NO08G01740.1, NO08G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01740.1
Unique NameNO08G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1176
Alignment locationchr8:541712..542887 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:541712..542887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01740.1 vs.
Match: EWM26676.1 (mrna cap guanine-n7 methyltransferase 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 332.4 bits (851), Expect = 1.900e-87
Identity = 178/328 (54.27%), Postives = 218/328 (66.46%), Query Frame = 0 
Query:   26 GGEGGRQDRRNMWVIAARSG--SALRRGGGRGEGGREGGRVYQGAVYAAHEVHGIFIYFGMVVKEEREGRDGGVEGGAIRFFEASGRITRSGLPALVLEDLEKKAEEGRRGGREGGGIRRETLVEVRVKSVERPLGGKPKVELVLVPRRKLLILDLNGVLFNRYPVGDARREGGRGGWEGGRVIKRPGCDDFLEFCFAHFDVAAWSCCRKETLEMEIFNGREKELVFVNWGMHSTNLWPRHSAVSKDKPLFLKELRRLWEGQLERVGYGEQNTILLDNHVEKFEGNPVGTCVVVPEYEDGAEPEDGVLSLEGELVGHLRRMAVAPEGG 352
            GG  G++  R      AR+G  + L RG        E G  YQG VYA+HE HG F YFG +             G   R FE SGRITR GLP+  + D+E++    R      G +R E L+ +RVKS+ERP+GGKP+VEL+LVP RKLLILDLNGVLFNRY V D RR  G        + KRP C++FL+FCF HF VA WSCC KET+E+ +F  REK+L+F N+  HS NLWPRHSAVS DKPLFLK+L RLW+ QL+RV +   +TIL+DNH+EKFE NP+GTCV+VPEY D A+P D +LSLEGELV HLR MA  P+ G
Sbjct:  237 GGRPGKEAGRE----GARTGDQTPLSRGEPLSLDDAEVGGTYQGFVYASHETHGFFFYFGRLDP-----------GRKFRSFECSGRITRFGLPSPWIADMERRVLRARESAP--GLVRPEWLLPLRVKSMERPVGGKPRVELILVPERKLLILDLNGVLFNRYSVHDERRGLGE-------IQKRPKCEEFLDFCFEHFHVACWSCCNKETMELGVFGAREKDLLFSNYSAHSINLWPRHSAVSVDKPLFLKDLSRLWKQQLDRVAFDASSTILVDNHLEKFERNPLGTCVLVPEYSDAAQPPDDLLSLEGELVAHLRAMAHTPDSG 540
The following BLAST results are available for this feature:
BLAST of NO08G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26676.11.900e-8754.27mrna cap guanine-n7 methyltransferase 1-like prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01740NO08G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01740.1NO08G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01740.1.cds1NO08G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01740.1 ID=NO08G01740.1|Name=NO08G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
ATGGGAGGAGGACGAGGACCTGATGATGGATCAAGGAAAGGGAAGGCCAA
CAGCAACAGCAGCTGCAGTGAAGAGGGAGGAGAGGGAGGGAGGCAGGATC
GAAGGAACATGTGGGTTATTGCGGCGCGGAGTGGATCTGCCCTTAGACGA
GGTGGAGGTCGGGGGGAGGGAGGGAGGGAGGGAGGGCGGGTGTACCAAGG
GGCCGTGTATGCGGCGCATGAAGTGCACGGAATATTTATTTACTTTGGAA
TGGTAGTGAAAGAGGAGAGGGAGGGGAGAGACGGAGGGGTAGAAGGAGGA
GCCATTAGATTTTTTGAGGCCAGCGGGCGAATAACGCGAAGCGGATTGCC
GGCATTAGTGTTGGAGGACCTCGAAAAAAAGGCGGAGGAGGGGAGGAGGG
GAGGGAGGGAGGGAGGAGGGATAAGGAGGGAAACTTTGGTGGAGGTGAGG
GTGAAGAGCGTGGAGAGGCCGTTGGGGGGAAAACCGAAGGTGGAGCTGGT
GCTGGTCCCGAGGAGGAAGTTGCTGATATTGGACTTGAATGGGGTGTTAT
TTAATCGCTACCCCGTGGGGGATGCTCGACGGGAAGGAGGAAGAGGAGGT
TGGGAGGGAGGACGGGTGATAAAACGGCCGGGTTGCGACGATTTCTTGGA
GTTTTGTTTCGCGCACTTTGATGTGGCGGCTTGGAGCTGCTGTAGGAAGG
AGACGCTGGAGATGGAGATTTTCAACGGGAGAGAGAAAGAGTTGGTGTTT
GTGAACTGGGGCATGCACAGCACGAATTTATGGCCGAGACACTCGGCGGT
TAGTAAAGACAAGCCTTTATTTCTGAAAGAACTGAGGCGGTTGTGGGAGG
GACAGCTGGAGAGGGTAGGGTATGGGGAGCAGAACACGATTTTGCTCGAC
AACCACGTGGAGAAGTTCGAGGGGAATCCAGTGGGGACGTGCGTGGTGGT
GCCCGAGTACGAGGACGGGGCCGAGCCGGAAGACGGGGTGTTGAGCTTGG
AGGGGGAGCTCGTCGGGCACCTGCGACGGATGGCGGTGGCGCCCGAGGGG
GGGAGAGGGGAGGAGGGGGGGGGGGGAGTGCGGGATATGTGCGGAGGACG
AAAAGTGTTTATTTCCCGGAGAAGCACCCAGATCCGCCGGTGGACGTGGC
GGCCATGGTCAAGGAGGAGGTGTTGA
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protein sequence of NO08G01740.1

>NO08G01740.1-protein ID=NO08G01740.1-protein|Name=NO08G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MGGGRGPDDGSRKGKANSNSSCSEEGGEGGRQDRRNMWVIAARSGSALRR
GGGRGEGGREGGRVYQGAVYAAHEVHGIFIYFGMVVKEEREGRDGGVEGG
AIRFFEASGRITRSGLPALVLEDLEKKAEEGRRGGREGGGIRRETLVEVR
VKSVERPLGGKPKVELVLVPRRKLLILDLNGVLFNRYPVGDARREGGRGG
WEGGRVIKRPGCDDFLEFCFAHFDVAAWSCCRKETLEMEIFNGREKELVF
VNWGMHSTNLWPRHSAVSKDKPLFLKELRRLWEGQLERVGYGEQNTILLD
NHVEKFEGNPVGTCVVVPEYEDGAEPEDGVLSLEGELVGHLRRMAVAPEG
GRGEEGGGGVRDMCGGRKVFISRRSTQIRRWTWRPWSRRRC*
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mRNA from alignment at chr8:541712..542887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01740.1 ID=NO08G01740.1|Name=NO08G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp|location=Sequence derived from alignment at chr8:541712..542887- (Nannochloropsis oceanica)
ATGGGAGGAGGACGAGGACCTGATGATGGATCAAGGAAAGGGAAGGCCAA
CAGCAACAGCAGCTGCAGTGAAGAGGGAGGAGAGGGAGGGAGGCAGGATC
GAAGGAACATGTGGGTTATTGCGGCGCGGAGTGGATCTGCCCTTAGACGA
GGTGGAGGTCGGGGGGAGGGAGGGAGGGAGGGAGGGCGGGTGTACCAAGG
GGCCGTGTATGCGGCGCATGAAGTGCACGGAATATTTATTTACTTTGGAA
TGGTAGTGAAAGAGGAGAGGGAGGGGAGAGACGGAGGGGTAGAAGGAGGA
GCCATTAGATTTTTTGAGGCCAGCGGGCGAATAACGCGAAGCGGATTGCC
GGCATTAGTGTTGGAGGACCTCGAAAAAAAGGCGGAGGAGGGGAGGAGGG
GAGGGAGGGAGGGAGGAGGGATAAGGAGGGAAACTTTGGTGGAGGTGAGG
GTGAAGAGCGTGGAGAGGCCGTTGGGGGGAAAACCGAAGGTGGAGCTGGT
GCTGGTCCCGAGGAGGAAGTTGCTGATATTGGACTTGAATGGGGTGTTAT
TTAATCGCTACCCCGTGGGGGATGCTCGACGGGAAGGAGGAAGAGGAGGT
TGGGAGGGAGGACGGGTGATAAAACGGCCGGGTTGCGACGATTTCTTGGA
GTTTTGTTTCGCGCACTTTGATGTGGCGGCTTGGAGCTGCTGTAGGAAGG
AGACGCTGGAGATGGAGATTTTCAACGGGAGAGAGAAAGAGTTGGTGTTT
GTGAACTGGGGCATGCACAGCACGAATTTATGGCCGAGACACTCGGCGGT
TAGTAAAGACAAGCCTTTATTTCTGAAAGAACTGAGGCGGTTGTGGGAGG
GACAGCTGGAGAGGGTAGGGTATGGGGAGCAGAACACGATTTTGCTCGAC
AACCACGTGGAGAAGTTCGAGGGGAATCCAGTGGGGACGTGCGTGGTGGT
GCCCGAGTACGAGGACGGGGCCGAGCCGGAAGACGGGGTGTTGAGCTTGG
AGGGGGAGCTCGTCGGGCACCTGCGACGGATGGCGGTGGCGCCCGAGGGG
GGGAGAGGGGAGGAGGGGGGGGGGGGAGTGCGGGATATGTGCGGAGGACG
AAAAGTGTTTATTTCCCGGAGAAGCACCCAGATCCGCCGGTGGACGTGGC
GGCCATGGTCAAGGAGGAGGTGTTGA
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Coding sequence (CDS) from alignment at chr8:541712..542887-

>NO08G01740.1 ID=NO08G01740.1|Name=NO08G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr8:541712..542887- (Nannochloropsis oceanica)
ATGGGAGGAGGACGAGGACCTGATGATGGATCAAGGAAAGGGAAGGCCAA
CAGCAACAGCAGCTGCAGTGAAGAGGGAGGAGAGGGAGGGAGGCAGGATC
GAAGGAACATGTGGGTTATTGCGGCGCGGAGTGGATCTGCCCTTAGACGA
GGTGGAGGTCGGGGGGAGGGAGGGAGGGAGGGAGGGCGGGTGTACCAAGG
GGCCGTGTATGCGGCGCATGAAGTGCACGGAATATTTATTTACTTTGGAA
TGGTAGTGAAAGAGGAGAGGGAGGGGAGAGACGGAGGGGTAGAAGGAGGA
GCCATTAGATTTTTTGAGGCCAGCGGGCGAATAACGCGAAGCGGATTGCC
GGCATTAGTGTTGGAGGACCTCGAAAAAAAGGCGGAGGAGGGGAGGAGGG
GAGGGAGGGAGGGAGGAGGGATAAGGAGGGAAACTTTGGTGGAGGTGAGG
GTGAAGAGCGTGGAGAGGCCGTTGGGGGGAAAACCGAAGGTGGAGCTGGT
GCTGGTCCCGAGGAGGAAGTTGCTGATATTGGACTTGAATGGGGTGTTAT
TTAATCGCTACCCCGTGGGGGATGCTCGACGGGAAGGAGGAAGAGGAGGT
TGGGAGGGAGGACGGGTGATAAAACGGCCGGGTTGCGACGATTTCTTGGA
GTTTTGTTTCGCGCACTTTGATGTGGCGGCTTGGAGCTGCTGTAGGAAGG
AGACGCTGGAGATGGAGATTTTCAACGGGAGAGAGAAAGAGTTGGTGTTT
GTGAACTGGGGCATGCACAGCACGAATTTATGGCCGAGACACTCGGCGGT
TAGTAAAGACAAGCCTTTATTTCTGAAAGAACTGAGGCGGTTGTGGGAGG
GACAGCTGGAGAGGGTAGGGTATGGGGAGCAGAACACGATTTTGCTCGAC
AACCACGTGGAGAAGTTCGAGGGGAATCCAGTGGGGACGTGCGTGGTGGT
GCCCGAGTACGAGGACGGGGCCGAGCCGGAAGACGGGGTGTTGAGCTTGG
AGGGGGAGCTCGTCGGGCACCTGCGACGGATGGCGGTGGCGCCCGAGGGG
GGGAGAGGGGAGGAGGGGGGGGGGGGAGTGCGGGATATGTGCGGAGGACG
AAAAGTGTTTATTTCCCGGAGAAGCACCCAGATCCGCCGGTGGACGTGGC
GGCCATGGTCAAGGAGGAGGTGTTGA
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Synonyms
Publications