NO09G00120.3, NO09G00120.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G00120.3
Unique Name	NO09G00120.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2901
Alignment location	chr9:74455..77821 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:74455..77821 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO09G00120.3 vs.
Match: EWM27799.1 (uv excision repair protein rad23 [Nannochloropsis gaditana])

HSP 1 Score: 232.3 bits (591), Expect = 1.800e-57
Identity = 146/240 (60.83%), Postives = 166/240 (69.17%), Query Frame = 0

Query:   22 PAPAPAPAPAPAPAPAPASTSIPPPNPMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSSSSLPSSASAGLDLMPAVGEGGRGGGEEGEESMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAALEGGGEEGEFEEEEDEDVEGEGGEGGGVGILGELTEQDEQAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLLGG 262
            PAP+P+ APAPAP P     S PP NP VEQLKEMGFPESQV AALRAA  D ++A+EFLFSGNIP+SP+  S+L S+     D   A            EE      +   VAQ LSHPEME IRR+VRENPS MES + ALAV+HPD VR+INEDP SFWAAL    EE E   EEDE  E E  E G +G L EL+E DE A+ RLMEMGFGREQVVEAY+L+GK+EN AVNLLLGG
Sbjct:  111 PAPSPS-APAPAPPPPSLPPSQPPSNPHVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERA-----------AEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAAL----EENEEGMEEDEGEEEE--EAGVLGAL-ELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLGG 331

The following BLAST results are available for this feature:

BLAST of NO09G00120.3 vs.

BLAST of NO09G00120.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27799.1	1.800e-57	60.83	uv excision repair protein rad23 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G00120	NO09G00120	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00120.3	NO09G00120.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G00120.3.cds1	NO09G00120.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G00120.3.cds2	NO09G00120.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:74455..77821+
coding sequence from alignment at chr9:74455..77821+

mRNA sequence

>NO09G00120.3 ID=NO09G00120.3|Name=NO09G00120.3|organism=Nannochloropsis oceanica|type=mRNA|length=2901bp
CTTGACACGTAATATTTTTTTTAGCTCGCCCTTGCCCTTACCCTAAGCCC
TTTGTATCGGTTCCTCTGAACTCGTGCAACCTCCTGTATTATTTCTGTCT
CTTCCATACTTTTCTCGCCACACTTCAAGTGTGATGTGCTTCTGTACACC
CTCACTCTTCTTCCCCTACTCAAATAAATCCTATATATGTACCCTCACCC
TGTCGCTTTCCTATATCCTTCTTCTCCCCCTCTTATTTTTCCTAACTCCC
CCGATACGTGGAGTACGCATACGGGTTGATTAATAAGGGCACATGATAAT
GTTCTTCAGGCCTCTCCACCTCAAATACAATTGTCACCTCGGGGTAAAAA
GCCTTGGTGTTGCTCGCACGGAAATACGCGGCCACGTCGAAGGTGATGCG
ATACACACCCGACTGCAAGACATGGCTGGTGGGTAATAAAGTCTCCACCC
GCCCATCAGCGTTTGTGTGACCATGCCCTAGCACAACCCATTGAGAGGAA
GCGGTGTCTCCTTGTCCTGCTTTTTTTTGCTCGAGGTGCAAGGCGACGCC
TTGGGCGGGTTTGCCAAGGGTGGTGTCAAGGATGTGGGAGGTAATTGGGC
AACGCTTTTTGGGGGCAGTGCTCATAGTTGCTGTAGTACTGGTAGTAACA
GACGAAGAAGAAGGAGAAAGGTGTGCGGCGAGAGAGGCGAGGCGTGCAGT
GGCGGGCGAGGTGGATGAGGCTGACATGCACTGTTCGCCTGTGGAGGGAA
GAGATAAGACAAGGATGACAATGCGGTTAGCCGGTACATTTGAGGACGAG
GGCCAGAGCTTCACCACCACGACGTAGAAGAAAGGATGCCGTGGCAATAG
GGTTGGAAGAATGCGGCGGCGGTGAAATGTCTTGCGTGGTGGGTCGGGAG
GAGTGTCGAGATCGATACCCAAATGTCTACTTGGTGTGCGGGAGACAGGG
GAAGTCGGCTATCCACAGGAACAGAGGCAGCAATGTAAATTTCTATGCTT
GAGCTGGCACGCTGTATTAGCTCTGTATATCATCATGAGGTTGTGGGAAG
GTTATGGCGCACAGGCCGTCGTCTCTTAAGGGGGTACGTAAGGGTGCTAG
AGGTGGATCTGAAGTCGTTGGACAAGCTGTGATCACTCAAGCGGATTCCT
TCTCGAATGGTGGACAGCGCTCATAAATCCCACCACCCCCAAGTCCTAGT
CACCTTCACTACGATCACAGCGATAGGGAGCAGACGCAGAAGAAGAAGAG
AAGTTAATAATCTGATTAATGGGGCGGACGGAAGTGGGCGAAAAGTAGCC
CATTTCTAGAGTCCCCGGCATTACCACAACCCCTGCCTCCTTGTGTATCA
CGCACCCCTACCTTATGTCTCAATTTTTCCAAAACCCTTGCATGATACCG
GTCCCGTTCTTCGGTTGGGGGTGTCTGCTCGTCCGGCCCTAGTCTACTTA
AACCTCATGCCTTCCCACCCACAACAGCGCCGCACATCATGGTGCTGATC
AAATTCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGATGGCGTCCAACT
CACACAGACGGTACGTTGCCTGTGTTTGCTGGTCCTTCTTCCCTCCCTTT
CTCGCTCCCTCCGTCCCTAGAAGACAATGCTCTTCGGTTTATGGTAAGTA
CGGGCTCCCTTCTGCGTTTCCAGCAAAGTCTCCGACCGCTCTTCCATCTT
ATTACAAGAAATTCCGCCATTTTTTTTTCGCATTTCTTCTCTATTTTCTG
CAGCTCCATGTCAAGAATGAAGCATAGTCCGTCCTGACATATGCCCTTTT
CTGCACCCCTCTTTCTCGTTCTCCCTTCCTTCCTCCTCCTTCCTTTATTC
TCGACAGGTCAACGAGTTGAAGGCCGCAGTAGAAGCGGCACCACCAGCAG
GAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATCCACCAGGGTAAAGAA
TTGGTGGAAGGCACAAACACCCTTTCCTCTTACCACGTTTGCGAGAACGA
CCTTATCATCGTCATGCTCTCGCGTCCGAAGCCCGTCTCTTCCTCCATCC
CTCCCTCCACCTCTTCCACTCCCGCTCCAGCTCCTGCTCCTGCTCCCGCT
CCTGCTCCCGCTCCTGCTCCTGCTCCTGCCTCCACCTCCATCCCTCCTCC
CAACCCGATGGTCGAACAACTGAAAGAGATGGGCTTCCCCGAGTCTCAAG
TGGTGGCAGCTCTTCGCGCGGCCAACCAAGACCTCAATGTCGCAATCGAG
TTCCTCTTCAGCGGCAACATCCCAGCCTCCCCCTCTTCCTCGTCCTCCCT
CCCTTCCTCGGCCTCGGCGGGCTTGGACTTGATGCCAGCGGTGGGAGAGG
GAGGGAGGGGAGGAGGAGAGGAGGGCGAGGAAAGCATGAGGGGCCAAGCC
GACCATATGACAGTGGCGCAATTTTTGAGCCACCCTGAGATGGAGAATAT
CCGACGCATCGTCCGCGAGAACCCGAGTAGTATGGAAAGTGCCATTGGCG
CCCTCGCTGTCAGCCATCCAGACTTTGTGCGCTTGATTAACGAAGATCCG
ACAAGCTTTTGGGCCGCACTGGAGGGCGGAGGCGAGGAGGGCGAGTTCGA
GGAAGAGGAGGACGAGGACGTGGAAGGAGAGGGAGGGGAGGGGGGAGGGG
TGGGGATACTAGGAGAGTTGACGGAGCAAGATGAGCAGGCAGTGGTGCGC
TTAATGGAGATGGGGTTTGGGAGGGAGCAGGTTGTGGAGGCGTATTTATT
GGCGGGGAAGGATGAAAATGGGGCAGTTAATTTGCTGTTGGGTGGGTGAG
AGAATGGAAGAATTGGATGGATAGGAGAACGATAAGACGTAGCAGAGTAT
GAATGGGCGAGAGCTCTGAAAGAATGAAGAATATGTAGGCAAAGACGATG
A

protein sequence of NO09G00120.3

>NO09G00120.3-protein ID=NO09G00120.3-protein|Name=NO09G00120.3|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MLSRPKPVSSSIPPSTSSTPAPAPAPAPAPAPAPAPAPASTSIPPPNPMV
EQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSSSSLPSSA
SAGLDLMPAVGEGGRGGGEEGEESMRGQADHMTVAQFLSHPEMENIRRIV
RENPSSMESAIGALAVSHPDFVRLINEDPTSFWAALEGGGEEGEFEEEED
EDVEGEGGEGGGVGILGELTEQDEQAVVRLMEMGFGREQVVEAYLLAGKD
ENGAVNLLLGG*

mRNA from alignment at chr9:74455..77821+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G00120.3 ID=NO09G00120.3|Name=NO09G00120.3|organism=Nannochloropsis oceanica|type=mRNA|length=3367bp|location=Sequence derived from alignment at chr9:74455..77821+ (Nannochloropsis oceanica)
CTTGACACGTAATATTTTTTTTAGCTCGCCCTTGCCCTTACCCTAAGCCC
TTTGTATCGGTTCCTCTGAACTCGTGCAACCTCCTGTATTATTTCTGTCT
CTTCCATACTTTTCTCGCCACACTTCAAGTGTGATGTGCTTCTGTACACC
CTCACTCTTCTTCCCCTACTCAAATAAATCCTATATATGTACCCTCACCC
TGTCGCTTTCCTATATCCTTCTTCTCCCCCTCTTATTTTTCCTAACTCCC
CCGATACGTGGAGTACGCATACGGGTTGATTAATAAGGGCACATGATAAT
GTTCTTCAGGCCTCTCCACCTCAAATACAATTGTCACCTCGGGGTAAAAA
GCCTTGGTGTTGCTCGCACGGAAATACGCGGCCACGTCGAAGGTGATGCG
ATACACACCCGACTGCAAGACATGGCTGGTGGGTAATAAAGTCTCCACCC
GCCCATCAGCGTTTGTGTGACCATGCCCTAGCACAACCCATTGAGAGGAA
GCGGTGTCTCCTTGTCCTGCTTTTTTTTGCTCGAGGTGCAAGGCGACGCC
TTGGGCGGGTTTGCCAAGGGTGGTGTCAAGGATGTGGGAGGTAATTGGGC
AACGCTTTTTGGGGGCAGTGCTCATAGTTGCTGTAGTACTGGTAGTAACA
GACGAAGAAGAAGGAGAAAGGTGTGCGGCGAGAGAGGCGAGGCGTGCAGT
GGCGGGCGAGGTGGATGAGGCTGACATGCACTGTTCGCCTGTGGAGGGAA
GAGATAAGACAAGGATGACAATGCGGTTAGCCGGTACATTTGAGGACGAG
GGCCAGAGCTTCACCACCACGACGTAGAAGAAAGGATGCCGTGGCAATAG
GGTTGGAAGAATGCGGCGGCGGTGAAATGTCTTGCGTGGTGGGTCGGGAG
GAGTGTCGAGATCGATACCCAAATGTCTACTTGGTGTGCGGGAGACAGGG
GAAGTCGGCTATCCACAGGAACAGAGGCAGCAATGTAAATTTCTATGCTT
GAGCTGGCACGCTGTATTAGCTCTGTATATCATCATGAGGTTGTGGGAAG
GTTATGGCGCACAGGCCGTCGTCTCTTAAGGGGGTACGTAAGGGTGCTAG
AGGTGGATCTGAAGTCGTTGGACAAGCTGTGATCACTCAAGCGGATTCCT
TCTCGAATGGTGGACAGCGCTCATAAATCCCACCACCCCCAAGTCCTAGT
CACCTTCACTACGATCACAGCGATAGGGAGCAGACGCAGAAGAAGAAGAG
AAGTTAATAATCTGATTAATGGGGCGGACGGAAGTGGGCGAAAAGTAGCC
CATTTCTAGAGTCCCCGGCATTACCACAACCCCTGCCTCCTTGTGTATCA
CGCACCCCTACCTTATGTCTCAATTTTTCCAAAACCCTTGCATGATACCG
GTCCCGTTCTTCGGTTGGGGGTGTCTGCTCGTCCGGCCCTAGTCTACTTA
AACCTCATGCCTTCCCACCCACAACAGCGCCGCACATCATGGTGCTGATC
AAATTCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGATGGCGTCCAACT
CACACAGACGGTACGTTGCCTGTGTTTGCTGGTCCTTCTTCCCTCCCTTT
CTCGCTCCCTCCGTCCCTAGAAGACAATGCTCTTCGGTTTATGGTAAGTA
CGGGCTCCCTTCTGCGTTTCCAGCAAAGTCTCCGACCGCTCTTCCATCTT
ATTACAAGAAATTCCGCCATTTTTTTTTCGCATTTCTTCTCTATTTTCTG
CAGCTCCATGTCAAGAATGAAGCATAGTCCGTCCTGACATATGCCCTTTT
CTGCACCCCTCTTTCTCGTTCTCCCTTCCTTCCTCCTCCTTCCTTTATTC
TCGACAGGTCAACGAGTTGAAGGCCGCAGTAGAAGCGGCACCACCAGCAG
GAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATCCACCAGGGTAAGTCC
ATTTTAATTTAAAGAATCATACATGTATTAATTTATTATTATAATTCTTT
TTCGTTCAATATTTTTTCTTCATATATAGCTACATCATGATATGGAAATA
TATAGAGTTCCTCTCTCATTTCGACTCAAACCACCTATATGCTTCTCTCC
TTTTCTTCCCGCGGGGCTAGCTACATGCAAAGTGCTCACCCATTCTCCCT
TCCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTCTCCCTCCCTTCCTCTCTATAGGTAAAGAATTGGT
GGAAGGCACAAACACCCTTTCCTCTTACCACGTTTGCGAGAACGACCTTA
TCATCGTCATGCTCTCGCGTCCGAAGCCCGTCTCTTCCTCCATCCCTCCC
TCCACCTCTTCCACTCCCGCTCCAGCTCCTGCTCCTGCTCCCGCTCCTGC
TCCCGCTCCTGCTCCTGCTCCTGCCTCCACCTCCATCCCTCCTCCCAACC
CGATGGTCGAACAACTGAAAGAGATGGGCTTCCCCGAGTCTCAAGTGGTG
GCAGCTCTTCGCGCGGCCAACCAAGACCTCAATGTCGCAATCGAGTTCCT
CTTCAGCGGCAACATCCCAGCCTCCCCCTCTTCCTCGTCCTCCCTCCCTT
CCTCGGCCTCGGCGGGCTTGGACTTGATGCCAGCGGTGGGAGAGGGAGGG
AGGGGAGGAGGAGAGGAGGGCGAGGAAAGCATGAGGGGCCAAGCCGACCA
TATGACAGTGGCGCAATTTTTGAGCCACCCTGAGATGGAGAATGTGAGTG
CGGAGGAAGGGAGATGTTTACGGTGTAGATTACCTGTGTATAATGCTCTG
CATGCATAGCGGACGTGGGCTGCTGCATTGTACTCTCGATAACCTCAATG
ACATCTCTCATCTTCGCCCTCTTTCCCTCGCTCCCCTTTCTTTCCCCACT
CCCCCTTTTCCCAGATCCGACGCATCGTCCGCGAGAACCCGAGTAGTATG
GAAAGTGCCATTGGCGCCCTCGCTGTCAGCCATCCAGACTTTGTGCGCTT
GATTAACGAAGATCCGACAAGCTTTTGGGCCGCACTGGAGGGCGGAGGCG
AGGAGGGCGAGTTCGAGGAAGAGGAGGACGAGGACGTGGAAGGAGAGGGA
GGGGAGGGGGGAGGGGTGGGGATACTAGGAGAGTTGACGGAGCAAGATGA
GCAGGCAGTGGTGCGCTTAATGGAGATGGGGTTTGGGAGGGAGCAGGTTG
TGGAGGCGTATTTATTGGCGGGGAAGGATGAAAATGGGGCAGTTAATTTG
CTGTTGGGTGGGTGAGAGAATGGAAGAATTGGATGGATAGGAGAACGATA
AGACGTAGCAGAGTATGAATGGGCGAGAGCTCTGAAAGAATGAAGAATAT
GTAGGCAAAGACGATGA

Coding sequence (CDS) from alignment at chr9:74455..77821+

>NO09G00120.3 ID=NO09G00120.3|Name=NO09G00120.3|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr9:74455..77821+ (Nannochloropsis oceanica)
ATGCTCTCGCGTCCGAAGCCCGTCTCTTCCTCCATCCCTCCCTCCACCTC
TTCCACTCCCGCTCCAGCTCCTGCTCCTGCTCCCGCTCCTGCTCCCGCTC
CTGCTCCTGCTCCTGCCTCCACCTCCATCCCTCCTCCCAACCCGATGGTC
GAACAACTGAAAGAGATGGGCTTCCCCGAGTCTCAAGTGGTGGCAGCTCT
TCGCGCGGCCAACCAAGACCTCAATGTCGCAATCGAGTTCCTCTTCAGCG
GCAACATCCCAGCCTCCCCCTCTTCCTCGTCCTCCCTCCCTTCCTCGGCC
TCGGCGGGCTTGGACTTGATGCCAGCGGTGGGAGAGGGAGGGAGGGGAGG
AGGAGAGGAGGGCGAGGAAAGCATGAGGGGCCAAGCCGACCATATGACAG
TGGCGCAATTTTTGAGCCACCCTGAGATGGAGAATATCCGACGCATCGTC
CGCGAGAACCCGAGTAGTATGGAAAGTGCCATTGGCGCCCTCGCTGTCAG
CCATCCAGACTTTGTGCGCTTGATTAACGAAGATCCGACAAGCTTTTGGG
CCGCACTGGAGGGCGGAGGCGAGGAGGGCGAGTTCGAGGAAGAGGAGGAC
GAGGACGTGGAAGGAGAGGGAGGGGAGGGGGGAGGGGTGGGGATACTAGG
AGAGTTGACGGAGCAAGATGAGCAGGCAGTGGTGCGCTTAATGGAGATGG
GGTTTGGGAGGGAGCAGGTTGTGGAGGCGTATTTATTGGCGGGGAAGGAT
GAAAATGGGGCAGTTAATTTGCTGTTGGGTGGGTGA

Synonyms

Publications