NO09G03750.1, NO09G03750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03750.1
Unique NameNO09G03750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length770
Alignment locationchr9:1080070..1081024 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1080070..1081024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G03750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03750NO09G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03750.1NO09G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03750.1.cds1NO09G03750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03750.1.cds2NO09G03750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03750.1 ID=NO09G03750.1|Name=NO09G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=770bp
AGTACCGCTGCCCACAGTGCGGACCACAAAACGCGCGCAAGGGCCTTACC
CTCCAAGCCCTTCCCTCTCTCCTCTTCCTCCAGCTTAAGCGCTTCGACTT
CGACTACCAGACGATGGATCGACACAAGCTCAACGATGAAGTTCGTTTTC
CCCTGGTGCTGGATCTGAATCCTTTTATGCCTCCCCCTCCCACTGTCCCC
GCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCTTC
CGCCTCCTCCGCCTCCGCCTCCTTCTCCTCCTCCTCCGCCTCCTCCTCCT
CCTCCGCCGCCGCCGCCGCCGCCGCCGAGGCCTCATTCATCACCCTTCCC
TCTCCTTCCTCCTCCTCCCTCCCGCCTGCATCAGACGCTGCTGCTCCCGA
TGCTCGCACTCTCCCTCCCTCCCCCTCTCTATCTCCTCCTTCCTCCTCTT
CTCCTTCTTCAACATCGAAGAGGGGAAGAGCAGGGAAGGGAGGGCAGGAG
GACGAGATGAAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGGAGGATGGCT
CAAAATTCTTCCGGAGTTGGTGGATAAGAGGGGCTCCCAGCGACCGAAGG
AAGAGGGAGAGGGGAAGGAAGGGAGGGAGGGAGGGGCGGAGGGGATGGCG
GCACTGGAGCCCTCTACGAAGGCCGAGAGGATTAACGGCAAGGAAGGAGG
AAAGATGGAGGGCAAGGGGAGGGAAGAAAGGAGGAAGGGGGAGGATATGA
TGACTTCTACCTTCGTCTGA
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protein sequence of NO09G03750.1

>NO09G03750.1-protein ID=NO09G03750.1-protein|Name=NO09G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MDRHKLNDEVRFPLVLDLNPFMPPPPTVPAPSSSSSSSSSSSSPSSASSA
SASFSSSSASSSSSAAAAAAAEASFITLPSPSSSSLPPASDAAAPDARTL
PPSPSLSPPSSSSPSSTSKRGRAGKGGQEDEMKEEEEEEEVEGGWLKILP
ELVDKRGSQRPKEEGEGKEGREGGAEGMAALEPSTKAERINGKEGGKMEG
KGREERRKGEDMMTSTFV*
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mRNA from alignment at chr9:1080070..1081024+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03750.1 ID=NO09G03750.1|Name=NO09G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=955bp|location=Sequence derived from alignment at chr9:1080070..1081024+ (Nannochloropsis oceanica)
AGTACCGCTGCCCACAGTGCGGACCACAAAACGCGCGCAAGGGCCTTACC
CTCCAAGCCCTTCCCTCTCTCCTCTTCCTCCAGCTTAAGCGCTTCGACTT
CGACTACCAGACGATGGATCGACACAAGGTCAGGAGGGAAGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGTTGCTCCTTGTGAG
GTCGCGCTCGCCTAAATTGCTGCGATACCTCGGCTGTTGTTGTGTTCTGA
ACCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCTTCCCTCCCTGC
CTCATTGCAACAGCTCAACGATGAAGTTCGTTTTCCCCTGGTGCTGGATC
TGAATCCTTTTATGCCTCCCCCTCCCACTGTCCCCGCCCCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCTTCCGCCTCCTCCGCCTC
CGCCTCCTTCTCCTCCTCCTCCGCCTCCTCCTCCTCCTCCGCCGCCGCCG
CCGCCGCCGCCGAGGCCTCATTCATCACCCTTCCCTCTCCTTCCTCCTCC
TCCCTCCCGCCTGCATCAGACGCTGCTGCTCCCGATGCTCGCACTCTCCC
TCCCTCCCCCTCTCTATCTCCTCCTTCCTCCTCTTCTCCTTCTTCAACAT
CGAAGAGGGGAAGAGCAGGGAAGGGAGGGCAGGAGGACGAGATGAAGGAG
GAGGAGGAGGAGGAGGAGGTGGAGGGAGGATGGCTCAAAATTCTTCCGGA
GTTGGTGGATAAGAGGGGCTCCCAGCGACCGAAGGAAGAGGGAGAGGGGA
AGGAAGGGAGGGAGGGAGGGGCGGAGGGGATGGCGGCACTGGAGCCCTCT
ACGAAGGCCGAGAGGATTAACGGCAAGGAAGGAGGAAAGATGGAGGGCAA
GGGGAGGGAAGAAAGGAGGAAGGGGGAGGATATGATGACTTCTACCTTCG
TCTGA
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Coding sequence (CDS) from alignment at chr9:1080070..1081024+

>NO09G03750.1 ID=NO09G03750.1|Name=NO09G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at chr9:1080070..1081024+ (Nannochloropsis oceanica)
ATGGATCGACACAAGCTCAACGATGAAGTTCGTTTTCCCCTGGTGCTGGA
TCTGAATCCTTTTATGCCTCCCCCTCCCACTGTCCCCGCCCCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCTTCCGCCTCCTCCGCC
TCCGCCTCCTTCTCCTCCTCCTCCGCCTCCTCCTCCTCCTCCGCCGCCGC
CGCCGCCGCCGCCGAGGCCTCATTCATCACCCTTCCCTCTCCTTCCTCCT
CCTCCCTCCCGCCTGCATCAGACGCTGCTGCTCCCGATGCTCGCACTCTC
CCTCCCTCCCCCTCTCTATCTCCTCCTTCCTCCTCTTCTCCTTCTTCAAC
ATCGAAGAGGGGAAGAGCAGGGAAGGGAGGGCAGGAGGACGAGATGAAGG
AGGAGGAGGAGGAGGAGGAGGTGGAGGGAGGATGGCTCAAAATTCTTCCG
GAGTTGGTGGATAAGAGGGGCTCCCAGCGACCGAAGGAAGAGGGAGAGGG
GAAGGAAGGGAGGGAGGGAGGGGCGGAGGGGATGGCGGCACTGGAGCCCT
CTACGAAGGCCGAGAGGATTAACGGCAAGGAAGGAGGAAAGATGGAGGGC
AAGGGGAGGGAAGAAAGGAGGAAGGGGGAGGATATGATGACTTCTACCTT
CGTCTGA
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Synonyms
Publications