NO09G02250.1, NO09G02250.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G02250.1
Unique Name	NO09G02250.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2494
Alignment location	chr9:679753..682246 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:679753..682246 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO09G02250.1 vs.

BLAST of NO09G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G02250	NO09G02250	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G02250.1	NO09G02250.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G02250.1.cds1	NO09G02250.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:679753..682246-
coding sequence from alignment at chr9:679753..682246-

mRNA sequence

>NO09G02250.1 ID=NO09G02250.1|Name=NO09G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2494bp
ATGATGCCTCCCCGAAGATTCGCCGCGTACGCCTCCCCTATCATTCCTCC
CCCCACCTTCCAATTTCGTCGTCCTCTACAAGCAGAGACTCAACCCTCCC
TCCTCCTTCCTCCTTTTCCTTTTCCTCCTCCACCTGCTTATCCCGCCTAC
ACCACCGCCCTCTCTCCTGAGCCCGTCACATCAGCAGCAGCAGGAGGAGA
AGGAGGGTTATCCTCTCTTTACCCGTCCTCCTCTTTCACTATGCGCCAGG
GCCGCACACGTAAGCCCTCTGAGAAAAAACTCGCGGCTCAAAAAGCCCAG
GAAGAGGGGGAGGACGAGAAGGAGGACGAGGAGGAAGACGAGGCAGACAA
TGGTGATGGGAAGAAAATTGTGTTAGGCATAGGAGAATGCGGTGACGTGG
ATTACTATCCCTCTTTTCTGGAGATGCGCGGAGAGGAGGAGTTGGAGGGT
GCTTCCGGTGTTTCTCGAAAGAAGGGGAAAGAGGAGGATGAGGAGGAGGA
GGACGAGAACGGCCCGGCCGCTGACTTGCATATTTACGCCCGAGATCTCA
ACCGCCTCCTCCACACCTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCC
TCCTCCCCGTCTTCTTTCTCCTCTTTTTCTACCTCTATCTCTTCTTCGAT
GCATTTCGCTTCTTTCTCCCATCCCACCCACCTCCCTTTCCTCTTGCCCG
GGCAGCCTTTGAGAGATTGGAAGAAAAGCACTCTGAAGTCCTTGGCCGAC
GCCATCAATCTCCACCCCTCCGGGTGTCTGGTAAATCACGTGGTTGTCTC
CTCCGTGGTGGGAGGAAGGAGGGAGGAAAGGGGGAAGGAGGCCGTGGGGA
TGCTGGACCCGAGTTCGTCGTTATATTTGTTGACGGTGAGAGAAAGGGGG
GGAGAGAGAAAGAGGGTTAAAAGTGGAAGAAGCGGAGAAGGAGGAGGAGG
AGGAGGAGATGGAGGGAGGTTGAATGTGGAGTTGATGATCGGTAAGGAGG
GAGGGAAGAAAGAGAAGAAGGAGGAGTGCAGCATTCTTCGTCTTTGCTTG
CGACCTGGAAGCCTCCTTCGGGTCGGGTTGCGCACGGCTGGGCGCTTGAC
ACGTCGGACGTTCCAACAAGTGGAGGCGGAGAGCAAGCATAAGCCGTTGC
AGCAGCAGGAGGTGGTGGTCTGTTGCTTTCGGGCAGTGACGCATTTCTTG
GATACATGCACAGGCAGCCCTGTGGCACCTTTTACTGCTGCTGCTTCTAC
CGTTACTGCTACCGTTACTGCTACTGCTGCTGCTCTTGGTGTTGAGGCTA
AAAGCGGTTCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCACCACCT
CGGAAGCGTAAGACCCCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCAGC
ATTGGCAGCACCGATGGAGAAAGGAGAGGGAATGGATGCAAAAAGCAGGG
AGAGGAAGAACACTGTTGCTGCTGCAGTTGTTGCTACTGATACTGCTATT
GCTGCTGCGGTTGGCAAGACACAGAAGAAGAGAGGAGGAGAGATGGGGGA
GTTGAAGAAAAAGGAAAAGGTGGTGAAGACGCAAAAGAAGGAGGTGGATT
CTTCGCAACGTAAGCTTAAGGCTCTCGTGAGAGGCAAGGCAGCGGTGACG
ATGGCGATAGTGGGGAGAAAAGGAGAAAGAGGAGGGAGGGGGAAAGGAGC
GGGTGCACTGGACGAGGAGAGGGAGGAGAAGGTGGAGGAAACGGCGCGCA
GGGAGGAGAAAGAGGGAGAGCCGACGGGTCAGCAGCAGCAGCAGCAGCAG
GTCCTTAAGGTGGAGAAGGGAGGGAGGGAGGAAGGGGTGAGGACCCGGGG
GCTCCGTGCAGTAAGCAATGTCCAGGCAAAAATTAAGACGGGCGAGGGCG
AGGACGAGGACGAGGAGAGCGGGGAGGAGGGAGGTGAAAATGGTAAAAAG
AGGCAGAGGAGCTCCAGGGAGCGAAATATAAGGGGACGAGTGTAGAGAGA
AGGTGTTAGAAGTATGTTTTACTATACGTGGTGGTTGGATAGGGGTGCTG
GGGGCAGGAGGAAGGTAGTTAGGAAGGAAACAAGTACATTTTTTGTGTGT
TGTTTGCATGTTTGTGTCTTCATTTCGGAGTAGAGGGAGAAGAGTGTATG
TTGGTTGGTGATTAGAGTTTGTGCATGTATGAGAGAGAGAAAGAAAAATA
GAGAGAAGAAATGCACTCGCTACTATAGGGAGGGTACACGAGTGTCTCAC
AGCGCGCGGGGGGAGACCATGGGATTGGGGGGGGGGTGTCCTTGTCAAAT
GTAGTATGAGTGGCATGGCTACGGCCCTTCGAGACAGTGTGTGAATGTAC
ATCGTGAAAGACACGCGAGAGTCCCGCAAGAGGTACAGTAGAAAAGTCAT
AAGAAAGAAAAAAGGAGAAAAGGAATCAACAGGCACAGACGACGTCTCCT
CGTCTCCCACCGATGTGCTGCACCTGTCAAAAAGAAAAAGACGC

protein sequence of NO09G02250.1

>NO09G02250.1-protein ID=NO09G02250.1-protein|Name=NO09G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MMPPRRFAAYASPIIPPPTFQFRRPLQAETQPSLLLPPFPFPPPPAYPAY
TTALSPEPVTSAAAGGEGGLSSLYPSSSFTMRQGRTRKPSEKKLAAQKAQ
EEGEDEKEDEEEDEADNGDGKKIVLGIGECGDVDYYPSFLEMRGEEELEG
ASGVSRKKGKEEDEEEEDENGPAADLHIYARDLNRLLHTSSSLSSSSSSS
SSPSSFSSFSTSISSSMHFASFSHPTHLPFLLPGQPLRDWKKSTLKSLAD
AINLHPSGCLVNHVVVSSVVGGRREERGKEAVGMLDPSSSLYLLTVRERG
GERKRVKSGRSGEGGGGGGDGGRLNVELMIGKEGGKKEKKEECSILRLCL
RPGSLLRVGLRTAGRLTRRTFQQVEAESKHKPLQQQEVVVCCFRAVTHFL
DTCTGSPVAPFTAAASTVTATVTATAAALGVEAKSGSTAAAAAAAAAAPP
RKRKTPAAAAAAAATAALAAPMEKGEGMDAKSRERKNTVAAAVVATDTAI
AAAVGKTQKKRGGEMGELKKKEKVVKTQKKEVDSSQRKLKALVRGKAAVT
MAIVGRKGERGGRGKGAGALDEEREEKVEETARREEKEGEPTGQQQQQQQ
VLKVEKGGREEGVRTRGLRAVSNVQAKIKTGEGEDEDEESGEEGGENGKK
RQRSSRERNIRGRV*

mRNA from alignment at chr9:679753..682246-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G02250.1 ID=NO09G02250.1|Name=NO09G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2494bp|location=Sequence derived from alignment at chr9:679753..682246- (Nannochloropsis oceanica)
ATGATGCCTCCCCGAAGATTCGCCGCGTACGCCTCCCCTATCATTCCTCC
CCCCACCTTCCAATTTCGTCGTCCTCTACAAGCAGAGACTCAACCCTCCC
TCCTCCTTCCTCCTTTTCCTTTTCCTCCTCCACCTGCTTATCCCGCCTAC
ACCACCGCCCTCTCTCCTGAGCCCGTCACATCAGCAGCAGCAGGAGGAGA
AGGAGGGTTATCCTCTCTTTACCCGTCCTCCTCTTTCACTATGCGCCAGG
GCCGCACACGTAAGCCCTCTGAGAAAAAACTCGCGGCTCAAAAAGCCCAG
GAAGAGGGGGAGGACGAGAAGGAGGACGAGGAGGAAGACGAGGCAGACAA
TGGTGATGGGAAGAAAATTGTGTTAGGCATAGGAGAATGCGGTGACGTGG
ATTACTATCCCTCTTTTCTGGAGATGCGCGGAGAGGAGGAGTTGGAGGGT
GCTTCCGGTGTTTCTCGAAAGAAGGGGAAAGAGGAGGATGAGGAGGAGGA
GGACGAGAACGGCCCGGCCGCTGACTTGCATATTTACGCCCGAGATCTCA
ACCGCCTCCTCCACACCTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCC
TCCTCCCCGTCTTCTTTCTCCTCTTTTTCTACCTCTATCTCTTCTTCGAT
GCATTTCGCTTCTTTCTCCCATCCCACCCACCTCCCTTTCCTCTTGCCCG
GGCAGCCTTTGAGAGATTGGAAGAAAAGCACTCTGAAGTCCTTGGCCGAC
GCCATCAATCTCCACCCCTCCGGGTGTCTGGTAAATCACGTGGTTGTCTC
CTCCGTGGTGGGAGGAAGGAGGGAGGAAAGGGGGAAGGAGGCCGTGGGGA
TGCTGGACCCGAGTTCGTCGTTATATTTGTTGACGGTGAGAGAAAGGGGG
GGAGAGAGAAAGAGGGTTAAAAGTGGAAGAAGCGGAGAAGGAGGAGGAGG
AGGAGGAGATGGAGGGAGGTTGAATGTGGAGTTGATGATCGGTAAGGAGG
GAGGGAAGAAAGAGAAGAAGGAGGAGTGCAGCATTCTTCGTCTTTGCTTG
CGACCTGGAAGCCTCCTTCGGGTCGGGTTGCGCACGGCTGGGCGCTTGAC
ACGTCGGACGTTCCAACAAGTGGAGGCGGAGAGCAAGCATAAGCCGTTGC
AGCAGCAGGAGGTGGTGGTCTGTTGCTTTCGGGCAGTGACGCATTTCTTG
GATACATGCACAGGCAGCCCTGTGGCACCTTTTACTGCTGCTGCTTCTAC
CGTTACTGCTACCGTTACTGCTACTGCTGCTGCTCTTGGTGTTGAGGCTA
AAAGCGGTTCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCACCACCT
CGGAAGCGTAAGACCCCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCAGC
ATTGGCAGCACCGATGGAGAAAGGAGAGGGAATGGATGCAAAAAGCAGGG
AGAGGAAGAACACTGTTGCTGCTGCAGTTGTTGCTACTGATACTGCTATT
GCTGCTGCGGTTGGCAAGACACAGAAGAAGAGAGGAGGAGAGATGGGGGA
GTTGAAGAAAAAGGAAAAGGTGGTGAAGACGCAAAAGAAGGAGGTGGATT
CTTCGCAACGTAAGCTTAAGGCTCTCGTGAGAGGCAAGGCAGCGGTGACG
ATGGCGATAGTGGGGAGAAAAGGAGAAAGAGGAGGGAGGGGGAAAGGAGC
GGGTGCACTGGACGAGGAGAGGGAGGAGAAGGTGGAGGAAACGGCGCGCA
GGGAGGAGAAAGAGGGAGAGCCGACGGGTCAGCAGCAGCAGCAGCAGCAG
GTCCTTAAGGTGGAGAAGGGAGGGAGGGAGGAAGGGGTGAGGACCCGGGG
GCTCCGTGCAGTAAGCAATGTCCAGGCAAAAATTAAGACGGGCGAGGGCG
AGGACGAGGACGAGGAGAGCGGGGAGGAGGGAGGTGAAAATGGTAAAAAG
AGGCAGAGGAGCTCCAGGGAGCGAAATATAAGGGGACGAGTGTAGAGAGA
AGGTGTTAGAAGTATGTTTTACTATACGTGGTGGTTGGATAGGGGTGCTG
GGGGCAGGAGGAAGGTAGTTAGGAAGGAAACAAGTACATTTTTTGTGTGT
TGTTTGCATGTTTGTGTCTTCATTTCGGAGTAGAGGGAGAAGAGTGTATG
TTGGTTGGTGATTAGAGTTTGTGCATGTATGAGAGAGAGAAAGAAAAATA
GAGAGAAGAAATGCACTCGCTACTATAGGGAGGGTACACGAGTGTCTCAC
AGCGCGCGGGGGGAGACCATGGGATTGGGGGGGGGGTGTCCTTGTCAAAT
GTAGTATGAGTGGCATGGCTACGGCCCTTCGAGACAGTGTGTGAATGTAC
ATCGTGAAAGACACGCGAGAGTCCCGCAAGAGGTACAGTAGAAAAGTCAT
AAGAAAGAAAAAAGGAGAAAAGGAATCAACAGGCACAGACGACGTCTCCT
CGTCTCCCACCGATGTGCTGCACCTGTCAAAAAGAAAAAGACGC

Coding sequence (CDS) from alignment at chr9:679753..682246-

>NO09G02250.1 ID=NO09G02250.1|Name=NO09G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at chr9:679753..682246- (Nannochloropsis oceanica)
ATGATGCCTCCCCGAAGATTCGCCGCGTACGCCTCCCCTATCATTCCTCC
CCCCACCTTCCAATTTCGTCGTCCTCTACAAGCAGAGACTCAACCCTCCC
TCCTCCTTCCTCCTTTTCCTTTTCCTCCTCCACCTGCTTATCCCGCCTAC
ACCACCGCCCTCTCTCCTGAGCCCGTCACATCAGCAGCAGCAGGAGGAGA
AGGAGGGTTATCCTCTCTTTACCCGTCCTCCTCTTTCACTATGCGCCAGG
GCCGCACACGTAAGCCCTCTGAGAAAAAACTCGCGGCTCAAAAAGCCCAG
GAAGAGGGGGAGGACGAGAAGGAGGACGAGGAGGAAGACGAGGCAGACAA
TGGTGATGGGAAGAAAATTGTGTTAGGCATAGGAGAATGCGGTGACGTGG
ATTACTATCCCTCTTTTCTGGAGATGCGCGGAGAGGAGGAGTTGGAGGGT
GCTTCCGGTGTTTCTCGAAAGAAGGGGAAAGAGGAGGATGAGGAGGAGGA
GGACGAGAACGGCCCGGCCGCTGACTTGCATATTTACGCCCGAGATCTCA
ACCGCCTCCTCCACACCTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCC
TCCTCCCCGTCTTCTTTCTCCTCTTTTTCTACCTCTATCTCTTCTTCGAT
GCATTTCGCTTCTTTCTCCCATCCCACCCACCTCCCTTTCCTCTTGCCCG
GGCAGCCTTTGAGAGATTGGAAGAAAAGCACTCTGAAGTCCTTGGCCGAC
GCCATCAATCTCCACCCCTCCGGGTGTCTGGTAAATCACGTGGTTGTCTC
CTCCGTGGTGGGAGGAAGGAGGGAGGAAAGGGGGAAGGAGGCCGTGGGGA
TGCTGGACCCGAGTTCGTCGTTATATTTGTTGACGGTGAGAGAAAGGGGG
GGAGAGAGAAAGAGGGTTAAAAGTGGAAGAAGCGGAGAAGGAGGAGGAGG
AGGAGGAGATGGAGGGAGGTTGAATGTGGAGTTGATGATCGGTAAGGAGG
GAGGGAAGAAAGAGAAGAAGGAGGAGTGCAGCATTCTTCGTCTTTGCTTG
CGACCTGGAAGCCTCCTTCGGGTCGGGTTGCGCACGGCTGGGCGCTTGAC
ACGTCGGACGTTCCAACAAGTGGAGGCGGAGAGCAAGCATAAGCCGTTGC
AGCAGCAGGAGGTGGTGGTCTGTTGCTTTCGGGCAGTGACGCATTTCTTG
GATACATGCACAGGCAGCCCTGTGGCACCTTTTACTGCTGCTGCTTCTAC
CGTTACTGCTACCGTTACTGCTACTGCTGCTGCTCTTGGTGTTGAGGCTA
AAAGCGGTTCCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCACCACCT
CGGAAGCGTAAGACCCCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCAGC
ATTGGCAGCACCGATGGAGAAAGGAGAGGGAATGGATGCAAAAAGCAGGG
AGAGGAAGAACACTGTTGCTGCTGCAGTTGTTGCTACTGATACTGCTATT
GCTGCTGCGGTTGGCAAGACACAGAAGAAGAGAGGAGGAGAGATGGGGGA
GTTGAAGAAAAAGGAAAAGGTGGTGAAGACGCAAAAGAAGGAGGTGGATT
CTTCGCAACGTAAGCTTAAGGCTCTCGTGAGAGGCAAGGCAGCGGTGACG
ATGGCGATAGTGGGGAGAAAAGGAGAAAGAGGAGGGAGGGGGAAAGGAGC
GGGTGCACTGGACGAGGAGAGGGAGGAGAAGGTGGAGGAAACGGCGCGCA
GGGAGGAGAAAGAGGGAGAGCCGACGGGTCAGCAGCAGCAGCAGCAGCAG
GTCCTTAAGGTGGAGAAGGGAGGGAGGGAGGAAGGGGTGAGGACCCGGGG
GCTCCGTGCAGTAAGCAATGTCCAGGCAAAAATTAAGACGGGCGAGGGCG
AGGACGAGGACGAGGAGAGCGGGGAGGAGGGAGGTGAAAATGGTAAAAAG
AGGCAGAGGAGCTCCAGGGAGCGAAATATAAGGGGACGAGTGTAG

Synonyms

Publications