NO08G03450.1, NO08G03450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G03450.1
Unique NameNO08G03450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1218
Alignment locationchr8:961848..963653 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:961848..963653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G03450.1 vs.
Match: EWM26784.1 (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 375.2 bits (962), Expect = 2.200e-100
Identity = 216/352 (61.36%), Postives = 246/352 (69.89%), Query Frame = 0 
Query:    1 MTRRRRGIGSSSWRPGYFSSIAVFSNLCLLGFLLSTILPSVAARRSRSSSSGVSTS---LTTTMASQQRSTALEVEAAAAAAAAAAAEASAPQLRPIAEGQLLHPFLALTT-----RGGASQSSSLMGRILRAWRGSAKNGGSIYGRMKRFLGALWNGKRSGASNCNTGGRSNIRSAGGAGRGAGGMGRKLGKSSRAEKHLGTEFRRGNANFRIQKELREWLANPMDNMHVAVGDNLRVWVVTLTGAKGTVFAGEKYKLKFTFPVDYPSKPPSVYFLQPTPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAKEKKIPQDNHVHADNPPGREQANWLYHDDKC 345
            M+RR   +  +  R G    I   SNL LL   L T         +RS S  +S++   L +  A + RS  L                     R     ++LHP L L T     RGGA QSSSL+GRI+RAWRGSAK GGSI+GR+KRFLG LWN   +G+S  +   RS IRS    G G G +G      +R +KHLG EFRRGNANFR+QKELREWLANP +N+ VAVGDN+RVWVVTLTGAKGT+FAGEKYKLKFTFP+DYPSKPPSVYFLQP PRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSA+EKKIPQDNHVHADNPPG+EQANWLYHDD+C
Sbjct:    1 MSRRASRVKRAGMRDG----IPSLSNLVLLWLFLFTAF-------TRSESHSISSNRCILKSNKAIRARSVLLR--------------------RKEETFRVLHPQLPLITLLAQKRGGALQSSSLLGRIMRAWRGSAKRGGSIHGRIKRFLGLLWNA--AGSSAGHDVKRSTIRSGSLGGVGGGRLG-----GNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQPPPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314
The following BLAST results are available for this feature:
BLAST of NO08G03450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26784.12.200e-10061.36ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G03450NO08G03450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G03450.1NO08G03450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G03450.1.cds1NO08G03450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03450.1.cds2NO08G03450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G03450.1.cds3NO08G03450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G03450.1 ID=NO08G03450.1|Name=NO08G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp
TAGACAGACTGAGCGACAGCAGGGGCATGACAAGAAGAAGAAGGGGCATT
GGCTCCTCCTCATGGCGGCCAGGATATTTTTCATCTATTGCAGTCTTCTC
CAACCTCTGTCTCCTCGGCTTCCTCCTCTCCACCATCCTCCCCTCCGTGG
CTGCCAGGCGCAGCAGAAGCAGTAGCAGCGGTGTCAGTACCAGCCTTACC
ACCACCATGGCTTCACAACAGAGAAGCACTGCTTTAGAAGTAGAAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCACCACAGCTGC
GGCCAATAGCAGAAGGACAACTGCTCCATCCCTTCCTGGCCTTGACTACG
CGTGGCGGGGCCTCTCAATCCTCCAGCTTGATGGGACGCATCTTGCGCGC
ATGGCGGGGTAGCGCCAAAAATGGCGGAAGCATTTATGGTCGAATGAAGC
GATTCCTCGGTGCCTTGTGGAATGGAAAGAGAAGTGGTGCAAGCAACTGT
AACACAGGAGGGCGGAGCAATATTCGGAGTGCTGGTGGAGCAGGGAGAGG
GGCGGGCGGGATGGGAAGGAAGCTTGGAAAGAGCAGTCGGGCGGAGAAGC
ACTTGGGCACAGAGTTTCGTCGTGGGAATGCCAATTTTCGGATCCAGAAG
GAATTGCGGGAATGGCTGGCCAACCCCATGGACAACATGCATGTGGCCGT
GGGCGATAATTTGCGGGTGTGGGTCGTGACACTCACGGGTGCCAAGGGCA
CTGTGTTTGCTGGAGAGAAGTACAAATTGAAGTTCACCTTCCCCGTGGAC
TACCCCAGCAAACCCCCCTCGGTCTACTTCCTTCAACCCACCCCCCGCCA
CGAACATGTGTATACCAACGGCGACATCTGTCTGAACCTCCTCGGTCGCG
ATTGGCGGCCCAACATGACTGCCTCTATGCTGGCCTTGTCGATCCTGTCG
ATGCTCTCATCGGCCAAGGAAAAAAAGATCCCGCAAGATAATCACGTTCA
TGCCGACAACCCGCCGGGGAGGGAGCAAGCGAATTGGCTATACCACGATG
ACAAATGCTAAGAAGAAAAGTTTTTCGTGAGAAGAAAAGAAAAAGACACA
CTTGCAAGTAAGAACAAAGAATCAAAAAAGATACTCTTGGGGAAAAGTAT
CCAGGCGTTATGGTTTTGTTATACTGCTGTGGACAGGGTGTACAAAGAAA
AGGCAGAGTGAGTTGAAC
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protein sequence of NO08G03450.1

>NO08G03450.1-protein ID=NO08G03450.1-protein|Name=NO08G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MTRRRRGIGSSSWRPGYFSSIAVFSNLCLLGFLLSTILPSVAARRSRSSS
SGVSTSLTTTMASQQRSTALEVEAAAAAAAAAAAEASAPQLRPIAEGQLL
HPFLALTTRGGASQSSSLMGRILRAWRGSAKNGGSIYGRMKRFLGALWNG
KRSGASNCNTGGRSNIRSAGGAGRGAGGMGRKLGKSSRAEKHLGTEFRRG
NANFRIQKELREWLANPMDNMHVAVGDNLRVWVVTLTGAKGTVFAGEKYK
LKFTFPVDYPSKPPSVYFLQPTPRHEHVYTNGDICLNLLGRDWRPNMTAS
MLALSILSMLSSAKEKKIPQDNHVHADNPPGREQANWLYHDDKC*
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mRNA from alignment at chr8:961848..963653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G03450.1 ID=NO08G03450.1|Name=NO08G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp|location=Sequence derived from alignment at chr8:961848..963653+ (Nannochloropsis oceanica)
TAGACAGACTGAGCGACAGCAGGGGCATGACAAGAAGAAGAAGGGGCATT
GGCTCCTCCTCATGGCGGCCAGGATATTTTTCATCTATTGCAGTCTTCTC
CAACCTCTGTCTCCTCGGCTTCCTCCTCTCCACCATCCTCCCCTCCGTGG
CTGCCAGGCGCAGCAGAAGCAGTAGCAGCGGTGTCAGTACCAGCCTTACC
ACCACCATGGCTTCACAACAGAGAAGCACTGCTTTAGAAGTAGAAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCACCACAGCTGC
GGCCAATAGCAGAAGGACAACTGCTCCATCCCTTCCTGGCCTTGACTACG
CGTGGCGGGGCCTCTCAATCCTCCAGCTTGATGGGACGCATCTTGCGCGC
ATGGCGGGGTAGCGCCAAAAATGGCGGAAGCATTTATGGTCGAATGAAGC
GATTCCTCGGTGCCTTGTGGAATGGAAAGAGAAGTGGTGCAAGCAACTGT
AACACAGGAGGGCGGAGCAATATTCGGAGTGCTGGTGGAGCAGGGAGAGG
GGCGGGCGGGATGGGAAGGAAGCTTGGAAAGAGCAGTCGGGCGGAGAAGC
ACTTGGGCACAGAGTTTCGTCGTGGGAATGCCAATTTTCGGATCCAGAAG
GTAAGAATTGTAGGCGGGGGTGGGTGGCGTATATTGTGGTGGGTAGTGTA
TATTGTGGTGCGATTTGAAGATAGGGTTTGCATTGGCTTGGCGTGGTGGA
TTATTACTTTTTTACAGTGCGTCATCCATGCCTTTGGAGGTAGTATTCGT
CGTCGTCGTATTTATCGCTCACATCCCGTACCTCCACCTTCCCAAATATA
CAGGAATTGCGGGAATGGCTGGCCAACCCCATGGACAACATGCATGTGGC
CGTGGGCGATAATTTGCGGGTGTGGGTCGTGACACTCACGGGTGCCAAGG
GCACTGTGTTTGCTGGAGAGAAGTACAAATTGAAGGTATGTATTGTTGAT
TGAGATGCGAGGAAGTGTCTTGTGTGTGCTGGTGGTGAATGGGTGGGTAA
AGAGGTCGGGTGTGGGAGGAGGAGGGAGGACAAGTGGGAGGGTATCTATG
GATGAGGGCTTATTAGAACATCAACGTTTTTTTGGGCGTACGGCCGGCTG
GCTATTATTTCCCCTGTGCCATCGTCTGATCTCTTCTTCTACAGCTGCTG
AGCATGCGTTACATTTAGAGATCGTCGTGATGTGAACGGATGTCAATCAA
ACGCCCGACTCTCACTCTACGGTCTTCTCACATTCCATCATCCCCTTCCA
TCAATCACTCACTCACCTACAATATGAACTCCCGCATCTCTCTTCTTCCT
GCTCCACCACCACTAAACAGTTCACCTTCCCCGTGGACTACCCCAGCAAA
CCCCCCTCGGTCTACTTCCTTCAACCCACCCCCCGCCACGAACATGTGTA
TACCAACGGCGACATCTGTCTGAACCTCCTCGGTCGCGATTGGCGGCCCA
ACATGACTGCCTCTATGCTGGCCTTGTCGATCCTGTCGATGCTCTCATCG
GCCAAGGAAAAAAAGATCCCGCAAGATAATCACGTTCATGCCGACAACCC
GCCGGGGAGGGAGCAAGCGAATTGGCTATACCACGATGACAAATGCTAAG
AAGAAAAGTTTTTCGTGAGAAGAAAAGAAAAAGACACACTTGCAAGTAAG
AACAAAGAATCAAAAAAGATACTCTTGGGGAAAAGTATCCAGGCGTTATG
GTTTTGTTATACTGCTGTGGACAGGGTGTACAAAGAAAAGGCAGAGTGAG
TTGAAC
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Coding sequence (CDS) from alignment at chr8:961848..963653+

>NO08G03450.1 ID=NO08G03450.1|Name=NO08G03450.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr8:961848..963653+ (Nannochloropsis oceanica)
ATGACAAGAAGAAGAAGGGGCATTGGCTCCTCCTCATGGCGGCCAGGATA
TTTTTCATCTATTGCAGTCTTCTCCAACCTCTGTCTCCTCGGCTTCCTCC
TCTCCACCATCCTCCCCTCCGTGGCTGCCAGGCGCAGCAGAAGCAGTAGC
AGCGGTGTCAGTACCAGCCTTACCACCACCATGGCTTCACAACAGAGAAG
CACTGCTTTAGAAGTAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGAAGCTTCAGCACCACAGCTGCGGCCAATAGCAGAAGGACAACTGCTC
CATCCCTTCCTGGCCTTGACTACGCGTGGCGGGGCCTCTCAATCCTCCAG
CTTGATGGGACGCATCTTGCGCGCATGGCGGGGTAGCGCCAAAAATGGCG
GAAGCATTTATGGTCGAATGAAGCGATTCCTCGGTGCCTTGTGGAATGGA
AAGAGAAGTGGTGCAAGCAACTGTAACACAGGAGGGCGGAGCAATATTCG
GAGTGCTGGTGGAGCAGGGAGAGGGGCGGGCGGGATGGGAAGGAAGCTTG
GAAAGAGCAGTCGGGCGGAGAAGCACTTGGGCACAGAGTTTCGTCGTGGG
AATGCCAATTTTCGGATCCAGAAGGAATTGCGGGAATGGCTGGCCAACCC
CATGGACAACATGCATGTGGCCGTGGGCGATAATTTGCGGGTGTGGGTCG
TGACACTCACGGGTGCCAAGGGCACTGTGTTTGCTGGAGAGAAGTACAAA
TTGAAGTTCACCTTCCCCGTGGACTACCCCAGCAAACCCCCCTCGGTCTA
CTTCCTTCAACCCACCCCCCGCCACGAACATGTGTATACCAACGGCGACA
TCTGTCTGAACCTCCTCGGTCGCGATTGGCGGCCCAACATGACTGCCTCT
ATGCTGGCCTTGTCGATCCTGTCGATGCTCTCATCGGCCAAGGAAAAAAA
GATCCCGCAAGATAATCACGTTCATGCCGACAACCCGCCGGGGAGGGAGC
AAGCGAATTGGCTATACCACGATGACAAATGCTAA
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Synonyms
Publications