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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:340050..343506 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01080.2 vs.
Match: EWM26589.1 (magnesium and cobalt transport protein [Nannochloropsis gaditana]) HSP 1 Score: 730.7 bits (1885), Expect = 3.100e-207 Identity = 398/543 (73.30%), Postives = 424/543 (78.08%), Query Frame = 0
Query: 1 MEIVKFSSVDYNEKRYAAEIPVADTYAFFTAHRDPKDFMMRWLHLEGIDRLTILRFAVKYSLHPLCVEDALKLEDQQPKVNKYGSHYFIVMPFFRLARESREALDALRQQRRRNTGIIKSTAEAAAALA----GARREEGREG-GKCNRKGKKPAGIGEGWSDFHFKVEWSKLCIFMAGRPSYDTIISLHSKWETFNNETDEMLWGEGG---------------------AARAPVGR-----GRGEAEGLRSRRGGGREGGRDVSSSSTNSSSGEEGLIARDFVAASHYHHHHNNHYFHPYGGCTAIPPSNGCGGCPSSSSSSSSPRGHIFENLVAALKVDYSVLRQGNSKHLLYRILDEAVDYLLPIARAYRTRVRLFQAHLHRNESKFTKEQMRLVLGMKSELQRLQRRIRPMKAVVRHLMDDEQIGHDMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLRDQRTNEVLYTLTVVTTMFVPLQFLTGVYGMNFVNAEGHPTMPELLWPRGYLFFWCMAATLFSVSLYFFRTHLSY 513
ME+VKFSS+DYNEK Y+AEIPVADTYAFFT HRDPKDFMMRWLHLEG+DRLTILRFA+KYSLHPLCVEDALKLEDQQPKVNKYG HYFIVMPFFRL RESREAL LRQQRRR + IIKSTAEAAA LA G R G +G G+ + ++ G E WSDFHF+VEWSKLCIFMAG PSYDT+ISLH KWETFN+ETDEML GE G A+ A G G GLR RRGGGRE G + SGE+GLI D +AASHY HH + G T+ P +G GG SS S +GHIFE LV ALKVDYS LRQGNSKHLLYRILDE VD+L+PIA+AYRTRVRLFQA LHRNES F KE MRLVLGMKSELQRLQRRIRPM AVVRHLMDDEQIG DMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLRDQRTNEVLYTLTVVTTMFVPLQFLTGVYGMNF+N EG PTMPELLWPRGYLFFWCMAATLFSVS YFFR HLSY
Sbjct: 323 MEVVKFSSLDYNEKTYSAEIPVADTYAFFTTHRDPKDFMMRWLHLEGLDRLTILRFAIKYSLHPLCVEDALKLEDQQPKVNKYGCHYFIVMPFFRLTRESREALKTLRQQRRRYSSIIKSTAEAAALLAHGATGQRERGGLQGSGQASPNDRRHKG-KESWSDFHFRVEWSKLCIFMAGAPSYDTLISLHGKWETFNSETDEMLRGEEGPGGKKGAGEEWKGMGSRTESSASMAKGGNSSFVGGSASTHGLRFRRGGGREAG--------DLDSGEDGLIKDDSMAASHYEHHVRYGWDGQESGSTS--PYSGVGGANSSFS-----QGHIFERLVTALKVDYSTLRQGNSKHLLYRILDEVVDFLIPIAQAYRTRVRLFQAQLHRNESTFKKEHMRLVLGMKSELQRLQRRIRPMTAVVRHLMDDEQIGQDMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLRDQRTNEVLYTLTVVTTMFVPLQFLTGVYGMNFMNKEGEPTMPELLWPRGYLFFWCMAATLFSVSWYFFRRHLSY 849
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01080.2 ID=NO08G01080.2|Name=NO08G01080.2|organism=Nannochloropsis oceanica|type=mRNA|length=2313bp ACGGGGCAAGGAGTGAGCGAGTCTATTATGGTGGCACCGGCGCCCAGATT GCTGTCGGGATTGGGGGGGGGGATCACACGTGTAGTAATGATATGTGTGT TACCTTGGGAGGAGGAGGGCTAGCAGGAGGGGCAGGAGCAGGGGGGAGGG AGGGGAGGGAGGGCGGATAACGCCGGGGTTGCCCTACCCTGATTACGGAA CTGCAACTCCTGCTTATTTGCCGATAGATGGCCAAGAAGAGGAGGGAGGG AGGGAGGGAAGGAGGGAAAGGGGAGGCAATGGTCGGATGGAGATAGTGAA GTTCTCAAGCGTGGACTACAACGAGAAGAGGTATGCCGCCGAGATTCCTG TGGCGGACACGTACGCGTTCTTCACGGCCCATCGAGACCCCAAGGACTTC ATGATGCGCTGGCTACACTTGGAGGGGATCGATAGGTTGACCATCCTTCG TTTTGCGGTCAAGTACTCTCTCCACCCTCTCTGTGTCGAAGACGCCCTCA AGCTCGAGGACCAGCAGCCCAAGGTGAACAAATACGGCTCCCACTACTTC ATAGTCATGCCTTTCTTCCGGTTGGCGAGGGAGAGTCGGGAGGCGCTTGA CGCCCTGCGGCAGCAGCGACGTCGTAACACGGGGATTATCAAAAGCACTG CTGAAGCCGCCGCGGCTTTAGCGGGGGCTCGGCGGGAGGAAGGAAGGGAG GGAGGAAAGTGTAATCGAAAGGGGAAGAAGCCGGCGGGCATAGGGGAGGG ATGGTCCGATTTCCACTTTAAGGTCGAATGGTCCAAGTTGTGTATTTTCA TGGCCGGTCGTCCCAGCTACGACACCATTATCTCCCTGCACAGCAAGTGG GAGACGTTCAACAACGAGACGGACGAGATGCTCTGGGGGGAGGGAGGGGC GGCCAGGGCGCCAGTGGGGAGAGGGAGGGGAGAAGCGGAGGGATTGCGTT CGAGAAGGGGAGGAGGAAGGGAGGGAGGGAGGGATGTGTCAAGTAGTAGC ACGAACAGCAGCAGTGGGGAGGAAGGGCTGATTGCAAGAGATTTTGTGGC AGCTTCGCATTACCACCATCATCATAACAATCATTACTTTCACCCTTACG GTGGGTGTACGGCCATTCCCCCCTCCAACGGTTGCGGAGGCTGTCCGTCC TCCTCCTCCTCTTCCTCCTCCCCCCGAGGACATATCTTTGAGAATCTGGT TGCGGCTCTCAAGGTTGACTACTCGGTCTTGCGACAAGGGAACAGCAAGC ACCTGCTCTATCGCATCTTGGATGAGGCAGTGGACTATTTATTGCCCATT GCCCGCGCGTACCGAACGAGGGTCCGATTATTTCAGGCTCACTTGCATCG GAACGAGAGCAAGTTCACCAAGGAACAAATGCGCTTGGTCCTGGGCATGA AGAGCGAGCTACAGCGGCTGCAGCGACGCATCCGACCCATGAAAGCGGTG GTGCGGCACCTGATGGATGATGAACAGATAGGGCACGACATGAAAGTGTA CTTGGAAGACGTGCTGGACCACGTGGTGAGGGGGCTGGAGGAGATCGGTG GGTGCATCGAAATGTGCGACTCGACAAAGGAGGAGTTCAAGAGCTTGCGG GACCAACGGACAAACGAGGTGCTCTACACGCTGACGGTGGTGACGACCAT GTTTGTGCCCCTCCAGTTTCTAACTGGAGTGTATGGGATGAATTTCGTCA ATGCTGAAGGGCATCCGACCATGCCGGAGCTGCTATGGCCCCGGGGCTAT CTGTTCTTTTGGTGCATGGCCGCGACTCTTTTTTCCGTCTCCTTGTACTT TTTCAGGACGCACCTGTCTTACTCTTGAGCGGGGGGAAAACGGGGGCAGT GAGGGAGGGAGGGAATATAGCACGGATACCTCTTGTTTCCTTGATGCCCT TTGATCTTTAGGATGTAAATTATGGAAGGGAAGGGGGAGGGGAGGGAGAT ACCTAAACGAGGTAAGGGAGGAGAACATTTATTTTTACAAATGACGGTTC GCAGGGATTGTAGACGGCCGCTGGAGGGGGACCGGCGAGAAAGCGAGAAA GAGAAAGAGAGAAAGACTTGGTCGAGGAAGAAGTGTGAAAGCGAAAAATA CATGCATTTGGGCGGCAAGCTAAGTAAGACACTGCCTACCTTCACATGCA ACGGTCGAAAGAAAAATGAAGGAGCAGGACGGGGGAAATACGTTACACGT GATCACAGGCATAGGCGGTCAAAAGTGGGGACTTCCGTGAGGCTAAGGAT CAGCTTTCAAGATGGGGGGATCAAAAGCAAAAAGCGCGAACAAAGCACCA GTAGCAATTCGAG back to topprotein sequence of NO08G01080.2 >NO08G01080.2-protein ID=NO08G01080.2-protein|Name=NO08G01080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp MEIVKFSSVDYNEKRYAAEIPVADTYAFFTAHRDPKDFMMRWLHLEGIDR LTILRFAVKYSLHPLCVEDALKLEDQQPKVNKYGSHYFIVMPFFRLARES REALDALRQQRRRNTGIIKSTAEAAAALAGARREEGREGGKCNRKGKKPA GIGEGWSDFHFKVEWSKLCIFMAGRPSYDTIISLHSKWETFNNETDEMLW GEGGAARAPVGRGRGEAEGLRSRRGGGREGGRDVSSSSTNSSSGEEGLIA RDFVAASHYHHHHNNHYFHPYGGCTAIPPSNGCGGCPSSSSSSSSPRGHI FENLVAALKVDYSVLRQGNSKHLLYRILDEAVDYLLPIARAYRTRVRLFQ AHLHRNESKFTKEQMRLVLGMKSELQRLQRRIRPMKAVVRHLMDDEQIGH DMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLRDQRTNEVLYTLT VVTTMFVPLQFLTGVYGMNFVNAEGHPTMPELLWPRGYLFFWCMAATLFS VSLYFFRTHLSYS* back to topmRNA from alignment at chr8:340050..343506+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01080.2 ID=NO08G01080.2|Name=NO08G01080.2|organism=Nannochloropsis oceanica|type=mRNA|length=3457bp|location=Sequence derived from alignment at chr8:340050..343506+ (Nannochloropsis oceanica) ACGGGGCAAGGAGTGAGCGAGTCTATTATGGTGGCACCGGCGCCCAGATT
GCTGTCGGGATTGGGGGGGGGGATCACACGTGTAGTAATGATATGTGTGT
TACCTTGGGAGGAGGAGGGCTAGCAGGAGGGGCAGGAGCAGGGGGGAGGG
AGGGGAGGGAGGGCGGATAACGCCGGGGTTGCCCTACCCTGATTACGGAA
CTGCAACTCCTGCTTATTTGCCGATAGATGGCCAAGAAGAGGAGGGAGGG
AGGGAGGGAAGGAGGGAAAGGGGAGGCAATGGTCGGATGGAGATAGTGAA
GTTCTCAAGCGTGGACTACAACGAGAAGAGGTATGCCGCCGAGATTCCTG
TGGCGGACACGTACGCGTTCTTCACGGCCCATCGAGACCCCAAGGACTTC
ATGATGCGCTGGCTACACTTGGAGGGGATCGATAGGTACGTCATTTGTAC
CTTCCCTTGTCCCCCCCTCCCCCCTCCCGACCCGTTTCTCTTCCGCCTTT
CTTTCCAGTCGGACGTGTATATTTTCTTTCATTCCCACACATCACTTTGA
ATGAGGGATCTTCTGATGCGGCTTTCGTTACCGAATGTCTGTCAATATTC
TCAACCCTTCCTTCCTGCCTTCCTCACCCCCTCCCTCCCCCTCTTTCCCT
CCTCACACCACCACCCGCAGGTTGACCATCCTTCGTTTTGCGGTCAAGTA
CTCTCTCCACCCTCTCTGTGTCGAAGACGCCCTCAAGCTCGAGGACCAGC
AGCCCAAGGTGAACAAATACGGCTCCCACTACTTCATAGTCATGCCTTTC
TTCCGGTTGGCGAGGGAGAGTCGGGAGGTATATTGCGAACGGGGGGGGAG
GAAGGAAGGGAGGGAGGGAGGAAGCGAGGGAGAGAATAAGATTGCATGCA
TTCATATATATATCCCTGTTTCCTGATATTGAAGGGCCTTATTCTAAGAA
GCATGACCAGCGCGGTTGCCTCGCGGATGCCCCACCGCCAGCCAACTCCT
CCCCCTCTCCCTCCCTCCCTCTTGCCCTCCCTCCCTCCCTCCCTCTTCCA
GGCGCTTGACGCCCTGCGGCAGCAGCGACGTCGTAACACGGGGATTATCA
AAAGCACTGCTGAAGCCGCCGCGGCTTTAGCGGGGGCTCGGCGGGAGGAA
GGAAGGGAGGGAGGAAAGTGTAATCGAAAGGGGAAGAAGCCGGCGGGCAT
AGGGGAGGGATGGTCCGATTTCCACTTTAAGGTCGAATGGTCCAAGTTGT
GTATTTTCATGGCCGGTCGTCCCAGCTACGACACCATTATCTCCCTGCAC
AGCAAGTGGGAGACGTTCAACAACGAGACGGACGAGATGCTCTGGGGGGA
GGGAGGGGGTGGGGAGTGGGAGGGAGGAAGGGACGGAGAGGTTGGTAGAG
GAAGGGGAAGGAGGGGGGGATGGGGAGTCGGTCGGCAAGCACGGCATCCT
TGTCGGCGGCAGCGGCCAGGGCGCCAGTGGGGAGAGGGAGGGGAGAAGCG
GAGGGATTGCGTTCGAGAAGGGGAGGAGGAAGGGAGGGAGGGAGGGATGT
GTCAAGTAGTAGCACGAACAGCAGCAGTGGGGAGGAAGGGCTGATTGCAA
GAGATTTTGTGGCAGCTTCGCATTACCACCATCATCATAACAATCATTAC
TTTCACCCTTACGGTGGGTGTACGGCCATTCCCCCCTCCAACGGTTGCGG
AGGCTGTCCGTCCTCCTCCTCCTCTTCCTCCTCCCCCCGAGGACATATCT
TTGAGAATCTGGTTGCGGCTCTCAAGGTTGACTACTCGGTCTTGCGACAA
GGGAACAGCAAGCACCTGCTCTATCGCATCTTGGATGAGGCAGTGGACTA
TTTATTGCCCATTGCCCGCGCGTACCGAACGAGGGTCCGATTATTTCAGG
CTCACTTGCATCGGAACGAGAGCAAGTTCACCAAGGTGAGCCCATGCAAG
ACATTCCCTCCTTCGTTCCCTCCCTCCGCCTCTTCCTTCACAAGAACACT
CCTCATGATAGTCTGGATTCAACATCTTGTCAAAGCGCTGTCCGACTGCT
TTCTCTCAACCCTCCCTCCCTCTCTCCCTCCCCTCGTAGGAACAAATGCG
CTTGGTCCTGGGCATGAAGAGCGAGCTACAGCGGCTGCAGCGACGCATCC
GACCCATGAAAGCGGTGGTGCGGCACCTGATGGATGATGAACAGATAGGG
CACGACATGAAAGTGTACTTGGAAGACGTGCTGGACCACGTGGTGAGGGG
GCTGGAGGAGATCGGTGGGTGCATCGAAATGTGCGACTCGACAAAGGAGG
AGTTCAAGAGCTTGCGGGTAAGGACGGATGGGAGGAGGGGAGGAGGGTGG
AGGATGTATGTGCGTGTGCATCAGTGGTTGGGCAATTTTCCAGATAATGT
CGTGCGGGGCTTGGTGGGGGGAGGGTATACTGAGAGAGATGTGGCTCGAG
GAAGAGTTTTCGGCTACGGTTACGTCCTTCATACTTTCCTTCCTCCTACG
CTCCTTTCCTCCCTCAATGAATTGAATGTTTTCGCTTTCATCATCCCTCC
CTCCTGACACCATCTCCTTTCCTCCCTTTATACTGACTGCTCACGCCATG
GCTAGGACCAACGGACAAACGAGGTGCTCTACACGCTGACGGTGGTGACG
ACCATGTTTGTGCCCCTCCAGTTTCTAACTGGAGTGTATGGGGTACGTGC
CTGAAGGAATGATGGAGGACGGGAGGGCTAGAAAGAGAGACTTTTCCTTC
CCTTCCCATGGCCAACCCACACGCTTACCACGTCCCTCCCTCCCTGTCTC
TTCCACGCTCGCTTCGTATTGAACCAAATAGATGAATTTCGTCAATGCTG
AAGGGCATCCGACCATGCCGGAGCTGCTATGGCCCCGGGGCTATCTGTTC
TTTTGGTGCATGGCCGCGACTCTTTTTTCCGTCTCCTTGTACTTTTTCAG
GACGCACCTGTCTTACTCTTGAGCGGGGGGAAAACGGGGGCAGTGAGGGA
GGGAGGGAATATAGCACGGATACCTCTTGTTTCCTTGATGCCCTTTGATC
TTTAGGATGTAAATTATGGAAGGGAAGGGGGAGGGGAGGGAGATACCTAA
ACGAGGTAAGGGAGGAGAACATTTATTTTTACAAATGACGGTTCGCAGGG
ATTGTAGACGGCCGCTGGAGGGGGACCGGCGAGAAAGCGAGAAAGAGAAA
GAGAGAAAGACTTGGTCGAGGAAGAAGTGTGAAAGCGAAAAATACATGCA
TTTGGGCGGCAAGCTAAGTAAGACACTGCCTACCTTCACATGCAACGGTC
GAAAGAAAAATGAAGGAGCAGGACGGGGGAAATACGTTACACGTGATCAC
AGGCATAGGCGGTCAAAAGTGGGGACTTCCGTGAGGCTAAGGATCAGCTT
TCAAGATGGGGGGATCAAAAGCAAAAAGCGCGAACAAAGCACCAGTAGCA
ATTCGAG back to topCoding sequence (CDS) from alignment at chr8:340050..343506+ >NO08G01080.2 ID=NO08G01080.2|Name=NO08G01080.2|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr8:340050..343506+ (Nannochloropsis oceanica) ATGGAGATAGTGAAGTTCTCAAGCGTGGACTACAACGAGAAGAGGTATGC CGCCGAGATTCCTGTGGCGGACACGTACGCGTTCTTCACGGCCCATCGAG ACCCCAAGGACTTCATGATGCGCTGGCTACACTTGGAGGGGATCGATAGG TTGACCATCCTTCGTTTTGCGGTCAAGTACTCTCTCCACCCTCTCTGTGT CGAAGACGCCCTCAAGCTCGAGGACCAGCAGCCCAAGGTGAACAAATACG GCTCCCACTACTTCATAGTCATGCCTTTCTTCCGGTTGGCGAGGGAGAGT CGGGAGGCGCTTGACGCCCTGCGGCAGCAGCGACGTCGTAACACGGGGAT TATCAAAAGCACTGCTGAAGCCGCCGCGGCTTTAGCGGGGGCTCGGCGGG AGGAAGGAAGGGAGGGAGGAAAGTGTAATCGAAAGGGGAAGAAGCCGGCG GGCATAGGGGAGGGATGGTCCGATTTCCACTTTAAGGTCGAATGGTCCAA GTTGTGTATTTTCATGGCCGGTCGTCCCAGCTACGACACCATTATCTCCC TGCACAGCAAGTGGGAGACGTTCAACAACGAGACGGACGAGATGCTCTGG GGGGAGGGAGGGGCGGCCAGGGCGCCAGTGGGGAGAGGGAGGGGAGAAGC GGAGGGATTGCGTTCGAGAAGGGGAGGAGGAAGGGAGGGAGGGAGGGATG TGTCAAGTAGTAGCACGAACAGCAGCAGTGGGGAGGAAGGGCTGATTGCA AGAGATTTTGTGGCAGCTTCGCATTACCACCATCATCATAACAATCATTA CTTTCACCCTTACGGTGGGTGTACGGCCATTCCCCCCTCCAACGGTTGCG GAGGCTGTCCGTCCTCCTCCTCCTCTTCCTCCTCCCCCCGAGGACATATC TTTGAGAATCTGGTTGCGGCTCTCAAGGTTGACTACTCGGTCTTGCGACA AGGGAACAGCAAGCACCTGCTCTATCGCATCTTGGATGAGGCAGTGGACT ATTTATTGCCCATTGCCCGCGCGTACCGAACGAGGGTCCGATTATTTCAG GCTCACTTGCATCGGAACGAGAGCAAGTTCACCAAGGAACAAATGCGCTT GGTCCTGGGCATGAAGAGCGAGCTACAGCGGCTGCAGCGACGCATCCGAC CCATGAAAGCGGTGGTGCGGCACCTGATGGATGATGAACAGATAGGGCAC GACATGAAAGTGTACTTGGAAGACGTGCTGGACCACGTGGTGAGGGGGCT GGAGGAGATCGGTGGGTGCATCGAAATGTGCGACTCGACAAAGGAGGAGT TCAAGAGCTTGCGGGACCAACGGACAAACGAGGTGCTCTACACGCTGACG GTGGTGACGACCATGTTTGTGCCCCTCCAGTTTCTAACTGGAGTGTATGG GATGAATTTCGTCAATGCTGAAGGGCATCCGACCATGCCGGAGCTGCTAT GGCCCCGGGGCTATCTGTTCTTTTGGTGCATGGCCGCGACTCTTTTTTCC GTCTCCTTGTACTTTTTCAGGACGCACCTGTCTTACTCTTGA back to top
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