NO08G04340.1, NO08G04340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04340.1
Unique NameNO08G04340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1063
Alignment locationchr8:1269176..1270518 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1269176..1270518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04340.1 vs.
Match: EWM26895.1 (nad h dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 434.1 bits (1115), Expect = 3.000e-118
Identity = 196/252 (77.78%), Postives = 223/252 (88.49%), Query Frame = 0 
Query:    1 MPRANKVLSLFLWDPFSRYIASVANRWTSLIPPPPRHPSDAPRRVLLIHAHPLGAASFNGACFTTAHHGLQEAGHEVKTLKLYEDKFQPLMQPSDIKEYFKPLAERDEADAPDKAALLRYVALLKWCDSLIFVYPTWWYAMPAILKGWIERTFLPHSTWTLPSPSSPPASVVGLVPCLENIKKVGVITTYGSTWGVIRYVGDPGRRIIARGLRPLFSRECTVLWLGLYNCDTATQKAREGFLAEVEAYMREF 253
            MPR NK LSLFLWDP SR++AS ANRWTS IPPPPRHPSD PRRVLL+HAHP+G +SFNGACF T H  LQEAGHEV+TL LYE+ FQP MQ SDI+EY KPL++R +   PDKAALLRY+ LLKWCD+LIFVYPTWWYAMPAILKGWI+RTFLPHS +TLP+P+SPPASVVGLVPCL+NIKKVGV+TTYGS++ VIRYVGDPGRRIIARGLRPLF  +CT+LWLG+Y+CDTA+Q  RE FLAEV +YMREF
Sbjct:    1 MPRGNKELSLFLWDPLSRFLASAANRWTSFIPPPPRHPSDPPRRVLLLHAHPMGTSSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEVNSYMREF 252
The following BLAST results are available for this feature:
BLAST of NO08G04340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26895.13.000e-11877.78nad h dehydrogenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04340NO08G04340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04340.1NO08G04340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04340.1.cds1NO08G04340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04340.1.cds2NO08G04340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04340.1 ID=NO08G04340.1|Name=NO08G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
TCCTTCTTTACTTTTCATCTCACGCCCACTCAACATCACAAGCACTACCT
TTCCTTGCAGTGTTGCTACGACACCACGTATAAGACTAAAAAGATGCTTG
GCATGTCATATATCGTGAAATTGTTGAATGAACGGAGTATTAAAGGCGCA
ACCATTGCACTCAACCTCCTCATCGGTTCACTCGCTCACAGTCTTTCCAA
CCCTCCCTCCCCTCTCTCTTTTCCTCCCATCTAGCGCAACCAATGCCCCG
CGCCAACAAGGTGCTCTCTCTTTTCCTTTGGGACCCTTTCTCAAGGTACA
TTGCCTCGGTCGCGAACCGCTGGACGTCCCTTATCCCTCCTCCGCCACGC
CACCCGTCCGATGCGCCGCGCCGTGTGCTCCTCATCCATGCGCACCCATT
GGGCGCTGCCTCTTTTAATGGAGCCTGTTTTACCACAGCTCATCATGGCC
TTCAAGAGGCAGGGCACGAAGTCAAAACCCTGAAGCTGTACGAGGATAAA
TTTCAGCCCCTGATGCAGCCAAGTGATATCAAGGAGTATTTCAAACCGTT
GGCTGAGAGGGACGAGGCAGACGCACCAGACAAGGCGGCCCTTCTCCGCT
ATGTGGCCCTTCTGAAGTGGTGTGATTCCTTGATCTTTGTCTATCCAACG
TGGTGGTATGCCATGCCCGCTATCTTGAAAGGCTGGATCGAGCGGACATT
CCTACCCCACAGCACGTGGACGCTTCCCTCCCCATCCTCCCCCCCGGCCT
CCGTCGTGGGGCTGGTCCCGTGTTTGGAGAATATCAAGAAAGTGGGCGTG
ATAACGACGTACGGGTCCACCTGGGGTGTGATTAGGTATGTGGGAGATCC
GGGTAGGAGGATTATTGCCCGGGGGCTTCGGCCTTTGTTCAGTAGGGAGT
GCACGGTGCTATGGCTGGGTCTGTACAACTGTGACACTGCCACGCAGAAG
GCAAGGGAGGGCTTCCTGGCGGAGGTGGAGGCATATATGCGGGAGTTTTG
AGGGAGGAGGGAGGGTGGAGGGGATGACGGGAGGAAGGAAAGACTCGACA
GGAAGGCAATATT
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protein sequence of NO08G04340.1

>NO08G04340.1-protein ID=NO08G04340.1-protein|Name=NO08G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MPRANKVLSLFLWDPFSRYIASVANRWTSLIPPPPRHPSDAPRRVLLIHA
HPLGAASFNGACFTTAHHGLQEAGHEVKTLKLYEDKFQPLMQPSDIKEYF
KPLAERDEADAPDKAALLRYVALLKWCDSLIFVYPTWWYAMPAILKGWIE
RTFLPHSTWTLPSPSSPPASVVGLVPCLENIKKVGVITTYGSTWGVIRYV
GDPGRRIIARGLRPLFSRECTVLWLGLYNCDTATQKAREGFLAEVEAYMR
EF*
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mRNA from alignment at chr8:1269176..1270518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04340.1 ID=NO08G04340.1|Name=NO08G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp|location=Sequence derived from alignment at chr8:1269176..1270518- (Nannochloropsis oceanica)
TCCTTCTTTACTTTTCATCTCACGCCCACTCAACATCACAAGCACTACCT
TTCCTTGCAGTGTTGCTACGACACCACGTATAAGACTAAAAAGATGCTTG
GCATGTCATATATCGTGAAATTGTTGAATGAACGGAGTATTAAAGGCGCA
ACCATTGCACTCAACCTCCTCATCGGTTCACTCGCTCACAGTCTTTCCAA
CCCTCCCTCCCCTCTCTCTTTTCCTCCCATCTAGCGCAACCAATGCCCCG
CGCCAACAAGGTGCTCTCTCTTTTCCTTTGGGACCCTTTCTCAAGGTACA
TTGCCTCGGTCGCGAACCGCTGGACGTCCCTTATCCCTCCTCCGCCACGC
CACCCGTCCGATGCGCCGCGCCGTGTGCTCCTCATCCATGCGCACCCATT
GGGCGCTGCCTCTTTTAATGGAGCCTGTTTTACCACAGCTCATCATGGCC
TTCAAGAGGCAGGGCACGAAGTCAAAACCCTGAAGCTGTACGAGGATAAA
TTTCAGCCCCTGATGCAGCCAAGTGATATCAAGGAGTATTTCAAACCGTT
GGCTGAGAGGGACGAGGCAGACGCACCAGACAAGGCGGCCCTTCTCCGCT
ATGTGGCCCTTCTGAAGTGGTGTGATTCCTTGATCTTTGTCTATCCAACG
TGGTGGTATGCCATGGTACGTTGAATAGATTGGCCCGAGGAGATGGAAAC
GGAGAGGAGGGGGGAAGAATGGTGGGGTGGAAGAAAGGACGGGACAGAGA
GCGGGCGTTTAGCCGTCAATGTACCGTTAAACGTCCTTTTCAAAGCTTAT
TGGTTGATATTGCTTGTATTTGCTTTTGTATGTCGCCACTTTCGTGTCAC
GCCCCTGCAGCAACGCCACCAGCTCTCTCCATTTCGCACCTCACTGTCCC
TCCTCCTCCTCCTCTCTCCTTCCCTCCCTCCACCCGACCCCACAGCCCGC
TATCTTGAAAGGCTGGATCGAGCGGACATTCCTACCCCACAGCACGTGGA
CGCTTCCCTCCCCATCCTCCCCCCCGGCCTCCGTCGTGGGGCTGGTCCCG
TGTTTGGAGAATATCAAGAAAGTGGGCGTGATAACGACGTACGGGTCCAC
CTGGGGTGTGATTAGGTATGTGGGAGATCCGGGTAGGAGGATTATTGCCC
GGGGGCTTCGGCCTTTGTTCAGTAGGGAGTGCACGGTGCTATGGCTGGGT
CTGTACAACTGTGACACTGCCACGCAGAAGGCAAGGGAGGGCTTCCTGGC
GGAGGTGGAGGCATATATGCGGGAGTTTTGAGGGAGGAGGGAGGGTGGAG
GGGATGACGGGAGGAAGGAAAGACTCGACAGGAAGGCAATATT
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Coding sequence (CDS) from alignment at chr8:1269176..1270518-

>NO08G04340.1 ID=NO08G04340.1|Name=NO08G04340.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr8:1269176..1270518- (Nannochloropsis oceanica)
ATGCCCCGCGCCAACAAGGTGCTCTCTCTTTTCCTTTGGGACCCTTTCTC
AAGGTACATTGCCTCGGTCGCGAACCGCTGGACGTCCCTTATCCCTCCTC
CGCCACGCCACCCGTCCGATGCGCCGCGCCGTGTGCTCCTCATCCATGCG
CACCCATTGGGCGCTGCCTCTTTTAATGGAGCCTGTTTTACCACAGCTCA
TCATGGCCTTCAAGAGGCAGGGCACGAAGTCAAAACCCTGAAGCTGTACG
AGGATAAATTTCAGCCCCTGATGCAGCCAAGTGATATCAAGGAGTATTTC
AAACCGTTGGCTGAGAGGGACGAGGCAGACGCACCAGACAAGGCGGCCCT
TCTCCGCTATGTGGCCCTTCTGAAGTGGTGTGATTCCTTGATCTTTGTCT
ATCCAACGTGGTGGTATGCCATGCCCGCTATCTTGAAAGGCTGGATCGAG
CGGACATTCCTACCCCACAGCACGTGGACGCTTCCCTCCCCATCCTCCCC
CCCGGCCTCCGTCGTGGGGCTGGTCCCGTGTTTGGAGAATATCAAGAAAG
TGGGCGTGATAACGACGTACGGGTCCACCTGGGGTGTGATTAGGTATGTG
GGAGATCCGGGTAGGAGGATTATTGCCCGGGGGCTTCGGCCTTTGTTCAG
TAGGGAGTGCACGGTGCTATGGCTGGGTCTGTACAACTGTGACACTGCCA
CGCAGAAGGCAAGGGAGGGCTTCCTGGCGGAGGTGGAGGCATATATGCGG
GAGTTTTGA
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Synonyms
Publications