACCCCTCCCTCCTCCGTCGTCTC
TCGGAACAAGTAACGGCCCAAATTCAAAAATTTGAAACTTCCGGGCTTAT
TCTCATCCTGGAGTCAATGGCCCGCCTCGGCTACCACCCGGGTACAGACC
TCCTCCCCCTATTTATTGAAAGCCTCCGTGGACGCATGTTGTCCTCCCTC
CTTTCCTCCACCTCGTCCTCCCTCCCTTCCTCCCCGTTCGGGGCACCGAC
ACCCAAGGGCCTCGCCACGTTGACCCGAGTGCTCCTCCGGTTCTCGTTTT
ATCCCGGCCAAGACTTCCTCCTCGCCCTCCATCACGTCCTTCTTCCTTCC
CTGGCCGCCGGCAAGCGCCTGGCCTGGGCTCCTATGGCTCTAGCTGTCTT
CGGCTTCCGCCCTTCCGCCCTCCCTTCCTCCTCCTCCCCTTCATCAACGG
TCGGCGCCTTCCATCGCGCGCTCTACCGAGGGCTGATGCGGAGGGAAGGA
GGGAGAGAGGGAGGGGTAGGGGTGGGAGGGAAGGATCTCAGAAAGATTCA
AACCCTGACGTTGAGCCAATTGGCAGCAATTTTGTGGGGACTTGCAGCAA
TGGGGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGAGGGAGAGATGAGCGG
GTCTTTCGACGAGTGCTGTCTGAGGCCTGTCTAAGGTTGCAGGGACATGG
GCCAGGACCTTTCTCGGCACCTGCAGCAGCAGCAGCAGCAAGGGGAGTAT
TGGCGGAAAATGAGGAGGAGGGAAGGGGAGGATGCCTAAAAGTGAAAGGA
GACGGAGTAGATGAAGAGGAGATGGTGGAGGGGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGTGGTGCCGAGGCTGGAGTGTGACGTGGATGCCCTGACGGTCTACTCT
CGCTTGAGCCAGGCAGGATTATACTACGCATCGCTGTCCTCTTCCTCCCT
CCCTCCCTTCCTTCCTTCCTCATCCTCCTCGAGACAGCAGTTGGTCGAGC
GGTTCTTAATGCTGGTCCGGAGGTATCGGGAGCAGTGCTTGGGGGAGGGA
GGGGGGCAGGGAGGGATGGAAGAAGGGATGGCGATGATGACGACGCCTGA
GGCATGGGCCTTGATGAAGAACATGAGGATAGGATTGGAGGAGAGGGGGT
GGAGGTGCGAGGGTGAAGGGGAGGGAGGAGGGGAGGGAGGGAGGGGGAGG
GTGGGGTGGCTTGGAGAGCCGGATTTGGTGATTTTGAAGCCGGGGAGGGA
GGGAGGGAGGGAGGGGGAGGGGGAGGCGATTGCGGTTATGGTTGTATCGC
CTGGGCAGTACTTTCAAGGTGGCGTTGAATACGACGAGGAAGAGGAAGGG
GAAAGGGAGGGGGAGGGCGGGAAGGAGGGAGGGCGGAAGTCGTCTTTGAT
GCGGGTAAGGCCGTTGGGGGCAGCAGCCTTCCGGTGGAGGGTGCTGAAGA
GGGAATGGAGGAGGGGAAAGGTGGTGGTGGTCACCCCCGAGTCGTGGGAG
GCGTTCGTGGGAAGGGAGGGGGTGAAGGAGCGGGAGAGAAGGGAGGGTGT
AGGTCAGGGGAGGGTGGCGCGAGCGTGAGGGAGGGAGGGGGGGAGGGGGG
AGTTGTAGAAATGAGTGGAAGAGCACAAGAGGAGAGAGGAAATGAAAAAT
GAGTGTCGGAAGACTCCAAGAAATGGGAAGAGAGATAGTGCATGAAGGGT
GTAAGGAAAAAGAATAGCCAGCATAGACGAGAGCGACTCTTGCTGCCCTC
GTTCTTCAATCGTCACTACGACCACCCGCCACTCGATTTTCTTTTTTTTT
TCCTTCCTCCTCCTCCTCCTCCTCCT

protein sequence of NO11G00490.1

>NO11G00490.1-protein ID=NO11G00490.1-protein|Name=NO11G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=776bp
MEERKQDSVEEEGEEEAEALEEAEALTSMIWALDRAQDELDGGKEGGREG
LMAPTLFWEEVGKRAVVLMLKRMLNLRSLGRLVSTLVRGGGKGGSEERKE
ERRGGMVSPRLLEAVEATLLQQLEGRGEGGGEGLRGGEVALVVDVMNALS
VLAFAASLEATAAAAVSRSSSVNAHDLAVGLNALVRLKEKTGNSGSSFVL
APSFWLTYEEALWARIPSSTPSSLVLLLSALPSLVLPSNHRLDPSLLRRL
SEQVTAQIQKFETSGLILILESMARLGYHPGTDLLPLFIESLRGRMLSSL
LSSTSSSLPSSPFGAPTPKGLATLTRVLLRFSFYPGQDFLLALHHVLLPS
LAAGKRLAWAPMALAVFGFRPSALPSSSSPSSTVGAFHRALYRGLMRREG
GREGGVGVGGKDLRKIQTLTLSQLAAILWGLAAMGEGRREGGREGGRDER
VFRRVLSEACLRLQGHGPGPFSAPAAAAAARGVLAENEEEGRGGCLKVKG
DGVDEEEMVEGEEEEEEEEEEEEEEEEEEEEEEEVVPRLECDVDALTVYS
RLSQAGLYYASLSSSSLPPFLPSSSSSRQQLVERFLMLVRRYREQCLGEG
GGQGGMEEGMAMMTTPEAWALMKNMRIGLEERGWRCEGEGEGGGEGGRGR
VGWLGEPDLVILKPGREGGREGEGEAIAVMVVSPGQYFQGGVEYDEEEEG
EREGEGGKEGGRKSSLMRVRPLGAAAFRWRVLKREWRRGKVVVVTPESWE
AFVGREGVKERERREGVGQGRVARA*

mRNA from alignment at chr11:216128..218765-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G00490.1 ID=NO11G00490.1|Name=NO11G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2638bp|location=Sequence derived from alignment at chr11:216128..218765- (Nannochloropsis oceanica)
ATGGAGGAAAGGAAGCAGGACAGTGTAGAGGAGGAGGGGGAGGAAGAGGC
GGAAGCGTTGGAAGAGGCGGAAGCGTTGACGAGCATGATTTGGGCGCTGG
ATCGGGCACAGGATGAGCTGGATGGAGGGAAGGAGGGAGGGAGGGAGGGA
CTGATGGCGCCCACATTGTTTTGGGAGGAGGTGGGGAAGAGGGCTGTGGT
ATTAATGTTGAAGAGAATGCTTAATCTGCGGTCTCTGGGGCGATTGGTCT
CGACCCTGGTGAGGGGTGGGGGGAAGGGGGGAAGCGAGGAAAGAAAGGAG
GAACGGAGGGGTGGGATGGTAAGCCCGCGGCTGTTGGAGGCGGTGGAGGC
AACGCTCTTGCAGCAGTTGGAGGGAAGGGGGGAGGGAGGGGGGGAGGGGT
TAAGAGGAGGGGAGGTGGCGTTGGTGGTGGATGTCATGAATGCGCTGTCT
GTCCTAGGTGCTCCCCCCCCTCTTCCTCTTCCTCTTCCTTCTGTGGTCCG
GCACCTCGTCTTGTCCAAGCTTTTGCTGCTTCGCTGGAGGCGACTGCCGC
CGCTGCTGTAAGCCGCAGCAGCAGCGTTAACGCACACGATTTAGCTGTGG
GACTCAATGCGCTTGTTCGGCTCAAGGAAAAGACAGGCAACAGCGGAAGC
AGCTTTGTCCTTGCTCCCTCTTTCTGGCTCACGTACGAAGAAGCTCTTTG
GGCCCGCATCCCCTCCTCCACCCCCTCCTCCCTCGTCCTCCTCCTCTCCG
CACTCCCCTCTCTCGTCCTGCCCTCTAACCACCGCCTCGACCCCTCCCTC
CTCCGTCGTCTCTCGGAACAAGTAACGGCCCAAATTCAAAAATTTGAAAC
TTCCGGGCTTATTCTCATCCTGGAGTCAATGGCCCGCCTCGGCTACCACC
CGGGTACAGACCTCCTCCCCCTATTTATTGAAAGCCTCCGTGGACGCATG
TTGTCCTCCCTCCTTTCCTCCACCTCGTCCTCCCTCCCTTCCTCCCCGTT
CGGGGCACCGACACCCAAGGGCCTCGCCACGTTGACCCGAGTGCTCCTCC
GGTTCTCGTTTTATCCCGGCCAAGACTTCCTCCTCGCCCTCCATCACGTC
CTTCTTCCTTCCCTGGCCGCCGGCAAGCGCCTGGCCTGGGCTCCTATGGC
TCTAGCTGTCTTCGGCTTCCGCCCTTCCGCCCTCCCTTCCTCCTCCTCCC
CTTCATCAACGGTCGGCGCCTTCCATCGCGCGCTCTACCGAGGGCTGATG
CGGAGGGAAGGAGGGAGAGAGGGAGGGGTAGGGGTGGGAGGGAAGGATCT
CAGAAAGATTCAAACCCTGACGTTGAGCCAATTGGCAGCAATTTTGTGGG
GACTTGCAGCAATGGGGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGAGGG
AGAGATGAGCGGGTCTTTCGACGAGTGCTGTCTGAGGCCTGTCTAAGGTT
GCAGGGACATGGGCCAGGACCTTTCTCGGCACCTGCAGCAGCAGCAGCAG
CAAGGGGAGTATTGGCGGAAAATGAGGAGGAGGGAAGGGGAGGATGCCTA
AAAGTGAAAGGAGACGGAGTAGATGAAGAGGAGATGGTGGAGGGGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGTGGTGCCGAGGCTGGAGTGTGACGTGGATGCCCTG
ACGGTCTACTCTCGCTTGAGCCAGGCAGGATTATACTACGCATCGCTGTC
CTCTTCCTCCCTCCCTCCCTTCCTTCCTTCCTCATCCTCCTCGAGACAGC
AGTTGGTCGAGCGGTTCTTAATGCTGGTCCGGAGGTATCGGGAGCAGTGC
TTGGGGGAGGGAGGGGGGCAGGGAGGGATGGAAGAAGGGATGGCGATGAT
GACGACGCCTGAGGCATGGGCCTTGATGAAGAACATGAGGATAGGATTGG
AGGAGAGGGGGTGGAGGTGCGAGGGTGAAGGGGAGGGAGGAGGGGAGGGA
GGGAGGGGGAGGGTGGGGTGGCTTGGAGAGCCGGATTTGGTGATTTTGAA
GCCGGGGAGGGAGGGAGGGAGGGAGGGGGAGGGGGAGGCGATTGCGGTTA
TGGTTGTATCGCCTGGGCAGTACTTTCAAGGTGGCGTTGAATACGACGAG
GAAGAGGAAGGGGAAAGGGAGGGGGAGGGCGGGAAGGAGGGAGGGCGGAA
GTCGTCTTTGATGCGGGTAAGGCCGTTGGGGGCAGCAGCCTTCCGGTGGA
GGGTGCTGAAGAGGGAATGGAGGAGGGGAAAGGTGGTGGTGGTCACCCCC
GAGTCGTGGGAGGCGTTCGTGGGAAGGGAGGGGGTGAAGGAGCGGGAGAG
AAGGGAGGGTGTAGGTCAGGGGAGGGTGGCGCGAGCGTGAGGGAGGGAGG
GGGGGAGGGGGGAGTTGTAGAAATGAGTGGAAGAGCACAAGAGGAGAGAG
GAAATGAAAAATGAGTGTCGGAAGACTCCAAGAAATGGGAAGAGAGATAG
TGCATGAAGGGTGTAAGGAAAAAGAATAGCCAGCATAGACGAGAGCGACT
CTTGCTGCCCTCGTTCTTCAATCGTCACTACGACCACCCGCCACTCGATT
TTCTTTTTTTTTTCCTTCCTCCTCCTCCTCCTCCTCCT

Coding sequence (CDS) from alignment at chr11:216128..218765-

>NO11G00490.1 ID=NO11G00490.1|Name=NO11G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at chr11:216128..218765- (Nannochloropsis oceanica)
ATGGAGGAAAGGAAGCAGGACAGTGTAGAGGAGGAGGGGGAGGAAGAGGC
GGAAGCGTTGGAAGAGGCGGAAGCGTTGACGAGCATGATTTGGGCGCTGG
ATCGGGCACAGGATGAGCTGGATGGAGGGAAGGAGGGAGGGAGGGAGGGA
CTGATGGCGCCCACATTGTTTTGGGAGGAGGTGGGGAAGAGGGCTGTGGT
ATTAATGTTGAAGAGAATGCTTAATCTGCGGTCTCTGGGGCGATTGGTCT
CGACCCTGGTGAGGGGTGGGGGGAAGGGGGGAAGCGAGGAAAGAAAGGAG
GAACGGAGGGGTGGGATGGTAAGCCCGCGGCTGTTGGAGGCGGTGGAGGC
AACGCTCTTGCAGCAGTTGGAGGGAAGGGGGGAGGGAGGGGGGGAGGGGT
TAAGAGGAGGGGAGGTGGCGTTGGTGGTGGATGTCATGAATGCGCTGTCT
GTCCTAGCTTTTGCTGCTTCGCTGGAGGCGACTGCCGCCGCTGCTGTAAG
CCGCAGCAGCAGCGTTAACGCACACGATTTAGCTGTGGGACTCAATGCGC
TTGTTCGGCTCAAGGAAAAGACAGGCAACAGCGGAAGCAGCTTTGTCCTT
GCTCCCTCTTTCTGGCTCACGTACGAAGAAGCTCTTTGGGCCCGCATCCC
CTCCTCCACCCCCTCCTCCCTCGTCCTCCTCCTCTCCGCACTCCCCTCTC
TCGTCCTGCCCTCTAACCACCGCCTCGACCCCTCCCTCCTCCGTCGTCTC
TCGGAACAAGTAACGGCCCAAATTCAAAAATTTGAAACTTCCGGGCTTAT
TCTCATCCTGGAGTCAATGGCCCGCCTCGGCTACCACCCGGGTACAGACC
TCCTCCCCCTATTTATTGAAAGCCTCCGTGGACGCATGTTGTCCTCCCTC
CTTTCCTCCACCTCGTCCTCCCTCCCTTCCTCCCCGTTCGGGGCACCGAC
ACCCAAGGGCCTCGCCACGTTGACCCGAGTGCTCCTCCGGTTCTCGTTTT
ATCCCGGCCAAGACTTCCTCCTCGCCCTCCATCACGTCCTTCTTCCTTCC
CTGGCCGCCGGCAAGCGCCTGGCCTGGGCTCCTATGGCTCTAGCTGTCTT
CGGCTTCCGCCCTTCCGCCCTCCCTTCCTCCTCCTCCCCTTCATCAACGG
TCGGCGCCTTCCATCGCGCGCTCTACCGAGGGCTGATGCGGAGGGAAGGA
GGGAGAGAGGGAGGGGTAGGGGTGGGAGGGAAGGATCTCAGAAAGATTCA
AACCCTGACGTTGAGCCAATTGGCAGCAATTTTGTGGGGACTTGCAGCAA
TGGGGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGAGGGAGAGATGAGCGG
GTCTTTCGACGAGTGCTGTCTGAGGCCTGTCTAAGGTTGCAGGGACATGG
GCCAGGACCTTTCTCGGCACCTGCAGCAGCAGCAGCAGCAAGGGGAGTAT
TGGCGGAAAATGAGGAGGAGGGAAGGGGAGGATGCCTAAAAGTGAAAGGA
GACGGAGTAGATGAAGAGGAGATGGTGGAGGGGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGTGGTGCCGAGGCTGGAGTGTGACGTGGATGCCCTGACGGTCTACTCT
CGCTTGAGCCAGGCAGGATTATACTACGCATCGCTGTCCTCTTCCTCCCT
CCCTCCCTTCCTTCCTTCCTCATCCTCCTCGAGACAGCAGTTGGTCGAGC
GGTTCTTAATGCTGGTCCGGAGGTATCGGGAGCAGTGCTTGGGGGAGGGA
GGGGGGCAGGGAGGGATGGAAGAAGGGATGGCGATGATGACGACGCCTGA
GGCATGGGCCTTGATGAAGAACATGAGGATAGGATTGGAGGAGAGGGGGT
GGAGGTGCGAGGGTGAAGGGGAGGGAGGAGGGGAGGGAGGGAGGGGGAGG
GTGGGGTGGCTTGGAGAGCCGGATTTGGTGATTTTGAAGCCGGGGAGGGA
GGGAGGGAGGGAGGGGGAGGGGGAGGCGATTGCGGTTATGGTTGTATCGC
CTGGGCAGTACTTTCAAGGTGGCGTTGAATACGACGAGGAAGAGGAAGGG
GAAAGGGAGGGGGAGGGCGGGAAGGAGGGAGGGCGGAAGTCGTCTTTGAT
GCGGGTAAGGCCGTTGGGGGCAGCAGCCTTCCGGTGGAGGGTGCTGAAGA
GGGAATGGAGGAGGGGAAAGGTGGTGGTGGTCACCCCCGAGTCGTGGGAG
GCGTTCGTGGGAAGGGAGGGGGTGAAGGAGCGGGAGAGAAGGGAGGGTGT
AGGTCAGGGGAGGGTGGCGCGAGCGTGA

Synonyms

Publications