NO08G01840.1, NO08G01840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01840.1
Unique NameNO08G01840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2208
Alignment locationchr8:564150..566516 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:564150..566516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01840.1 vs.
Match: XP_005854445.1 (hypothetical protein NGA_0015702 [Nannochloropsis gaditana CCMP526]; EKU21911.1 hypothetical protein NGA_0015702 [Nannochloropsis gaditana CCMP526]; EWM26768.1 aureochrome1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 402.9 bits (1034), Expect = 1.300e-108
Identity = 202/226 (89.38%), Postives = 215/226 (95.13%), Query Frame = 0 
Query:  234 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRTHLKDGAHDLLKSCEVEPEDSLLTSDPASATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLNLTGYQMDQILGRNCRFLQGPDTDPSAVDKIRRAIEDGTDGSVCLLNYRADGTTFWNQFFIAALRGADGNVVNFVGVQCRVSEEYALEVLKKEMESTTSTGAPS 460
            MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIR+HLK+GA DLLK+CEVE ++S+L SDP SATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFL+LTGYQMDQILGRNCRFLQGPDTDP+AVDKIRRAIEDGTDGSVCLLNYRADG+TFWNQFFIAALRGADGN+VN+VGVQC+VSEEYA EVLKKE  S+T   A S
Sbjct:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHLKEGADDLLKTCEVEVDESILASDPCSATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYASGGFLSLTGYQMDQILGRNCRFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYVGVQCKVSEEYASEVLKKEATSSTVAEASS 226
The following BLAST results are available for this feature:
BLAST of NO08G01840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200SequenceXP_005854445.1
Match NameE-valueIdentityDescription
XP_005854445.11.300e-10889.38hypothetical protein NGA_0015702 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01840NO08G01840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01840.1NO08G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01840.1.cds1NO08G01840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01840.1.cds2NO08G01840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01840.1 ID=NO08G01840.1|Name=NO08G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp
AACCTCACACACCCTCCATTTTCTCTGGAGTACATGAAGCCAGAGTGCAA
CAACCGTCCTCCACTGCGATATTTTTGGCACCTCACTCAATCCTTGTGAC
CATCTCTCCAATCTTCCTTAGTTGTTGTTATTATAAGAGTAGGATGGCGC
TTCTGAGGGCAGGCGCGATCGTGTGGTGAAGCTGTCGCGCTTGATATGGG
AAGATCCTGCGCTTCACATGCCGACTTGCTTCTTTGATGATTGGGAGTCT
TGCATTTAATGTCGCCCTCCTTCGGTCCCACCCTGCGTGCATCACGCTGG
CACATTTAAGCATGATGCGGACAATTACCTGCGGTCGCGACACGGGCCTG
GTTTGTGGCATTCGGTCTTTCGCCTGGAACAGAATTTCGCCTCATGGCCG
GTAGCTTTCATCGAGCATCTATCATCCATGGCTCCTTCGGTTGTGTTATA
GGACATTTTTGGTCTCTATACTTTTACTATCAGTGAAATATACGCTATTT
CATTACTTCCGAAGCCCGGGAATTTCCGGCTGGCCAATCTTAAGACCTGT
CGACGCTCCATAGTCCCGAGCATGACAGGGTCTACGCCACTGCCGCTACT
TGCTGTTGGTCGCCTTAGCATCCTCATCCCAGCATTTCTAACCCTTTCTC
CTCTTTCTCCCCGCGCTTCATAATGCACAGCATAACATACGTACTGGCGG
GCACATAAGCCCTTGATCTCGGGGCATTTTATCGCGCTCTCCTTTCCTCA
ACCCCCGCTGTCCCAAGCCACTGGCGATTAACCACGGTCTCAGTTGCCTA
CCCGCCGATGGAAGGGCTAGGACAGCCGGGAGATGCCGGGGGGGGAAGTG
GCAGCAGTACTGGTGGAGGTGCATCAGCAGGAGCCAGCGCCAGCTTCCCC
CCTCCTCCAGTCTTTGGCTTCTCCAGGGACGACTCGATTAATCTGGAGGA
CATCTTCGTAGATTGGTTCAACGAAGATAATCTCAACGGCCCGCCTTCTT
CCTATCAAAGTAGTAGCCAGGATTCTGCTGCTCCTGCTATCCTTCCGCAA
GAGGCTTATGTCCCCGCCCTCACCACCGCTCAGAAGCTCCAGCAGTTGCA
ACAGCTTCAACAGCAGCAACGACTGGAGCAGCAGCAGCTTCTGGCGTCGC
ACCAGGCGTCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCAGCAG
TCAGGAATTGGGAAGGCAGGGAGAACGTCGCCATTGACGATGATGATGCC
TACGGGAGGAGATAAAAGCAAGGCTGCTGGTGCTGCTACTGTTGGTGGTG
GGAGGGCCACGGTGGTGAACAATGGAGGAGGAATGGGAGGGGTTGAGGAC
GAGGAAGGGGAGGAGGACGACTTTGAGGATGACTATGAGGACGATGATGG
GGGGACTAGCACAGGGAGTGGAGGGGGAGGAGGAGGGCGACGCAAGAAGC
GGCAAAGGGGCGCGGGAGGGGGGGGAAGTATGGGTGGAGGGAGTTCGGGG
AGGAGGATGACTGAGGAGCAGAAAGTGGAAAGGCGGGAGAGGAATCGGGA
GCATGCCAAACGGTCCCGTGTGAGGAAGAAGTTCTTGTTGGAGTCATTGC
AGAAGAGCGTGAATGCCTTGCAGGAGGAGAACGACAAGCTGCGGGGGGCC
ATTCGCACGCATCTCAAGGACGGGGCACACGATTTACTCAAGTCGTGTGA
GGTGGAGCCGGAGGACTCTTTGTTGACCTCAGATCCTGCATCGGCGACCA
AGATTTTGGATGATCCAGATTACACCCTTGTGAAGGCCCTACAGACCGCC
CAGCAGAACTTCGTGATCACCGACCCGACGCTGCCTGACAATCCCATTGT
CTACGCCTCTGGCGGCTTTTTAAATCTCACCGGCTACCAAATGGATCAAA
TCCTCGGCCGCAACTGTCGCTTCCTCCAAGGGCCTGACACGGACCCTTCC
GCCGTGGACAAGATCCGAAGAGCCATCGAAGATGGGACAGACGGGAGCGT
GTGTCTGTTGAATTACCGCGCGGACGGCACGACTTTTTGGAACCAGTTTT
TCATCGCGGCCCTGCGTGGGGCGGATGGGAACGTTGTCAACTTTGTTGGT
GTACAATGCCGTGTGAGCGAGGAGTACGCGCTGGAGGTGCTGAAAAAGGA
GATGGAGAGCACGACCTCGACGGGGGCGCCGTCGACGGGGATGCATTTGA
AGGGATAG
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protein sequence of NO08G01840.1

>NO08G01840.1-protein ID=NO08G01840.1-protein|Name=NO08G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MEGLGQPGDAGGGSGSSTGGGASAGASASFPPPPVFGFSRDDSINLEDIF
VDWFNEDNLNGPPSSYQSSSQDSAAPAILPQEAYVPALTTAQKLQQLQQL
QQQQRLEQQQLLASHQASEQQQQQQQQQFQQSGIGKAGRTSPLTMMMPTG
GDKSKAAGAATVGGGRATVVNNGGGMGGVEDEEGEEDDFEDDYEDDDGGT
STGSGGGGGGRRKKRQRGAGGGGSMGGGSSGRRMTEEQKVERRERNREHA
KRSRVRKKFLLESLQKSVNALQEENDKLRGAIRTHLKDGAHDLLKSCEVE
PEDSLLTSDPASATKILDDPDYTLVKALQTAQQNFVITDPTLPDNPIVYA
SGGFLNLTGYQMDQILGRNCRFLQGPDTDPSAVDKIRRAIEDGTDGSVCL
LNYRADGTTFWNQFFIAALRGADGNVVNFVGVQCRVSEEYALEVLKKEME
STTSTGAPSTGMHLKG*
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mRNA from alignment at chr8:564150..566516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01840.1 ID=NO08G01840.1|Name=NO08G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp|location=Sequence derived from alignment at chr8:564150..566516- (Nannochloropsis oceanica)
AACCTCACACACCCTCCATTTTCTCTGGAGTACATGAAGCCAGAGTGCAA
CAACCGTCCTCCACTGCGATATTTTTGGCACCTCACTCAATCCTTGTGAC
CATCTCTCCAATCTTCCTTAGTTGTTGTTATTATAAGAGTAGGATGGCGC
TTCTGAGGGCAGGCGCGATCGTGTGGTGAAGCTGTCGCGCTTGATATGGG
AAGATCCTGCGCTTCACATGCCGACTTGCTTCTTTGATGATTGGGAGTCT
TGCATTTAATGTCGCCCTCCTTCGGTCCCACCCTGCGTGCATCACGCTGG
CACATTTAAGCATGATGCGGACAATTACCTGCGGTCGCGACACGGGCCTG
GTTTGTGGCATTCGGTCTTTCGCCTGGAACAGAATTTCGCCTCATGGCCG
GTAGCTTTCATCGAGCATCTATCATCCATGGCTCCTTCGGTTGTGTTATA
GGACATTTTTGGTCTCTATACTTTTACTATCAGTGAAATATACGCTATTT
CATTACTTCCGAAGCCCGGGAATTTCCGGCTGGCCAATCTTAAGACCTGT
CGACGCTCCATAGTCCCGAGCATGACAGGGTCTACGCCACTGCCGCTACT
TGCTGTTGGTCGCCTTAGCATCCTCATCCCAGCATTTCTAACCCTTTCTC
CTCTTTCTCCCCGCGCTTCATAATGCACAGCATAACATACGTACTGGCGG
GCACATAAGCCCTTGATCTCGGGGCATTTTATCGCGCTCTCCTTTCCTCA
ACCCCCGCTGTCCCAAGCCACTGGCGATTAACCACGGTCTCAGTTGCCTA
CCCGCCGATGGAAGGGCTAGGACAGCCGGGAGATGCCGGGGGGGGAAGTG
GCAGCAGTACTGGTGGAGGTGCATCAGCAGGAGCCAGCGCCAGCTTCCCC
CCTCCTCCAGTCTTTGGCTTCTCCAGGGACGACTCGATTAATCTGGAGGA
CATCTTCGTAGATTGGTTCAACGAAGATAATCTCAACGGCCCGCCTTCTT
CCTATCAAAGTAGTAGCCAGGATTCTGCTGCTCCTGCTATCCTTCCGCAA
GAGGCTTATGTCCCCGCCCTCACCACCGCTCAGAAGCTCCAGCAGTTGCA
ACAGCTTCAACAGCAGCAACGACTGGAGCAGCAGCAGCTTCTGGCGTCGC
ACCAGGCGTCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCAGCAG
TCAGGAATTGGGAAGGCAGGGAGAACGTCGCCATTGACGATGATGATGCC
TACGGGAGGAGATAAAAGCAAGGCTGCTGGTGCTGCTACTGTTGGTGGTG
GGAGGGCCACGGTGGTGAACAATGGAGGAGGAATGGGAGGGGTTGAGGAC
GAGGAAGGGGAGGAGGACGACTTTGAGGATGACTATGAGGACGATGATGG
GGGGACTAGCACAGGGAGTGGAGGGGGAGGAGGAGGGCGACGCAAGAAGC
GGCAAAGGGGCGCGGGAGGGGGGGGAAGTATGGGTGGAGGGAGTTCGGGG
AGGAGGATGACTGAGGAGCAGAAAGTGGAAAGGCGGGAGAGGAATCGGGA
GCATGCCAAACGGTCCCGTGTGAGGAAGAAGTTCTTGTTGGAGTCATTGC
AGAAGAGCGTGAATGCCTTGCAGGAGGAGAACGACAAGCTGCGGGGGGCC
ATTCGCACGCATCTCAAGGACGGGGCACACGATTTACTCAAGTCGTGTGA
GGTGGAGCCGGAGGACTCTTTGTTGACCTCAGATCCTGCATCGGCGACCA
AGATTTTGGATGATCCAGATTACACCCTTGTGAAGGCCCTACAGACCGCC
CAGCAGAACTTCGTGATCACCGACCCGACGCTGCCTGACAATCGTAAGTT
GGCTGAAAGGGAGTTTGGCTGTGTGGGTTCCGTGACTGCTTATATACGTG
TACCACAAGAATAGATCAAGATAACCACCACTTTTTGCTCCACTTATCGC
CCCCCCCTCTCCCCCTCTTCTCTCTCTCACTCTCTCCTGTTTTTGCACAC
AGCCATTGTCTACGCCTCTGGCGGCTTTTTAAATCTCACCGGCTACCAAA
TGGATCAAATCCTCGGCCGCAACTGTCGCTTCCTCCAAGGGCCTGACACG
GACCCTTCCGCCGTGGACAAGATCCGAAGAGCCATCGAAGATGGGACAGA
CGGGAGCGTGTGTCTGTTGAATTACCGCGCGGACGGCACGACTTTTTGGA
ACCAGTTTTTCATCGCGGCCCTGCGTGGGGCGGATGGGAACGTTGTCAAC
TTTGTTGGTGTACAATGCCGTGTGAGCGAGGAGTACGCGCTGGAGGTGCT
GAAAAAGGAGATGGAGAGCACGACCTCGACGGGGGCGCCGTCGACGGGGA
TGCATTTGAAGGGATAG
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Coding sequence (CDS) from alignment at chr8:564150..566516-

>NO08G01840.1 ID=NO08G01840.1|Name=NO08G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr8:564150..566516- (Nannochloropsis oceanica)
ATGGAAGGGCTAGGACAGCCGGGAGATGCCGGGGGGGGAAGTGGCAGCAG
TACTGGTGGAGGTGCATCAGCAGGAGCCAGCGCCAGCTTCCCCCCTCCTC
CAGTCTTTGGCTTCTCCAGGGACGACTCGATTAATCTGGAGGACATCTTC
GTAGATTGGTTCAACGAAGATAATCTCAACGGCCCGCCTTCTTCCTATCA
AAGTAGTAGCCAGGATTCTGCTGCTCCTGCTATCCTTCCGCAAGAGGCTT
ATGTCCCCGCCCTCACCACCGCTCAGAAGCTCCAGCAGTTGCAACAGCTT
CAACAGCAGCAACGACTGGAGCAGCAGCAGCTTCTGGCGTCGCACCAGGC
GTCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCAGCAGTCAGGAA
TTGGGAAGGCAGGGAGAACGTCGCCATTGACGATGATGATGCCTACGGGA
GGAGATAAAAGCAAGGCTGCTGGTGCTGCTACTGTTGGTGGTGGGAGGGC
CACGGTGGTGAACAATGGAGGAGGAATGGGAGGGGTTGAGGACGAGGAAG
GGGAGGAGGACGACTTTGAGGATGACTATGAGGACGATGATGGGGGGACT
AGCACAGGGAGTGGAGGGGGAGGAGGAGGGCGACGCAAGAAGCGGCAAAG
GGGCGCGGGAGGGGGGGGAAGTATGGGTGGAGGGAGTTCGGGGAGGAGGA
TGACTGAGGAGCAGAAAGTGGAAAGGCGGGAGAGGAATCGGGAGCATGCC
AAACGGTCCCGTGTGAGGAAGAAGTTCTTGTTGGAGTCATTGCAGAAGAG
CGTGAATGCCTTGCAGGAGGAGAACGACAAGCTGCGGGGGGCCATTCGCA
CGCATCTCAAGGACGGGGCACACGATTTACTCAAGTCGTGTGAGGTGGAG
CCGGAGGACTCTTTGTTGACCTCAGATCCTGCATCGGCGACCAAGATTTT
GGATGATCCAGATTACACCCTTGTGAAGGCCCTACAGACCGCCCAGCAGA
ACTTCGTGATCACCGACCCGACGCTGCCTGACAATCCCATTGTCTACGCC
TCTGGCGGCTTTTTAAATCTCACCGGCTACCAAATGGATCAAATCCTCGG
CCGCAACTGTCGCTTCCTCCAAGGGCCTGACACGGACCCTTCCGCCGTGG
ACAAGATCCGAAGAGCCATCGAAGATGGGACAGACGGGAGCGTGTGTCTG
TTGAATTACCGCGCGGACGGCACGACTTTTTGGAACCAGTTTTTCATCGC
GGCCCTGCGTGGGGCGGATGGGAACGTTGTCAACTTTGTTGGTGTACAAT
GCCGTGTGAGCGAGGAGTACGCGCTGGAGGTGCTGAAAAAGGAGATGGAG
AGCACGACCTCGACGGGGGCGCCGTCGACGGGGATGCATTTGAAGGGATA
G
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Synonyms
Publications