NO08G01860.1, NO08G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01860.1
Unique NameNO08G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1342
Alignment locationchr8:568311..569988 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:568311..569988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01860.1 vs.
Match: EWM26588.1 (pci domain-containing protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 699.5 bits (1804), Expect = 6.000e-198
Identity = 345/400 (86.25%), Postives = 373/400 (93.25%), Query Frame = 0 
Query:    1 MVYQQVPAYLTAVAEASQQADGIALTHLFSYPCLSHRLGHQFARLDVRQAIHNHATLKRVAHVPQLLEPFLRGAGCLADGELEAAFEHHRGAFAMACGMYKEQQEEWLLNLMRKLARGLRLLAQKVDKETVRLDPIMNEAVKAISDKFRVFGTVTASGRRRVALMLANEQIICYLQLNNPRQCKPLTDWADARHKLTDEDFTSGEFAQADAVTYHFLRARLFLLDTNYKEAERFLAYAFKHCPVAAKRNKRTILSYMVPVKLNLGLLPRRGLLERFQLKEFESLVAALRDGDFRLYQQELDRYQDEFIARGVYIILEKLKLFVYRNFFKKIWVLKGKESRLSIDLVFQLHQAIDPAADVDIDEIECLLANLIFKGNIRGYIAHEKRILVLSKDNPFPYPQ 401
            M++++V AYL AV EAS+Q DG ALTHLFSY CLSH LGHQFAR+DVRQAI N+A +KRVAHVP+LLEPFLR AGCLAD E+E AFEHHR AF +A  +YK+ QEEWLLNLMRKLARGLRLLAQKVDKE VR DPIMNEAVKAISDKFR+FGTVTASGRRRVALMLANEQIICYLQLNNPRQCKPLTDWADARHKLTD+DFTSGEFAQADAVTYHFLRARLFLLDTNY EAERFL YAF+HCP AA RNKRTILSYMVPVKLNLGLLPRRGLLERFQLKEFE+LVAALRDGDFRLYQ++LD+YQD+FIARGVYIILEKLKLFVYRNFFKKIWVLKGKESRLSI+L+ +LHQ +DPA+DVDIDEIECLLANLI+KG+IRGYIAHEKRILVLSKD PFP PQ
Sbjct:   38 MLFRKVTAYLDAVTEASRQEDGTALTHLFSYDCLSHGLGHQFARMDVRQAIRNNAAVKRVAHVPELLEPFLRAAGCLADQEVEKAFEHHRSAFVLAGDLYKDLQEEWLLNLMRKLARGLRLLAQKVDKEKVRFDPIMNEAVKAISDKFRLFGTVTASGRRRVALMLANEQIICYLQLNNPRQCKPLTDWADARHKLTDDDFTSGEFAQADAVTYHFLRARLFLLDTNYIEAERFLTYAFRHCPAAAHRNKRTILSYMVPVKLNLGLLPRRGLLERFQLKEFEALVAALRDGDFRLYQEQLDKYQDDFIARGVYIILEKLKLFVYRNFFKKIWVLKGKESRLSIELIMRLHQGLDPASDVDIDEIECLLANLIYKGSIRGYIAHEKRILVLSKDKPFPSPQ 437
The following BLAST results are available for this feature:
BLAST of NO08G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26588.16.000e-19886.25pci domain-containing protein 2 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01860NO08G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01860.1NO08G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01860.1.cds1NO08G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01860.1.cds2NO08G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01860.1.cds3NO08G01860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01860.1 ID=NO08G01860.1|Name=NO08G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp
CAACCACCACTCTCACACCTCACCGCGCACCAAACCAAGGCACAGGGAAA
AAAATGGTATATCAGCAGGTCCCCGCATACCTGACAGCCGTGGCCGAAGC
TTCCCAACAAGCCGATGGCATTGCCTTAACGCACCTCTTCTCCTATCCCT
GTCTCTCCCATCGCCTAGGGCACCAGTTTGCCCGCCTGGACGTCCGACAA
GCCATCCACAACCACGCAACACTCAAACGGGTCGCTCATGTACCACAACT
TCTCGAGCCGTTCTTACGGGGGGCGGGCTGCTTGGCAGACGGCGAACTCG
AGGCAGCCTTCGAGCATCATCGGGGCGCGTTCGCCATGGCTTGTGGGATG
TACAAGGAGCAGCAAGAAGAGTGGTTGCTCAACCTTATGCGGAAGCTGGC
GCGAGGGCTGCGGCTATTGGCACAAAAGGTGGATAAGGAAACAGTGCGGC
TGGACCCCATAATGAACGAGGCCGTCAAGGCCATCTCAGACAAGTTCCGT
GTTTTTGGCACGGTCACAGCTAGTGGACGTCGACGGGTAGCCCTGATGCT
TGCGAACGAGCAGATTATTTGCTACCTCCAATTAAACAACCCACGGCAAT
GCAAGCCATTGACTGATTGGGCCGATGCCCGACATAAGCTGACGGACGAG
GATTTCACCTCGGGAGAGTTTGCACAGGCGGATGCTGTGACATATCATTT
CTTGCGGGCCCGTCTCTTTTTGCTCGACACGAATTATAAGGAGGCGGAGA
GGTTTTTGGCATATGCCTTCAAGCATTGTCCTGTGGCAGCGAAGAGGAAT
AAGCGGACGATTTTGTCGTACATGGTGCCAGTAAAACTTAATTTGGGGTT
GCTACCGCGGCGCGGCCTCCTGGAGCGTTTCCAGCTCAAGGAGTTCGAGT
CGTTGGTGGCTGCCCTGCGGGACGGGGACTTCCGCCTGTATCAGCAAGAG
CTAGATCGATACCAAGACGAGTTTATCGCACGCGGCGTTTACATCATTTT
AGAGAAGCTCAAGTTGTTCGTGTATCGGAACTTCTTCAAGAAGATCTGGG
TGCTTAAAGGCAAGGAGTCAAGGCTCTCGATCGACCTCGTCTTTCAGCTG
CACCAAGCGATAGATCCCGCTGCGGACGTGGACATTGACGAAATTGAGTG
TTTGCTCGCCAACTTGATCTTCAAAGGGAATATTCGAGGGTATATTGCTC
ACGAAAAGCGCATTTTGGTGCTGTCGAAGGACAATCCTTTCCCGTATCCG
CAACAAAAGTAGGGAAAAGGAAGGAGGGTGCAAGGTGGGCATGTATAGCT
AACAAAGATATAAAAGCGCGAGGGAAAATAGGCAATGGTTGA
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protein sequence of NO08G01860.1

>NO08G01860.1-protein ID=NO08G01860.1-protein|Name=NO08G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MVYQQVPAYLTAVAEASQQADGIALTHLFSYPCLSHRLGHQFARLDVRQA
IHNHATLKRVAHVPQLLEPFLRGAGCLADGELEAAFEHHRGAFAMACGMY
KEQQEEWLLNLMRKLARGLRLLAQKVDKETVRLDPIMNEAVKAISDKFRV
FGTVTASGRRRVALMLANEQIICYLQLNNPRQCKPLTDWADARHKLTDED
FTSGEFAQADAVTYHFLRARLFLLDTNYKEAERFLAYAFKHCPVAAKRNK
RTILSYMVPVKLNLGLLPRRGLLERFQLKEFESLVAALRDGDFRLYQQEL
DRYQDEFIARGVYIILEKLKLFVYRNFFKKIWVLKGKESRLSIDLVFQLH
QAIDPAADVDIDEIECLLANLIFKGNIRGYIAHEKRILVLSKDNPFPYPQ
QK*
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mRNA from alignment at chr8:568311..569988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01860.1 ID=NO08G01860.1|Name=NO08G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp|location=Sequence derived from alignment at chr8:568311..569988- (Nannochloropsis oceanica)
CAACCACCACTCTCACACCTCACCGCGCACCAAACCAAGGCACAGGGAAA
AAAATGGTATATCAGCAGGTCCCCGCATACCTGACAGCCGTGGCCGAAGC
TTCCCAACAAGCCGATGGCATTGCCTTAACGCACCTCTTCTCCTATCCCT
GTCTCTCCCATCGCCTAGGGCACCAGTTTGCCCGCCTGGACGTCCGACAA
GCCATCCACAACCACGCAACACTCAAACGGGTCGCTCATGTACCACAACT
TCTCGAGCCGTTCTTACGGGGGGCGGGCTGCTTGGCAGACGGCGAACTCG
AGGCAGCCTTCGAGCATCATCGGGGCGCGTTCGCCATGGCTTGTGGGATG
TACAAGGAGCAGCAAGAAGAGTGGTTGCTCAACCTTATGCGGAAGCTGGC
GCGAGGGCTGCGGCTATTGGCACAAAAGGTGGATAAGGAAACAGTGCGGC
TGGACCCCATAATGAACGAGGCCGTCAAGGCCATCTCAGACAAGTTCCGT
GTTTTTGGCACGGTCACAGCTAGTGGACGTCGACGGGTAGCCCTGATGCT
TGCGAACGAGCAGATTATTTGCTACCTCCAATTAAACAACCCACGGCAAT
GCAAGCCATTGACTGATTGGGCCGATGCCCGACATAAGCTGACGGACGAG
GATTTCACCTCGGGAGAGTTTGCACAGGCGGATGCTGTGACATATCATTT
CTTGCGGGCCCGTCTCTTTTTGCTCGACACGAATTATAAGGAGGCGGAGA
GGTTTTTGGCATATGCCTTCAAGCATTGTCCTGTGGCAGCGAAGAGGAAT
AAGCGGACGATTTTGTCGTACATGGTGCCAGTAAAACTTAATTTGGGGTT
GCTACCGCGGGTACGACGGAGGGTGGAGGGAATGCGGGGTAGAGGGAGGG
AGAGAGGGAGGACTGGGAGAGGTGGTTGAGCTTTCATTTTTGTCCGTCAA
GATAAGTGCGGGATTTCTCTTCTCCTTGTCCTCTAAATCACCTTTCTCCC
CCAACAATTTCTCGAAGCGCGGCCTCCTGGAGCGTTTCCAGCTCAAGGAG
TTCGAGTCGTTGGTGGCTGCCCTGCGGGACGGGGACTTCCGCCTGTATCA
GCAAGAGCTAGATCGATACCAAGACGAGTTTATCGCACGCGGCGTTTACA
TCATTTTAGAGAAGCTCAAGTTGTTCGTGTATCGGAACTTCTTCAAGAAG
ATGTCAGTACATGGGGATGGAGAGAGGGAGGGAGGGAGGGAGGGGGGGCC
CGCAAGAGAGGAAGGACTTCTACTACTTGAGGCTTGCAATTAGCTATGCC
ATTTCTTCCTTCTGTTGATCAGGCTGTCATCATGAATACTCACAATCTCC
AAACGCTCACATCACTCAACGGAACCAACAGCTGGGTGCTTAAAGGCAAG
GAGTCAAGGCTCTCGATCGACCTCGTCTTTCAGCTGCACCAAGCGATAGA
TCCCGCTGCGGACGTGGACATTGACGAAATTGAGTGTTTGCTCGCCAACT
TGATCTTCAAAGGGAATATTCGAGGGTATATTGCTCACGAAAAGCGCATT
TTGGTGCTGTCGAAGGACAATCCTTTCCCGTATCCGCAACAAAAGTAGGG
AAAAGGAAGGAGGGTGCAAGGTGGGCATGTATAGCTAACAAAGATATAAA
AGCGCGAGGGAAAATAGGCAATGGTTGA
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Coding sequence (CDS) from alignment at chr8:568311..569988-

>NO08G01860.1 ID=NO08G01860.1|Name=NO08G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr8:568311..569988- (Nannochloropsis oceanica)
ATGGTATATCAGCAGGTCCCCGCATACCTGACAGCCGTGGCCGAAGCTTC
CCAACAAGCCGATGGCATTGCCTTAACGCACCTCTTCTCCTATCCCTGTC
TCTCCCATCGCCTAGGGCACCAGTTTGCCCGCCTGGACGTCCGACAAGCC
ATCCACAACCACGCAACACTCAAACGGGTCGCTCATGTACCACAACTTCT
CGAGCCGTTCTTACGGGGGGCGGGCTGCTTGGCAGACGGCGAACTCGAGG
CAGCCTTCGAGCATCATCGGGGCGCGTTCGCCATGGCTTGTGGGATGTAC
AAGGAGCAGCAAGAAGAGTGGTTGCTCAACCTTATGCGGAAGCTGGCGCG
AGGGCTGCGGCTATTGGCACAAAAGGTGGATAAGGAAACAGTGCGGCTGG
ACCCCATAATGAACGAGGCCGTCAAGGCCATCTCAGACAAGTTCCGTGTT
TTTGGCACGGTCACAGCTAGTGGACGTCGACGGGTAGCCCTGATGCTTGC
GAACGAGCAGATTATTTGCTACCTCCAATTAAACAACCCACGGCAATGCA
AGCCATTGACTGATTGGGCCGATGCCCGACATAAGCTGACGGACGAGGAT
TTCACCTCGGGAGAGTTTGCACAGGCGGATGCTGTGACATATCATTTCTT
GCGGGCCCGTCTCTTTTTGCTCGACACGAATTATAAGGAGGCGGAGAGGT
TTTTGGCATATGCCTTCAAGCATTGTCCTGTGGCAGCGAAGAGGAATAAG
CGGACGATTTTGTCGTACATGGTGCCAGTAAAACTTAATTTGGGGTTGCT
ACCGCGGCGCGGCCTCCTGGAGCGTTTCCAGCTCAAGGAGTTCGAGTCGT
TGGTGGCTGCCCTGCGGGACGGGGACTTCCGCCTGTATCAGCAAGAGCTA
GATCGATACCAAGACGAGTTTATCGCACGCGGCGTTTACATCATTTTAGA
GAAGCTCAAGTTGTTCGTGTATCGGAACTTCTTCAAGAAGATCTGGGTGC
TTAAAGGCAAGGAGTCAAGGCTCTCGATCGACCTCGTCTTTCAGCTGCAC
CAAGCGATAGATCCCGCTGCGGACGTGGACATTGACGAAATTGAGTGTTT
GCTCGCCAACTTGATCTTCAAAGGGAATATTCGAGGGTATATTGCTCACG
AAAAGCGCATTTTGGTGCTGTCGAAGGACAATCCTTTCCCGTATCCGCAA
CAAAAGTAG
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Synonyms
Publications