NO10G01130.1, NO10G01130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01130.1
Unique NameNO10G01130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1368
Alignment locationchr10:341160..342911 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:341160..342911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01130.1 vs.
Match: EWM25420.1 (s-adenosylmethionine mitochondrial carrier [Nannochloropsis gaditana])

HSP 1 Score: 444.9 bits (1143), Expect = 3.000e-121
Identity = 248/354 (70.06%), Postives = 276/354 (77.97%), Query Frame = 0 
Query:   26 SRSTVIDRRGMFKTASAMSLGLVLASRME---LPSLSSSSAADAATP-SLRPPLVS----ELEVLSTTLTVADTGTTINGTPSSPLQDFISGLAGGAASRASKELLLHPIDTWKTRLQYAKGDEEPAELFRNLYDGVWPALVVGTPAGAAFFATKDVLKGLAKTTFGSKYRILTTIGAVFIANFPYWLIRNPAEVLKTQQQTGLVDSSTAGVIEAVKEEGLGGLYRGYASNIAYAFPTDAIKFVVYEALQNQFTRKLNPLESSALGSAASSVAQLMSTPLDVVRTRIMTDCKSTGEADVP-----TASVWKTARTIAAEEGVGKLFSGLVPRLTRAFLSGAIQFGSYELTKAPF 367
            ++S  +DRR + KTAS  +LG +LA  +    LP +S  S A AAT  SL  P +     E    +      D   T +   SSPLQ+F+SGLAGGAASRASKEL LHPIDTWKTRLQYAKG+E PAELF+NLYDGVWPAL+VGTPAGAAFFATKDVLKGLA+ +FG+++R  TTI AVF AN PYWLIRNPAEVLKTQQQTGL+DS+  G IEAVK+EGL GLYRGY SNIAYAFPTDAIKFVVYEALQ  F+RKLNPLESS LGSAASSVAQLMSTPLDVVRTRIMTD  +    +VP     T SVW+TAR IAAEEGV KLFSGL PRLTRAFLSGAIQFGSYELTK  F
Sbjct:   85 NKSADVDRRNLLKTASVATLGCILAGSINSSPLPLISRPSNAKAATRLSLTDPALKVSRPEPSGKAQEAPRRDASDT-SSEQSSPLQEFLSGLAGGAASRASKELFLHPIDTWKTRLQYAKGNEAPAELFKNLYDGVWPALLVGTPAGAAFFATKDVLKGLARNSFGNEFREATTIAAVFAANIPYWLIRNPAEVLKTQQQTGLIDSTAGGTIEAVKQEGLEGLYRGYVSNIAYAFPTDAIKFVVYEALQKSFSRKLNPLESSVLGSAASSVAQLMSTPLDVVRTRIMTDEAALTNDNVPVSPASTTSVWQTARKIAAEEGVAKLFSGLFPRLTRAFLSGAIQFGSYELTKGAF 437
The following BLAST results are available for this feature:
BLAST of NO10G01130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25420.13.000e-12170.06s-adenosylmethionine mitochondrial carrier [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01130NO10G01130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01130.1NO10G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01130.1.cds1NO10G01130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01130.1.cds2NO10G01130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01130.1.cds3NO10G01130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01130.1 ID=NO10G01130.1|Name=NO10G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
ATGACAGCGGTTCGACCAAAAGACAACAGCAAAGGGGTAAAGATCACGCA
TGTAAAACGAATAAGAAGCAGCAGCTCCCGCTCTACTGTGATTGACCGTC
GGGGAATGTTCAAGACAGCCTCGGCAATGTCATTGGGCTTGGTACTGGCC
AGCCGCATGGAGCTGCCGTCATTGTCATCATCGTCAGCTGCCGACGCCGC
AACACCTTCATTGCGACCACCATTGGTATCAGAATTAGAAGTCTTATCTA
CAACACTTACAGTAGCTGACACTGGCACCACTATCAACGGAACGCCATCC
TCGCCCCTCCAAGACTTCATCTCAGGCCTGGCTGGCGGGGCCGCCTCCCG
AGCAAGCAAAGAGCTGCTCCTCCACCCCATCGATACATGGAAAACACGCT
TGCAATACGCCAAGGGTGACGAAGAGCCGGCGGAGCTGTTTCGAAATCTC
TATGATGGGGTGTGGCCGGCCTTGGTGGTTGGCACCCCTGCTGGGGCAGC
TTTTTTTGCCACGAAGGATGTACTCAAGGGACTTGCGAAGACCACCTTCG
GGAGTAAATATCGGATCCTAACCACAATCGGCGCTGTGTTTATTGCTAAT
TTCCCCTATTGGCTAATTCGGAACCCGGCGGAAGTCCTCAAGACGCAGCA
GCAGACGGGTTTGGTTGATAGTAGTACCGCAGGGGTGATCGAGGCAGTGA
AGGAAGAAGGGCTAGGGGGTCTCTATCGAGGATATGCATCCAATATTGCG
TATGCATTCCCAACGGATGCCATTAAATTTGTCGTGTATGAAGCATTGCA
AAACCAATTCACGCGGAAACTGAACCCTTTGGAGTCGTCCGCTTTGGGCT
CTGCGGCGAGCTCGGTGGCGCAGCTCATGTCTACTCCTTTGGACGTGGTC
AGGACGAGAATAATGACTGACTGTAAGTCTACAGGGGAGGCAGATGTGCC
GACAGCGTCGGTTTGGAAGACGGCACGCACGATTGCGGCGGAGGAAGGGG
TCGGGAAGTTGTTTAGTGGGCTGGTGCCACGCTTGACGAGGGCTTTTTTG
AGTGGAGCGATTCAGTTTGGGTCCTATGAATTAACGAAAGCCCCTTTCAA
GACACACGCGACGCAATGTCCTCTTTCCTCGGGGTTTCAGGAAGAGTATA
GAGAAATGCGCCTCAGTCATCATCATCCAGTCCTCGTGCGCACGTCCGGT
CACCCTCAGCTTTGCTGGCCCTCTCTCCGACTTGAGGACCCTGCTGGGAA
CAAATGCTGCCTCTTACGCACGTATTTGGCAAGCATTTCCGACAATGGCC
AGCATAGAAGGAATGGAGGAAGGGACATAATAAGGCAGCAGGGGACCAGC
AGCACGGAAGGACGGTAG
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protein sequence of NO10G01130.1

>NO10G01130.1-protein ID=NO10G01130.1-protein|Name=NO10G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MTAVRPKDNSKGVKITHVKRIRSSSSRSTVIDRRGMFKTASAMSLGLVLA
SRMELPSLSSSSAADAATPSLRPPLVSELEVLSTTLTVADTGTTINGTPS
SPLQDFISGLAGGAASRASKELLLHPIDTWKTRLQYAKGDEEPAELFRNL
YDGVWPALVVGTPAGAAFFATKDVLKGLAKTTFGSKYRILTTIGAVFIAN
FPYWLIRNPAEVLKTQQQTGLVDSSTAGVIEAVKEEGLGGLYRGYASNIA
YAFPTDAIKFVVYEALQNQFTRKLNPLESSALGSAASSVAQLMSTPLDVV
RTRIMTDCKSTGEADVPTASVWKTARTIAAEEGVGKLFSGLVPRLTRAFL
SGAIQFGSYELTKAPFKTHATQCPLSSGFQEEYREMRLSHHHPVLVRTSG
HPQLCWPSLRLEDPAGNKCCLLRTYLASISDNGQHRRNGGRDIIRQQGTS
STEGR*
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mRNA from alignment at chr10:341160..342911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01130.1 ID=NO10G01130.1|Name=NO10G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp|location=Sequence derived from alignment at chr10:341160..342911- (Nannochloropsis oceanica)
ATGACAGCGGTTCGACCAAAAGACAACAGCAAAGGGGTAAAGATCACGCA
TGTAAAACGAATAAGAAGCAGCAGCTCCCGCTCTACTGTGATTGACCGTC
GGGGAATGTTCAAGACAGCCTCGGCAATGTCATTGGGCTTGGTACTGGCC
AGCCGCATGGAGCTGCCGTCATTGTCATCATCGTCAGCTGCCGACGCCGC
AACACCTTCATTGCGACCACCATTGGTATCAGAATTAGAAGTCTTATCTA
CAACACTTACAGTAGCTGACACTGGCACCACTATCAACGGAACGCCATCC
TCGCCCCTCCAAGACTTCATCTCAGGCCTGGCTGGCGGGGCCGCCTCCCG
AGCAAGCAAAGAGCTGCTCCTCCACCCCATCGATACATGGAAAACACGCT
TGCAATACGCCAAGGGTGACGAAGAGCCGGCGGAGCTGTTTCGAAATCTC
TATGATGGGGTGTGGCCGGCCTTGGTGGTTGGCACCCCTGCTGGGGCAGC
TTTTTTTGCCACGAAGGATGTACTCAAGGGACTTGCGAAGACCACCTTCG
GGAGTAAATATCGGATCCTAACCACAATCGGCGCTGTGTTTATTGCTAAT
TTCCCCTATTGGCTAATTCGGAACCCGGCGGAAGTCCTCAAGACGCAGCA
GCAGACGGGTTTGGTTGATAGTAGTACCGCAGGGGTGATCGAGGCAGTGA
AGGAAGAAGGGCTAGGGGGTCTCTATCGAGGATATGCATCCAATATTGCG
TATGCATTCCCAACGGATGCCATTAAATTTGTCGTGTATGAAGCATTGCA
AAACCAATTCACGCGGAAACTGAACCCTTTGGAGTCGTCCGCTTTGGGCT
CTGCGGCGAGCTCGGTGGCGCAGCTCATGTCTACTCCTTTGGACGTGGTC
AGGACGAGAATAATGACTGACTGTAAGTCTACAGGGGAGGCAGATGTGCC
GACAGCGTCGGTTTGGAAGACGGCACGCACGATTGCGGCGGAGGAAGGGG
TCGGGAAGTTGTTTAGTGGGCTGGTGCCACGCTTGACGAGGGCTTTTTTG
AGTGGAGCGATTCAGTTTGGGTCCTATGAATTAACGAAAGGTGCATTCAG
CAATGCGGGGAAGAAGTAAATGAGGGCAGTAAGTAAAGGCAAACGTGAAG
GACTTTGCTATAAACGGAGTTACCTTTGGAAATGGCACAACAGTTGCCAA
CTTCGGTTTGGTGTTCTGCCGGGCCTTAATTCTTTTTGTTGACAACGTCA
AGGCCGACCGAATACATAAAAATGATCAGGAAATTATGTGAGATGCTTCA
CCGACGTTTTTCTCCCATGTGACGTAATCTCCACCCTCTCAGCCCCTTTC
AAGACACACGCGACGCAATGTCCTCTTTCCTCGGGGTTTCAGGAAGAGTA
TAGAGAAATGCGCCTCAGTCATCATCATCCAGTCCTCGTGCGCACGTCCG
GTCACCCTCAGCTTTGCTGGCCCTCTCTCCGACTTGAGGACCCTGCTGGG
AACAAATGCTGCCTCTTACGCACGTATTTGGCAAGCATTTCCGACAATGG
CCAGCATAGAAGGAATGGAGGAAGGTAGGATACGCTGCTTCTGCTTCATC
GACGGCTGCGAGTTTCGTGTGCAAGCTTGTGGATGGTCAGCCATGGGTCA
AGGCGTAATATGCGCGGAAAAAGCCTCATCTCTTTCCCTTCTATTCACTC
ACATAGGGACATAATAAGGCAGCAGGGGACCAGCAGCACGGAAGGACGGT
AG
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Coding sequence (CDS) from alignment at chr10:341160..342911-

>NO10G01130.1 ID=NO10G01130.1|Name=NO10G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr10:341160..342911- (Nannochloropsis oceanica)
ATGACAGCGGTTCGACCAAAAGACAACAGCAAAGGGGTAAAGATCACGCA
TGTAAAACGAATAAGAAGCAGCAGCTCCCGCTCTACTGTGATTGACCGTC
GGGGAATGTTCAAGACAGCCTCGGCAATGTCATTGGGCTTGGTACTGGCC
AGCCGCATGGAGCTGCCGTCATTGTCATCATCGTCAGCTGCCGACGCCGC
AACACCTTCATTGCGACCACCATTGGTATCAGAATTAGAAGTCTTATCTA
CAACACTTACAGTAGCTGACACTGGCACCACTATCAACGGAACGCCATCC
TCGCCCCTCCAAGACTTCATCTCAGGCCTGGCTGGCGGGGCCGCCTCCCG
AGCAAGCAAAGAGCTGCTCCTCCACCCCATCGATACATGGAAAACACGCT
TGCAATACGCCAAGGGTGACGAAGAGCCGGCGGAGCTGTTTCGAAATCTC
TATGATGGGGTGTGGCCGGCCTTGGTGGTTGGCACCCCTGCTGGGGCAGC
TTTTTTTGCCACGAAGGATGTACTCAAGGGACTTGCGAAGACCACCTTCG
GGAGTAAATATCGGATCCTAACCACAATCGGCGCTGTGTTTATTGCTAAT
TTCCCCTATTGGCTAATTCGGAACCCGGCGGAAGTCCTCAAGACGCAGCA
GCAGACGGGTTTGGTTGATAGTAGTACCGCAGGGGTGATCGAGGCAGTGA
AGGAAGAAGGGCTAGGGGGTCTCTATCGAGGATATGCATCCAATATTGCG
TATGCATTCCCAACGGATGCCATTAAATTTGTCGTGTATGAAGCATTGCA
AAACCAATTCACGCGGAAACTGAACCCTTTGGAGTCGTCCGCTTTGGGCT
CTGCGGCGAGCTCGGTGGCGCAGCTCATGTCTACTCCTTTGGACGTGGTC
AGGACGAGAATAATGACTGACTGTAAGTCTACAGGGGAGGCAGATGTGCC
GACAGCGTCGGTTTGGAAGACGGCACGCACGATTGCGGCGGAGGAAGGGG
TCGGGAAGTTGTTTAGTGGGCTGGTGCCACGCTTGACGAGGGCTTTTTTG
AGTGGAGCGATTCAGTTTGGGTCCTATGAATTAACGAAAGCCCCTTTCAA
GACACACGCGACGCAATGTCCTCTTTCCTCGGGGTTTCAGGAAGAGTATA
GAGAAATGCGCCTCAGTCATCATCATCCAGTCCTCGTGCGCACGTCCGGT
CACCCTCAGCTTTGCTGGCCCTCTCTCCGACTTGAGGACCCTGCTGGGAA
CAAATGCTGCCTCTTACGCACGTATTTGGCAAGCATTTCCGACAATGGCC
AGCATAGAAGGAATGGAGGAAGGGACATAATAAGGCAGCAGGGGACCAGC
AGCACGGAAGGACGGTAG
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Synonyms
Publications