NO09G00120.1, NO09G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G00120.1
Unique NameNO09G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2604
Alignment locationchr9:74455..77821 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:74455..77821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G00120.1 vs.
Match: EWM27799.1 (uv excision repair protein rad23 [Nannochloropsis gaditana])

HSP 1 Score: 344.0 bits (881), Expect = 5.400e-91
Identity = 203/337 (60.24%), Postives = 241/337 (71.51%), Query Frame = 0 
Query:    1 MVLIKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLIHQGKELVEGTNTLSSYHVCENDLIIVMLSRPKPVSSSIPPSTSSTPAPAPAPAPAPAPAPAPAPASTSIPPPNPMVEQLKEMGFPESQVVAALRAANQDLNVAIEFLFSGNIPASPSSSSSLPSSASAGLDLMPAVGEGGRGGGEEGEESMRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRLINEDPTSFWAALEGGGEEGEFEEEEDEDVEGEGGEGGGVGILGELTEQDEQAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLLGG 338
            MV IK KT+QG++FS+DGV+L+QT+N+LKAAVEA+PP+GE  PADRLKLIHQGKEL +G +TLS+Y++ +NDL+IVML+R KP            PAP+P+   APAPAP P     S PP NP VEQLKEMGFPESQV AALRAA  D ++A+EFLFSGNIP+SP+  S+L S+     D   A            EE      +   VAQ LSHPEME IRR+VRENPS MES + ALAV+HPD VR+INEDP SFWAAL    EE E   EEDE  E E  E G +G L EL+E DE A+ RLMEMGFGREQVVEAY+L+GK+EN AVNLLLGG
Sbjct:   28 MVSIKLKTIQGREFSVDGVELSQTINDLKAAVEASPPSGEVLPADRLKLIHQGKELTQGDSTLSAYNIADNDLVIVMLTRHKP------------PAPSPS---APAPAPPPPSLPPSQPPSNPHVEQLKEMGFPESQVTAALRAAQNDADLAVEFLFSGNIPSSPAPLSALESAVGVERDAERA-----------AEEEAGAGTNATVVAQLLSHPEMERIRRVVRENPSGMESMVAALAVTHPDLVRIINEDPASFWAAL----EENEEGMEEDEGEEEE--EAGVLGAL-ELSEADEAAIARLMEMGFGREQVVEAYILSGKEENAAVNLLLGG 331
The following BLAST results are available for this feature:
BLAST of NO09G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27799.15.400e-9160.24uv excision repair protein rad23 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00120NO09G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G00120.1NO09G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G00120.1.cds1NO09G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00120.1.cds2NO09G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00120.1.cds3NO09G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G00120.1.cds4NO09G00120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G00120.1 ID=NO09G00120.1|Name=NO09G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2604bp
CTTGACACGTAATATTTTTTTTAGCTCGCCCTTGCCCTTACCCTAAGCCC
TTTGTATCGGTTCCTCTGAACTCGTGCAACCTCCTGTATTATTTCTGTCT
CTTCCATACTTTTCTCGCCACACTTCAAGTGTGATGTGCTTCTGTACACC
CTCACTCTTCTTCCCCTACTCAAATAAATCCTATATATGTACCCTCACCC
TGTCGCTTTCCTATATCCTTCTTCTCCCCCTCTTATTTTTCCTAACTCCC
CCGATACGTGGAGTACGCATACGGGTTGATTAATAAGGGCACATGATAAT
GTTCTTCAGGCCTCTCCACCTCAAATACAATTGTCACCTCGGGGTAAAAA
GCCTTGGTGTTGCTCGCACGGAAATACGCGGCCACGTCGAAGGTGATGCG
ATACACACCCGACTGCAAGACATGGCTGGTGGGTAATAAAGTCTCCACCC
GCCCATCAGCGTTTGTGTGACCATGCCCTAGCACAACCCATTGAGAGGAA
GCGGTGTCTCCTTGTCCTGCTTTTTTTTGCTCGAGGTGCAAGGCGACGCC
TTGGGCGGGTTTGCCAAGGGTGGTGTCAAGGATGTGGGAGGTAATTGGGC
AACGCTTTTTGGGGGCAGTGCTCATAGTTGCTGTAGTACTGGTAGTAACA
GACGAAGAAGAAGGAGAAAGGTGTGCGGCGAGAGAGGCGAGGCGTGCAGT
GGCGGGCGAGGTGGATGAGGCTGACATGCACTGTTCGCCTGTGGAGGGAA
GAGATAAGACAAGGATGACAATGCGGTTAGCCGGTACATTTGAGGACGAG
GGCCAGAGCTTCACCACCACGACGTAGAAGAAAGGATGCCGTGGCAATAG
GGTTGGAAGAATGCGGCGGCGGTGAAATGTCTTGCGTGGTGGGTCGGGAG
GAGTGTCGAGATCGATACCCAAATGTCTACTTGGTGTGCGGGAGACAGGG
GAAGTCGGCTATCCACAGGAACAGAGGCAGCAATGTAAATTTCTATGCTT
GAGCTGGCACGCTGTATTAGCTCTGTATATCATCATGAGGTTGTGGGAAG
GTTATGGCGCACAGGCCGTCGTCTCTTAAGGGGGTACGTAAGGGTGCTAG
AGGTGGATCTGAAGTCGTTGGACAAGCTGTGATCACTCAAGCGGATTCCT
TCTCGAATGGTGGACAGCGCTCATAAATCCCACCACCCCCAAGTCCTAGT
CACCTTCACTACGATCACAGCGATAGGGAGCAGACGCAGAAGAAGAAGAG
AAGTTAATAATCTGATTAATGGGGCGGACGGAAGTGGGCGAAAAGTAGCC
CATTTCTAGAGTCCCCGGCATTACCACAACCCCTGCCTCCTTGTGTATCA
CGCACCCCTACCTTATGTCTCAATTTTTCCAAAACCCTTGCATGATACCG
GTCCCGTTCTTCGGTTGGGGGTGTCTGCTCGTCCGGCCCTAGTCTACTTA
AACCTCATGCCTTCCCACCCACAACAGCGCCGCACATCATGGTGCTGATC
AAATTCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGATGGCGTCCAACT
CACACAGACGGTCAACGAGTTGAAGGCCGCAGTAGAAGCGGCACCACCAG
CAGGAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATCCACCAGGGTAAA
GAATTGGTGGAAGGCACAAACACCCTTTCCTCTTACCACGTTTGCGAGAA
CGACCTTATCATCGTCATGCTCTCGCGTCCGAAGCCCGTCTCTTCCTCCA
TCCCTCCCTCCACCTCTTCCACTCCCGCTCCAGCTCCTGCTCCTGCTCCC
GCTCCTGCTCCCGCTCCTGCTCCTGCTCCTGCCTCCACCTCCATCCCTCC
TCCCAACCCGATGGTCGAACAACTGAAAGAGATGGGCTTCCCCGAGTCTC
AAGTGGTGGCAGCTCTTCGCGCGGCCAACCAAGACCTCAATGTCGCAATC
GAGTTCCTCTTCAGCGGCAACATCCCAGCCTCCCCCTCTTCCTCGTCCTC
CCTCCCTTCCTCGGCCTCGGCGGGCTTGGACTTGATGCCAGCGGTGGGAG
AGGGAGGGAGGGGAGGAGGAGAGGAGGGCGAGGAAAGCATGAGGGGCCAA
GCCGACCATATGACAGTGGCGCAATTTTTGAGCCACCCTGAGATGGAGAA
TATCCGACGCATCGTCCGCGAGAACCCGAGTAGTATGGAAAGTGCCATTG
GCGCCCTCGCTGTCAGCCATCCAGACTTTGTGCGCTTGATTAACGAAGAT
CCGACAAGCTTTTGGGCCGCACTGGAGGGCGGAGGCGAGGAGGGCGAGTT
CGAGGAAGAGGAGGACGAGGACGTGGAAGGAGAGGGAGGGGAGGGGGGAG
GGGTGGGGATACTAGGAGAGTTGACGGAGCAAGATGAGCAGGCAGTGGTG
CGCTTAATGGAGATGGGGTTTGGGAGGGAGCAGGTTGTGGAGGCGTATTT
ATTGGCGGGGAAGGATGAAAATGGGGCAGTTAATTTGCTGTTGGGTGGGT
GAGAGAATGGAAGAATTGGATGGATAGGAGAACGATAAGACGTAGCAGAG
TATGAATGGGCGAGAGCTCTGAAAGAATGAAGAATATGTAGGCAAAGACG
ATGA
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protein sequence of NO09G00120.1

>NO09G00120.1-protein ID=NO09G00120.1-protein|Name=NO09G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MVLIKFKTLQGKDFSLDGVQLTQTVNELKAAVEAAPPAGETFPADRLKLI
HQGKELVEGTNTLSSYHVCENDLIIVMLSRPKPVSSSIPPSTSSTPAPAP
APAPAPAPAPAPAPASTSIPPPNPMVEQLKEMGFPESQVVAALRAANQDL
NVAIEFLFSGNIPASPSSSSSLPSSASAGLDLMPAVGEGGRGGGEEGEES
MRGQADHMTVAQFLSHPEMENIRRIVRENPSSMESAIGALAVSHPDFVRL
INEDPTSFWAALEGGGEEGEFEEEEDEDVEGEGGEGGGVGILGELTEQDE
QAVVRLMEMGFGREQVVEAYLLAGKDENGAVNLLLGG*
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mRNA from alignment at chr9:74455..77821+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G00120.1 ID=NO09G00120.1|Name=NO09G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=3367bp|location=Sequence derived from alignment at chr9:74455..77821+ (Nannochloropsis oceanica)
CTTGACACGTAATATTTTTTTTAGCTCGCCCTTGCCCTTACCCTAAGCCC
TTTGTATCGGTTCCTCTGAACTCGTGCAACCTCCTGTATTATTTCTGTCT
CTTCCATACTTTTCTCGCCACACTTCAAGTGTGATGTGCTTCTGTACACC
CTCACTCTTCTTCCCCTACTCAAATAAATCCTATATATGTACCCTCACCC
TGTCGCTTTCCTATATCCTTCTTCTCCCCCTCTTATTTTTCCTAACTCCC
CCGATACGTGGAGTACGCATACGGGTTGATTAATAAGGGCACATGATAAT
GTTCTTCAGGCCTCTCCACCTCAAATACAATTGTCACCTCGGGGTAAAAA
GCCTTGGTGTTGCTCGCACGGAAATACGCGGCCACGTCGAAGGTGATGCG
ATACACACCCGACTGCAAGACATGGCTGGTGGGTAATAAAGTCTCCACCC
GCCCATCAGCGTTTGTGTGACCATGCCCTAGCACAACCCATTGAGAGGAA
GCGGTGTCTCCTTGTCCTGCTTTTTTTTGCTCGAGGTGCAAGGCGACGCC
TTGGGCGGGTTTGCCAAGGGTGGTGTCAAGGATGTGGGAGGTAATTGGGC
AACGCTTTTTGGGGGCAGTGCTCATAGTTGCTGTAGTACTGGTAGTAACA
GACGAAGAAGAAGGAGAAAGGTGTGCGGCGAGAGAGGCGAGGCGTGCAGT
GGCGGGCGAGGTGGATGAGGCTGACATGCACTGTTCGCCTGTGGAGGGAA
GAGATAAGACAAGGATGACAATGCGGTTAGCCGGTACATTTGAGGACGAG
GGCCAGAGCTTCACCACCACGACGTAGAAGAAAGGATGCCGTGGCAATAG
GGTTGGAAGAATGCGGCGGCGGTGAAATGTCTTGCGTGGTGGGTCGGGAG
GAGTGTCGAGATCGATACCCAAATGTCTACTTGGTGTGCGGGAGACAGGG
GAAGTCGGCTATCCACAGGAACAGAGGCAGCAATGTAAATTTCTATGCTT
GAGCTGGCACGCTGTATTAGCTCTGTATATCATCATGAGGTTGTGGGAAG
GTTATGGCGCACAGGCCGTCGTCTCTTAAGGGGGTACGTAAGGGTGCTAG
AGGTGGATCTGAAGTCGTTGGACAAGCTGTGATCACTCAAGCGGATTCCT
TCTCGAATGGTGGACAGCGCTCATAAATCCCACCACCCCCAAGTCCTAGT
CACCTTCACTACGATCACAGCGATAGGGAGCAGACGCAGAAGAAGAAGAG
AAGTTAATAATCTGATTAATGGGGCGGACGGAAGTGGGCGAAAAGTAGCC
CATTTCTAGAGTCCCCGGCATTACCACAACCCCTGCCTCCTTGTGTATCA
CGCACCCCTACCTTATGTCTCAATTTTTCCAAAACCCTTGCATGATACCG
GTCCCGTTCTTCGGTTGGGGGTGTCTGCTCGTCCGGCCCTAGTCTACTTA
AACCTCATGCCTTCCCACCCACAACAGCGCCGCACATCATGGTGCTGATC
AAATTCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGATGGCGTCCAACT
CACACAGACGGTACGTTGCCTGTGTTTGCTGGTCCTTCTTCCCTCCCTTT
CTCGCTCCCTCCGTCCCTAGAAGACAATGCTCTTCGGTTTATGGTAAGTA
CGGGCTCCCTTCTGCGTTTCCAGCAAAGTCTCCGACCGCTCTTCCATCTT
ATTACAAGAAATTCCGCCATTTTTTTTTCGCATTTCTTCTCTATTTTCTG
CAGCTCCATGTCAAGAATGAAGCATAGTCCGTCCTGACATATGCCCTTTT
CTGCACCCCTCTTTCTCGTTCTCCCTTCCTTCCTCCTCCTTCCTTTATTC
TCGACAGGTCAACGAGTTGAAGGCCGCAGTAGAAGCGGCACCACCAGCAG
GAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATCCACCAGGGTAAGTCC
ATTTTAATTTAAAGAATCATACATGTATTAATTTATTATTATAATTCTTT
TTCGTTCAATATTTTTTCTTCATATATAGCTACATCATGATATGGAAATA
TATAGAGTTCCTCTCTCATTTCGACTCAAACCACCTATATGCTTCTCTCC
TTTTCTTCCCGCGGGGCTAGCTACATGCAAAGTGCTCACCCATTCTCCCT
TCCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTCTCCCTCCCTTCCTCTCTATAGGTAAAGAATTGGT
GGAAGGCACAAACACCCTTTCCTCTTACCACGTTTGCGAGAACGACCTTA
TCATCGTCATGCTCTCGCGTCCGAAGCCCGTCTCTTCCTCCATCCCTCCC
TCCACCTCTTCCACTCCCGCTCCAGCTCCTGCTCCTGCTCCCGCTCCTGC
TCCCGCTCCTGCTCCTGCTCCTGCCTCCACCTCCATCCCTCCTCCCAACC
CGATGGTCGAACAACTGAAAGAGATGGGCTTCCCCGAGTCTCAAGTGGTG
GCAGCTCTTCGCGCGGCCAACCAAGACCTCAATGTCGCAATCGAGTTCCT
CTTCAGCGGCAACATCCCAGCCTCCCCCTCTTCCTCGTCCTCCCTCCCTT
CCTCGGCCTCGGCGGGCTTGGACTTGATGCCAGCGGTGGGAGAGGGAGGG
AGGGGAGGAGGAGAGGAGGGCGAGGAAAGCATGAGGGGCCAAGCCGACCA
TATGACAGTGGCGCAATTTTTGAGCCACCCTGAGATGGAGAATGTGAGTG
CGGAGGAAGGGAGATGTTTACGGTGTAGATTACCTGTGTATAATGCTCTG
CATGCATAGCGGACGTGGGCTGCTGCATTGTACTCTCGATAACCTCAATG
ACATCTCTCATCTTCGCCCTCTTTCCCTCGCTCCCCTTTCTTTCCCCACT
CCCCCTTTTCCCAGATCCGACGCATCGTCCGCGAGAACCCGAGTAGTATG
GAAAGTGCCATTGGCGCCCTCGCTGTCAGCCATCCAGACTTTGTGCGCTT
GATTAACGAAGATCCGACAAGCTTTTGGGCCGCACTGGAGGGCGGAGGCG
AGGAGGGCGAGTTCGAGGAAGAGGAGGACGAGGACGTGGAAGGAGAGGGA
GGGGAGGGGGGAGGGGTGGGGATACTAGGAGAGTTGACGGAGCAAGATGA
GCAGGCAGTGGTGCGCTTAATGGAGATGGGGTTTGGGAGGGAGCAGGTTG
TGGAGGCGTATTTATTGGCGGGGAAGGATGAAAATGGGGCAGTTAATTTG
CTGTTGGGTGGGTGAGAGAATGGAAGAATTGGATGGATAGGAGAACGATA
AGACGTAGCAGAGTATGAATGGGCGAGAGCTCTGAAAGAATGAAGAATAT
GTAGGCAAAGACGATGA
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Coding sequence (CDS) from alignment at chr9:74455..77821+

>NO09G00120.1 ID=NO09G00120.1|Name=NO09G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr9:74455..77821+ (Nannochloropsis oceanica)
ATGGTGCTGATCAAATTCAAGACCCTCCAGGGTAAAGATTTCTCCTTGGA
TGGCGTCCAACTCACACAGACGGTCAACGAGTTGAAGGCCGCAGTAGAAG
CGGCACCACCAGCAGGAGAAACCTTTCCCGCCGACAGGCTTAAGCTCATC
CACCAGGGTAAAGAATTGGTGGAAGGCACAAACACCCTTTCCTCTTACCA
CGTTTGCGAGAACGACCTTATCATCGTCATGCTCTCGCGTCCGAAGCCCG
TCTCTTCCTCCATCCCTCCCTCCACCTCTTCCACTCCCGCTCCAGCTCCT
GCTCCTGCTCCCGCTCCTGCTCCCGCTCCTGCTCCTGCTCCTGCCTCCAC
CTCCATCCCTCCTCCCAACCCGATGGTCGAACAACTGAAAGAGATGGGCT
TCCCCGAGTCTCAAGTGGTGGCAGCTCTTCGCGCGGCCAACCAAGACCTC
AATGTCGCAATCGAGTTCCTCTTCAGCGGCAACATCCCAGCCTCCCCCTC
TTCCTCGTCCTCCCTCCCTTCCTCGGCCTCGGCGGGCTTGGACTTGATGC
CAGCGGTGGGAGAGGGAGGGAGGGGAGGAGGAGAGGAGGGCGAGGAAAGC
ATGAGGGGCCAAGCCGACCATATGACAGTGGCGCAATTTTTGAGCCACCC
TGAGATGGAGAATATCCGACGCATCGTCCGCGAGAACCCGAGTAGTATGG
AAAGTGCCATTGGCGCCCTCGCTGTCAGCCATCCAGACTTTGTGCGCTTG
ATTAACGAAGATCCGACAAGCTTTTGGGCCGCACTGGAGGGCGGAGGCGA
GGAGGGCGAGTTCGAGGAAGAGGAGGACGAGGACGTGGAAGGAGAGGGAG
GGGAGGGGGGAGGGGTGGGGATACTAGGAGAGTTGACGGAGCAAGATGAG
CAGGCAGTGGTGCGCTTAATGGAGATGGGGTTTGGGAGGGAGCAGGTTGT
GGAGGCGTATTTATTGGCGGGGAAGGATGAAAATGGGGCAGTTAATTTGC
TGTTGGGTGGGTGA
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Synonyms
Publications