NO09G02130.1, NO09G02130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02130.1
Unique NameNO09G02130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1507
Alignment locationchr9:652503..654163 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:652503..654163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G02130.1 vs.
Match: EWM30112.1 (hypothetical protein Naga_100310g2 [Nannochloropsis gaditana])

HSP 1 Score: 159.5 bits (402), Expect = 2.400e-35
Identity = 108/309 (34.95%), Postives = 160/309 (51.78%), Query Frame = 0 
Query:   86 FRDIHLMEKDQACLRAGHGYVHLLHMREAGGTSLLEVLLEKDGDSSITENRPPLKLFHSEGLTFNISCFTEGGSMVHITSLRNPIDRLVSSYWREGRYATYPGIAEGEAAGETEAGHQSAIEKHVEIFRSQYLQEPVHFKAYVQGLQEQYMQDTELLRTNQVWEGVDNFYVKTLTNRYRPNTTAPVDEEDLALAKRILDNIDVLLITEWMD-SEDESYKEEGKGQLELANYILGVDVAAFPRAHDKTLSLQQPLREIDSDTVAYLEDLNKYDMELYKYAQELLQSRIAGLRALQRQQAGAGGKLQAPLS 394
            FR    M + QAC RA  G   LLHMR+AGGT+L   L      S++ EN     ++ +EG TFN+SCF + G M+ +TSLR P+ R++SSYW EGRY   P             G   A+   +          P+ F+ +V+ +++             VW  VDN+YV+TLTNRYR NT A V + D  LA+RIL + DV++ITEWM  +   +Y +E  G+        G D +      +K + L+    EID +  A +   N +D+ LY++A+ L+  R+A     ++ Q GA  + +  LS
Sbjct:  141 FRRQAEMAQTQACFRARKGSAFLLHMRKAGGTTLRNYL------SALVENDREQLVYVAEGRTFNVSCFHDQGEMMILTSLRQPLARILSSYWYEGRYDYKPA--------PLVPGTDPALAAAIYDETKAKAAVPLSFQDWVRYVRQMDYVRWTRASARGVWYSVDNYYVQTLTNRYRHNTYAEVGKHDYELARRILASFDVVMITEWMGWANQTAYVQESLGE-------KGKDPSRGMNQRNKLIRLRDD-TEIDREMFASVWRANTWDLLLYEFAKNLVTDRLAAFEK-EKLQVGAQERSKEALS 426
The following BLAST results are available for this feature:
BLAST of NO09G02130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30112.12.400e-3534.95hypothetical protein Naga_100310g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02130NO09G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02130.1NO09G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02130.1.cds1NO09G02130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02130.1.cds2NO09G02130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02130.1 ID=NO09G02130.1|Name=NO09G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp
AAACAAGTATCAGAGACCCAGCACCCGCTGCATCCAGCCATGTCTTCGAC
CAGGCGACGCAGAGATCCTTTCTACCCCGCATCGTCATCGCCTTCGTCAT
GGACTGCGGCAGACAGAGACCACTATGAAGTCGGACCCGTCATGACCAAT
CTCTCGCTGTGCGCCCTCGCTTTATCCTGTATTCTGTTTCTGAGATATTA
TATCCTCCAGACGACTGATGGCGCACACAATCTTGCTGCCAAGACCCCCC
CGAAGTACCCTCATCAGGCATTTGTCGTGGATTGGCCACACAGCTTTCGT
GACATTCATCTCATGGAAAAGGACCAGGCATGCCTGCGGGCCGGTCATGG
TTACGTGCATTTACTGCACATGCGTGAGGCAGGCGGTACAAGTTTGCTAG
AGGTCCTGCTGGAGAAAGACGGGGACAGCAGCATTACAGAGAATCGTCCG
CCGCTCAAGCTTTTTCACAGTGAGGGCCTGACCTTCAACATCAGCTGCTT
CACGGAAGGCGGGAGCATGGTCCACATCACCAGCCTCCGCAACCCCATCG
ACCGCTTGGTCAGCAGTTATTGGCGAGAAGGTCGCTATGCTACTTATCCC
GGCATAGCTGAGGGGGAAGCTGCAGGAGAGACAGAGGCTGGCCATCAAAG
CGCCATCGAAAAACACGTCGAAATATTCCGCTCTCAGTACCTTCAAGAGC
CCGTCCACTTCAAAGCATATGTTCAAGGGCTCCAAGAACAGTACATGCAG
GATACCGAGTTGTTGCGTACCAATCAAGTGTGGGAAGGCGTCGATAATTT
CTATGTGAAAACACTCACGAATCGATATCGGCCCAACACAACCGCGCCAG
TCGACGAAGAAGACTTAGCACTAGCCAAGCGCATTTTGGACAACATAGAC
GTCCTTTTGATAACGGAATGGATGGATTCGGAAGATGAATCATACAAGGA
GGAAGGCAAAGGGCAATTGGAATTGGCTAACTACATCTTGGGCGTCGACG
TGGCGGCTTTCCCTCGTGCGCACGATAAGACCTTGTCACTGCAGCAACCT
CTACGGGAGATTGATAGTGATACCGTCGCCTATCTCGAGGACCTCAACAA
GTATGACATGGAGCTCTACAAATACGCACAAGAACTGCTCCAAAGTCGCA
TTGCAGGCCTTCGTGCCTTGCAGCGGCAGCAGGCTGGAGCCGGAGGGAAG
TTGCAGGCGCCTTTGTCACCCGACATGGACACGTGCCGCGAGATGCCGGC
CGAGGGTGTGGTGTTGTCAGATGTACAGCTGTACACATTGTCAGTGCCCG
TGTGTATGCTACCACACCGAGATTTGGTAGAGTAGTGGTGGAGAAGGAGG
GAGAGTACAGGAGTAGGAGGGAGGAAAATAGGGATGTGGCTTTGCTTTGT
GAAGTAAGGGCTTTAGTCGCCTTTTCTGTCCATTGACATTTTATAAAAAG
TGTAGAATAACGAAAACTGTATGTGATGAAGAAGAAACAGTTCAATGAAA
TGAGAAA
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protein sequence of NO09G02130.1

>NO09G02130.1-protein ID=NO09G02130.1-protein|Name=NO09G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MSSTRRRRDPFYPASSSPSSWTAADRDHYEVGPVMTNLSLCALALSCILF
LRYYILQTTDGAHNLAAKTPPKYPHQAFVVDWPHSFRDIHLMEKDQACLR
AGHGYVHLLHMREAGGTSLLEVLLEKDGDSSITENRPPLKLFHSEGLTFN
ISCFTEGGSMVHITSLRNPIDRLVSSYWREGRYATYPGIAEGEAAGETEA
GHQSAIEKHVEIFRSQYLQEPVHFKAYVQGLQEQYMQDTELLRTNQVWEG
VDNFYVKTLTNRYRPNTTAPVDEEDLALAKRILDNIDVLLITEWMDSEDE
SYKEEGKGQLELANYILGVDVAAFPRAHDKTLSLQQPLREIDSDTVAYLE
DLNKYDMELYKYAQELLQSRIAGLRALQRQQAGAGGKLQAPLSPDMDTCR
EMPAEGVVLSDVQLYTLSVPVCMLPHRDLVE*
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mRNA from alignment at chr9:652503..654163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02130.1 ID=NO09G02130.1|Name=NO09G02130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1661bp|location=Sequence derived from alignment at chr9:652503..654163- (Nannochloropsis oceanica)
AAACAAGTATCAGAGACCCAGCACCCGCTGCATCCAGCCATGTCTTCGAC
CAGGCGACGCAGAGATCCTTTCTACCCCGCATCGTCATCGCCTTCGTCAT
GGACTGCGGCAGACAGAGACCACTATGAAGTCGGACCCGTCATGACCAAT
CTCTCGCTGTGCGCCCTCGCTTTATCCTGTATTCTGTTTCTGAGATATTA
TATCCTCCAGACGACTGATGGCGCACACAATCTTGCTGCCAAGACCCCCC
CGAAGTACCCTCATCAGGCATTTGTCGTGGATTGGCCACACAGCTTTCGT
GACATTCATCTCATGGAAAAGGACCAGGCATGCCTGCGGGCCGGTCATGG
TTACGTGCATTTACTGCACATGCGTGAGGCAGGCGGTACAAGTTTGCTAG
AGGTCCTGCTGGAGAAAGACGGGGACAGCAGCATTACAGAGAATCGTCCG
CCGCTCAAGCTTTTTCACAGTACGTTGTCGGGAAGGGTGGTGCAGAAAGA
AGCCAATGTGTAAATGAAAGATGGGGATGCTCAATATCTCCCGCGCCTAT
TTTACCGACGCCATCTTTCATCCTTCCCTCCCTCTTTTTGATTCCCCCTA
CCCCATTACCCCTTTGTATTCAGGTGAGGGCCTGACCTTCAACATCAGCT
GCTTCACGGAAGGCGGGAGCATGGTCCACATCACCAGCCTCCGCAACCCC
ATCGACCGCTTGGTCAGCAGTTATTGGCGAGAAGGTCGCTATGCTACTTA
TCCCGGCATAGCTGAGGGGGAAGCTGCAGGAGAGACAGAGGCTGGCCATC
AAAGCGCCATCGAAAAACACGTCGAAATATTCCGCTCTCAGTACCTTCAA
GAGCCCGTCCACTTCAAAGCATATGTTCAAGGGCTCCAAGAACAGTACAT
GCAGGATACCGAGTTGTTGCGTACCAATCAAGTGTGGGAAGGCGTCGATA
ATTTCTATGTGAAAACACTCACGAATCGATATCGGCCCAACACAACCGCG
CCAGTCGACGAAGAAGACTTAGCACTAGCCAAGCGCATTTTGGACAACAT
AGACGTCCTTTTGATAACGGAATGGATGGATTCGGAAGATGAATCATACA
AGGAGGAAGGCAAAGGGCAATTGGAATTGGCTAACTACATCTTGGGCGTC
GACGTGGCGGCTTTCCCTCGTGCGCACGATAAGACCTTGTCACTGCAGCA
ACCTCTACGGGAGATTGATAGTGATACCGTCGCCTATCTCGAGGACCTCA
ACAAGTATGACATGGAGCTCTACAAATACGCACAAGAACTGCTCCAAAGT
CGCATTGCAGGCCTTCGTGCCTTGCAGCGGCAGCAGGCTGGAGCCGGAGG
GAAGTTGCAGGCGCCTTTGTCACCCGACATGGACACGTGCCGCGAGATGC
CGGCCGAGGGTGTGGTGTTGTCAGATGTACAGCTGTACACATTGTCAGTG
CCCGTGTGTATGCTACCACACCGAGATTTGGTAGAGTAGTGGTGGAGAAG
GAGGGAGAGTACAGGAGTAGGAGGGAGGAAAATAGGGATGTGGCTTTGCT
TTGTGAAGTAAGGGCTTTAGTCGCCTTTTCTGTCCATTGACATTTTATAA
AAAGTGTAGAATAACGAAAACTGTATGTGATGAAGAAGAAACAGTTCAAT
GAAATGAGAAA
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Coding sequence (CDS) from alignment at chr9:652503..654163-

>NO09G02130.1 ID=NO09G02130.1|Name=NO09G02130.1|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr9:652503..654163- (Nannochloropsis oceanica)
ATGTCTTCGACCAGGCGACGCAGAGATCCTTTCTACCCCGCATCGTCATC
GCCTTCGTCATGGACTGCGGCAGACAGAGACCACTATGAAGTCGGACCCG
TCATGACCAATCTCTCGCTGTGCGCCCTCGCTTTATCCTGTATTCTGTTT
CTGAGATATTATATCCTCCAGACGACTGATGGCGCACACAATCTTGCTGC
CAAGACCCCCCCGAAGTACCCTCATCAGGCATTTGTCGTGGATTGGCCAC
ACAGCTTTCGTGACATTCATCTCATGGAAAAGGACCAGGCATGCCTGCGG
GCCGGTCATGGTTACGTGCATTTACTGCACATGCGTGAGGCAGGCGGTAC
AAGTTTGCTAGAGGTCCTGCTGGAGAAAGACGGGGACAGCAGCATTACAG
AGAATCGTCCGCCGCTCAAGCTTTTTCACAGTGAGGGCCTGACCTTCAAC
ATCAGCTGCTTCACGGAAGGCGGGAGCATGGTCCACATCACCAGCCTCCG
CAACCCCATCGACCGCTTGGTCAGCAGTTATTGGCGAGAAGGTCGCTATG
CTACTTATCCCGGCATAGCTGAGGGGGAAGCTGCAGGAGAGACAGAGGCT
GGCCATCAAAGCGCCATCGAAAAACACGTCGAAATATTCCGCTCTCAGTA
CCTTCAAGAGCCCGTCCACTTCAAAGCATATGTTCAAGGGCTCCAAGAAC
AGTACATGCAGGATACCGAGTTGTTGCGTACCAATCAAGTGTGGGAAGGC
GTCGATAATTTCTATGTGAAAACACTCACGAATCGATATCGGCCCAACAC
AACCGCGCCAGTCGACGAAGAAGACTTAGCACTAGCCAAGCGCATTTTGG
ACAACATAGACGTCCTTTTGATAACGGAATGGATGGATTCGGAAGATGAA
TCATACAAGGAGGAAGGCAAAGGGCAATTGGAATTGGCTAACTACATCTT
GGGCGTCGACGTGGCGGCTTTCCCTCGTGCGCACGATAAGACCTTGTCAC
TGCAGCAACCTCTACGGGAGATTGATAGTGATACCGTCGCCTATCTCGAG
GACCTCAACAAGTATGACATGGAGCTCTACAAATACGCACAAGAACTGCT
CCAAAGTCGCATTGCAGGCCTTCGTGCCTTGCAGCGGCAGCAGGCTGGAG
CCGGAGGGAAGTTGCAGGCGCCTTTGTCACCCGACATGGACACGTGCCGC
GAGATGCCGGCCGAGGGTGTGGTGTTGTCAGATGTACAGCTGTACACATT
GTCAGTGCCCGTGTGTATGCTACCACACCGAGATTTGGTAGAGTAG
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Synonyms
Publications