NO08G04140.1, NO08G04140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G04140.1
Unique NameNO08G04140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2085
Alignment locationchr8:1191722..1194178 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:1191722..1194178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G04140.1 vs.
Match: WP_088890484.1 (family 2 glycosyl transferase [Leptolyngbya ohadii])

HSP 1 Score: 229.6 bits (584), Expect = 1.200e-56
Identity = 109/217 (50.23%), Postives = 151/217 (69.59%), Query Frame = 0 
Query:   43 VNELFTWFTDRQKGPGAHKWSTYLDAYHRHFNRFRTQAKITMVEVGVQSGGSIEMWRSYFGADKLNYIGIDINPECKQFEKDGVRIVIGNQGDPAFWEQFKKEIPDELDIFVDDGGHTMNQQIVTFDKMFWGVRDGGIYLCEDLHTSYWQEYEGGYLNNNSMIEKSKTLIDTINAWHSKEAG-LQVNSLTRNIRGLHFYDSMIFIDKRA-TEPMERM 258
            +N+L  +F    K    HKW+ Y + Y RHF+RFR    + ++E+GV  GGS++MWR+YFG      IG+DI+P CK+ E++G+ I+IG+Q D  F    + ++P  +DI +DDGGHTM QQI+TF+++F  V++ G+YLCEDLHTSYWQEY GGY N NS IE SK  ID INAWHS + G  +VN +TR+   LHFY S++ IDKR+   P++RM
Sbjct:    1 MNDLQLYFESNDKRL-IHKWTHYFEIYDRHFSRFRN-TDVCILEIGVYHGGSLQMWRNYFGP-YAKIIGVDIDPRCKELEEEGIEIIIGDQEDREFLASLRSKLPP-VDILIDDGGHTMRQQIITFEELFPLVKEDGVYLCEDLHTSYWQEYGGGYRNPNSFIEYSKAFIDQINAWHSCDPGSFRVNDVTRSAYCLHFYTSVLVIDKRSIAAPVDRM 213
The following BLAST results are available for this feature:
BLAST of NO08G04140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_088890484.11.200e-5650.23family 2 glycosyl transferase [Leptolyngbya ohadii... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G04140NO08G04140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G04140.1NO08G04140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G04140.1.cds1NO08G04140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04140.1.cds2NO08G04140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04140.1.cds3NO08G04140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G04140.1.cds4NO08G04140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G04140.1 ID=NO08G04140.1|Name=NO08G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp
TGTCTTTATGCCAGTAACAAGGCTCGTTATGGTAATTAAAACCACAAAAA
AGTAAAAAGAGCAAAAAACTTACATAACTTTCTGTATAGTCCGTGGAGTC
GTCCTTGATGTGAATCATGCACGACTGCGACTTATCGCATGATTATCTGT
GACCTCTGACGACTATTGTAATAATCAGTCGTACAGGCCATCTTCACCGA
CTTCAGTTGTCCTACTTGTGATCCACTTCTTAGCCGCTGACAACTATAAC
TAAATGTGTTTATGGTCGTTGTGACGACTTACTTATATTTTGTAGCAAGT
CGATGAAAATATGGATGATTCGATGACTCAATGGTGTTGTGAAAACAGAC
CATTGTCGGTGATTCAACCCCTCACGAGTTCATTATCATTTTGTTACACA
ACAAAAGCACATCTCTCTCACCATTGATAGAAGTACACATCCAAATCCTC
ACTATGCGTCTTTTACGGACAGACATAATAATATGCGGGGAAATATCACC
ATGCCAGATTGTAGTGCAACAAAGAAGCTTCTGTTAATTGCAATTCTGAC
GGCTGTAGTGGTCGTCTTCCTTTTTGAGCTGAACGGAACTCGGAGGCCTC
TAGACCATATTGCTTACTCTGAAATGCTCGCGCGGCAACGAAGCGCAAGG
TAAGGGACCGATACCTGTATACAGTACGAGGATACAAATGGCCAAAATGG
TTACAGATATTAATTTGAATTGTCCTTTATCTTGTCAGCATCCCTAGCAC
ACTAGAGATTCGTACAGCCATCGACGCACTAACCCATCAAGTGGAAAAGT
TCCAAGAACTGGAGGACAGGCTACAGGCGATGACTATCGATCTTCAAAAG
ACAGCCGATGAGCTGGCCACCTACAAAGTCAAGGCTGAACACCAAGACAA
ATTAGAGAATTTGGAGGATGTTACCCAGTCGCTTAGGATAGAAAACGAGC
CGGAAGTAAATGAGCTATTTACATGGTTTACGGATCGCCAAAAAGGTCCT
GGGGCACACAAGTGGTCCACATATCTTGATGCCTATCACCGACACTTCAA
CCGATTTCGTACACAAGCCAAAATAACAATGGTAGAGGTGGGAGTGCAAA
GCGGAGGATCTATCGAAATGTGGCGTTCGTACTTCGGGGCCGACAAGCTC
AACTATATAGGAATAGACATTAACCCCGAATGCAAACAGTTTGAAAAGGA
CGGAGTTCGCATTGTTATTGGTAATCAAGGGGACCCTGCGTTCTGGGAGC
AATTCAAAAAAGAAATCCCGGACGAGCTGGACATTTTTGTCGACGACGGA
GGACACACCATGAACCAGCAAATTGTAACATTTGATAAGATGTTTTGGGG
AGTTCGAGATGGTGGTATTTACCTATGCGAAGATTTGCACACGAGTTACT
GGCAGGAATATGAAGGTGGTTACCTCAACAACAATAGCATGATTGAGAAA
TCCAAAACACTCATCGATACCATCAATGCTTGGCATTCAAAAGAAGCGGG
TTTGCAGGTGAATAGTTTGACACGGAACATTCGAGGATTGCACTTCTATG
ATTCCATGATTTTCATTGACAAACGTGCAACGGAACCGATGGAAAGAATG
AAGTCCGGTGATTATTGGATTGACGTATGAGATGCGGCTGGAGATGAGAA
TACCTTGTCCCTCAAACAGGAACAGTGATTCAAGCCATGTTTGAGAAGCT
GTCAGTATACATGTTTCCGTAGCACATCAAACCAATGATTGCCTTTCCTA
TCTCTACATCCCAGAAGCTCGATCGACGCCGCGTAAATGATCTCTCCTCG
TCAATCGTTTCGCAATATTTATTTTTCATGTCTAGAAATGGCTACGCGTC
TGGGGCGGCAAATGCTCATTTTTCGAGGTCCGAGTGAGTTTACTTATATA
ATCTATGTCTTTCTTTATAATCATATTCTCGTCGATGGGCTTTTGATCCC
GCAATCGAGTTTCAATTACATTGACATAGTCGATGTGGACGCAATTCCAG
GGTGCAATCAACCCTAACGCAGCATCATCTCGGTCGAAAATGTCTCACCA
CAACTGAAGAAAATAAAGCTATGCTGTTATAAAAT
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protein sequence of NO08G04140.1

>NO08G04140.1-protein ID=NO08G04140.1-protein|Name=NO08G04140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MTIDLQKTADELATYKVKAEHQDKLENLEDVTQSLRIENEPEVNELFTWF
TDRQKGPGAHKWSTYLDAYHRHFNRFRTQAKITMVEVGVQSGGSIEMWRS
YFGADKLNYIGIDINPECKQFEKDGVRIVIGNQGDPAFWEQFKKEIPDEL
DIFVDDGGHTMNQQIVTFDKMFWGVRDGGIYLCEDLHTSYWQEYEGGYLN
NNSMIEKSKTLIDTINAWHSKEAGLQVNSLTRNIRGLHFYDSMIFIDKRA
TEPMERMKSGDYWIDV*
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mRNA from alignment at chr8:1191722..1194178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G04140.1 ID=NO08G04140.1|Name=NO08G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2457bp|location=Sequence derived from alignment at chr8:1191722..1194178+ (Nannochloropsis oceanica)
TGTCTTTATGCCAGTAACAAGGCTCGTTATGGTAATTAAAACCACAAAAA
AGTAAAAAGAGCAAAAAACTTACATAACTTTCTGTATAGTCCGTGGAGTC
GTCCTTGATGTGAATCATGCACGACTGCGACTTATCGCATGATTATCTGT
GACCTCTGACGACTATTGTAATAATCAGTCGTACAGGCCATCTTCACCGA
CTTCAGTTGTCCTACTTGTGATCCACTTCTTAGCCGCTGACAACTATAAC
TAAATGTGTTTATGGTCGTTGTGACGACTTACTTATATTTTGTAGCAAGT
CGATGAAAATATGGATGATTCGATGACTCAATGGTGTTGTGAAAACAGAC
CATTGTCGGTGATTCAACCCCTCACGAGTTCATTATCATTTTGTTACACA
ACAAAAGCACATCTCTCTCACCATTGATAGAAGTACACATCCAAATCCTC
ACTATGCGTCTTTTACGGACAGACATAATAATATGCGGGGAAATATCACC
ATGCCAGATTGTAGTGCAACAAAGAAGCTTCTGTTAATTGCAATTCTGAC
GGCTGTAGTGGTCGTCTTCCTTTTTGAGCTGAACGGAACTCGGAGGCCTC
TAGACCATATTGCTTACTCTGAAATGCTCGCGCGGCAACGAAGCGCAAGG
TAAGGGACCGATACCTGTATACAGTACGAGGATACAAATGGCCAAAATGG
TTACAGATATTAATTTGAATTGTCCTTTATCTTGTCAGCATCCCTAGCAC
ACTAGAGATTCGTACAGCCATCGACGCACTAACCCATCAAGTGGAAAAGT
TCCAAGAACTGGAGGACAGGCTACAGGCGATGACTATCGATCTTCAAAAG
ACAGCCGATGAGCTGGCCACCTACAAAGTCAAGGCTGAACACCAAGACAA
ATTAGAGAATTTGGAGGATGTTACCCAGTCGCTTAGGATAGAAAACGAGC
CGGAAGTAAATGAGCTATTTACATGGTTTACGGATCGCCAAAAAGGTCCT
GGGGCACACAAGTGGTCCACATATCTTGATGCCTATCACCGACACTTCAA
CCGATTTCGTACACAAGCCAAAATAACAATGGTAGAGGTGGGAGTGCAAA
GCGGAGGATCTATCGAAATGTGGCGTTCGTACTTCGGGGCCGACAAGCTC
AAGTAAGCACCTTTGATATAATTTAATTTAGACTTTCTCCCCGCTCAACC
TGCAAGTAACTCAATTCTCTTGTTACTTTTCTCAGCTATATAGGAATAGA
CATTAACCCCGAATGCAAACAGTTTGAAAAGGACGGAGTTCGCATTGTTA
TTGGTAATCAAGGGGACCCTGCGTTCTGGGAGCAATTCAAAAAAGAAATC
CCGGACGAGCTGGACATTTTTGTCGACGACGGAGGACACACCATGAACCA
GCAAATTGTAACATTTGATAAGATGTTTTGGGGAGTTCGAGATGGTGGTA
TTTACCTATGCGAAGATTTGCACACGAGTTACTGGCAGGAATATGAAGGT
GGTTACCTCAACAACAATAGCATGATTGAGAAATCCAAAACACTCATCGA
TACCATCAATGCTTGGCATTCAAAAGAAGCGGGTTTGCAGGTAAGGGGTT
AAATCGCTAACCATATTCTATTTTTTTCAAGTACCTTCTCTCGAGGATTC
GCGCAGAAAATGATCCGAAAATAAGCTGGGGACGAAAAATCCGTCCCCAA
AAAGTATCACCTTTTAGAAAATGAGATACTTGCAATACAATCACAAATTG
CATAAATGCTCACTTATACCTCACCGGAATTTCGACAGGTGAATAGTTTG
ACACGGAACATTCGAGGGTAAGTCATGGACCGAGACATGTAGGTTCGCGG
TGCAATAGAAACGATACGTATACTCAAGTCTACTACTCTCCTTACGTTAC
ACATATAGATTGCACTTCTATGATTCCATGATTTTCATTGACAAACGTGC
AACGGAACCGATGGAAAGAATGAAGTCCGGTGATTATTGGATTGACGTAT
GAGATGCGGCTGGAGATGAGAATACCTTGTCCCTCAAACAGGAACAGTGA
TTCAAGCCATGTTTGAGAAGCTGTCAGTATACATGTTTCCGTAGCACATC
AAACCAATGATTGCCTTTCCTATCTCTACATCCCAGAAGCTCGATCGACG
CCGCGTAAATGATCTCTCCTCGTCAATCGTTTCGCAATATTTATTTTTCA
TGTCTAGAAATGGCTACGCGTCTGGGGCGGCAAATGCTCATTTTTCGAGG
TCCGAGTGAGTTTACTTATATAATCTATGTCTTTCTTTATAATCATATTC
TCGTCGATGGGCTTTTGATCCCGCAATCGAGTTTCAATTACATTGACATA
GTCGATGTGGACGCAATTCCAGGGTGCAATCAACCCTAACGCAGCATCAT
CTCGGTCGAAAATGTCTCACCACAACTGAAGAAAATAAAGCTATGCTGTT
ATAAAAT
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Coding sequence (CDS) from alignment at chr8:1191722..1194178+

>NO08G04140.1 ID=NO08G04140.1|Name=NO08G04140.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr8:1191722..1194178+ (Nannochloropsis oceanica)
ATGACTATCGATCTTCAAAAGACAGCCGATGAGCTGGCCACCTACAAAGT
CAAGGCTGAACACCAAGACAAATTAGAGAATTTGGAGGATGTTACCCAGT
CGCTTAGGATAGAAAACGAGCCGGAAGTAAATGAGCTATTTACATGGTTT
ACGGATCGCCAAAAAGGTCCTGGGGCACACAAGTGGTCCACATATCTTGA
TGCCTATCACCGACACTTCAACCGATTTCGTACACAAGCCAAAATAACAA
TGGTAGAGGTGGGAGTGCAAAGCGGAGGATCTATCGAAATGTGGCGTTCG
TACTTCGGGGCCGACAAGCTCAACTATATAGGAATAGACATTAACCCCGA
ATGCAAACAGTTTGAAAAGGACGGAGTTCGCATTGTTATTGGTAATCAAG
GGGACCCTGCGTTCTGGGAGCAATTCAAAAAAGAAATCCCGGACGAGCTG
GACATTTTTGTCGACGACGGAGGACACACCATGAACCAGCAAATTGTAAC
ATTTGATAAGATGTTTTGGGGAGTTCGAGATGGTGGTATTTACCTATGCG
AAGATTTGCACACGAGTTACTGGCAGGAATATGAAGGTGGTTACCTCAAC
AACAATAGCATGATTGAGAAATCCAAAACACTCATCGATACCATCAATGC
TTGGCATTCAAAAGAAGCGGGTTTGCAGGTGAATAGTTTGACACGGAACA
TTCGAGGATTGCACTTCTATGATTCCATGATTTTCATTGACAAACGTGCA
ACGGAACCGATGGAAAGAATGAAGTCCGGTGATTATTGGATTGACGTATG
A
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Synonyms
Publications