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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:340050..343021 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01080.1 vs.
Match: EWM26589.1 (magnesium and cobalt transport protein [Nannochloropsis gaditana]) HSP 1 Score: 533.5 bits (1373), Expect = 6.600e-148 Identity = 305/442 (69.00%), Postives = 327/442 (73.98%), Query Frame = 0
Query: 52 QALDALRQQRRRNTGIIKSTAEAAAALA----GARREEGREG-GKCNRKGKKPAGIGEGWSDFHFKVEWSKLCIFMAGRPSYDTIISLHSKWETFNNETDEMLWGEGG---------------------AARAPVGR-----GRGEAEGLRSRRGGGREGGRDVSSSSTNSSSGEEGLIARDFVAASHYHHHHNNHYFHPYGGCTAIPPSNGCGGCPSSSSSSSSPRGHIFENLVAALKVDYSVLRQGNSKHLLYRILDEAVDYLLPIARAYRTRVRLFQAHLHRNESKFTKEQMRLVLGMKSELQRLQRRIRPMKAVVRHLMDDEQIGHDMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLRDQRTNEVLYTLTVVTTMFVPLQFLTGVYGMNFVNAEGHPTMPELLWPRGYLFFWCMAATLFSVSLYFFRTHLSY 463
+AL LRQQRRR + IIKSTAEAAA LA G R G +G G+ + ++ G E WSDFHF+VEWSKLCIFMAG PSYDT+ISLH KWETFN+ETDEML GE G A+ A G G GLR RRGGGRE G + SGE+GLI D +AASHY HH + G T+ P +G GG SS S +GHIFE LV ALKVDYS LRQGNSKHLLYRILDE VD+L+PIA+AYRTRVRLFQA LHRNES F KE MRLVLGMKSELQRLQRRIRPM AVVRHLMDDEQIG DMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLRDQRTNEVLYTLTVVTTMFVPLQFLTGVYGMNF+N EG PTMPELLWPRGYLFFWCMAATLFSVS YFFR HLSY
Sbjct: 424 EALKTLRQQRRRYSSIIKSTAEAAALLAHGATGQRERGGLQGSGQASPNDRRHKG-KESWSDFHFRVEWSKLCIFMAGAPSYDTLISLHGKWETFNSETDEMLRGEEGPGGKKGAGEEWKGMGSRTESSASMAKGGNSSFVGGSASTHGLRFRRGGGREAG--------DLDSGEDGLIKDDSMAASHYEHHVRYGWDGQESGSTS--PYSGVGGANSSFS-----QGHIFERLVTALKVDYSTLRQGNSKHLLYRILDEVVDFLIPIAQAYRTRVRLFQAQLHRNESTFKKEHMRLVLGMKSELQRLQRRIRPMTAVVRHLMDDEQIGQDMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLRDQRTNEVLYTLTVVTTMFVPLQFLTGVYGMNFMNKEGEPTMPELLWPRGYLFFWCMAATLFSVSWYFFRRHLSY 849
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01080.1 ID=NO08G01080.1|Name=NO08G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp
ACGGGGCAAGGAGTGAGCGAGTCTATTATGGTGGCACCGGCGCCCAGATT
GCTGTCGGGATTGGGGGGGGGGATCACACGTGTAGTAATGATATGTGTGT
TACCTTGGGAGGAGGAGGGCTAGCAGGAGGGGCAGGAGCAGGGGGGAGGG
AGGGGAGGGAGGGCGGATAACGCCGGGGTTGCCCTACCCTGATTACGGAA
CTGCAACTCCTGCTTATTTGCCGATAGATGGCCAAGAAGAGGAGGGAGGG
AGGGAGGGAAGGAGGGAAAGGGGAGGCAATGGTCGGATGGAGATAGTGAA
GTTCTCAAGCGTGGACTACAACGAGAAGAGGTATGCCGCCGAGATTCCTG
TGGCGGACACGTACGCGTTCTTCACGGCCCATCGAGACCCCAAGGACTTC
ATGATGCGCTGGCTACACTTGGAGGGGATCGATAGGTTGACCATCCTTCG
TTTTGCGGTCAAGTACTCTCTCCACCCTCTCTGTGTCGAAGACGCCCTCA
AGCTCGAGGACCAGCAGCCCAAGGTGAACAAATACGGCTCCCACTACTTC
ATAGTCATGCCTTTCTTCCGGTTGGCGAGGGAGAGTCGGGAGGTATATTG
CGAACGGGGGGGGAGGAAGGAAGGGAGGGAGGGAGGAAGCGAGGGAGAGA
ATAAGATTGCATGCATTCATATATATATCCCTGTTTCCTGATATTGAAGG
GCCTTATTCTAAGAAGCATGACCAGCGCGGTTGCCTCGCGGATGCCCCAC
CGCCAGCCAACTCCTCCCCCTCTCCCTCCCTCCCTCTTGCCCTCCCTCCC
TCCCTCCCTCTTCCAGGCGCTTGACGCCCTGCGGCAGCAGCGACGTCGTA
ACACGGGGATTATCAAAAGCACTGCTGAAGCCGCCGCGGCTTTAGCGGGG
GCTCGGCGGGAGGAAGGAAGGGAGGGAGGAAAGTGTAATCGAAAGGGGAA
GAAGCCGGCGGGCATAGGGGAGGGATGGTCCGATTTCCACTTTAAGGTCG
AATGGTCCAAGTTGTGTATTTTCATGGCCGGTCGTCCCAGCTACGACACC
ATTATCTCCCTGCACAGCAAGTGGGAGACGTTCAACAACGAGACGGACGA
GATGCTCTGGGGGGAGGGAGGGGCGGCCAGGGCGCCAGTGGGGAGAGGGA
GGGGAGAAGCGGAGGGATTGCGTTCGAGAAGGGGAGGAGGAAGGGAGGGA
GGGAGGGATGTGTCAAGTAGTAGCACGAACAGCAGCAGTGGGGAGGAAGG
GCTGATTGCAAGAGATTTTGTGGCAGCTTCGCATTACCACCATCATCATA
ACAATCATTACTTTCACCCTTACGGTGGGTGTACGGCCATTCCCCCCTCC
AACGGTTGCGGAGGCTGTCCGTCCTCCTCCTCCTCTTCCTCCTCCCCCCG
AGGACATATCTTTGAGAATCTGGTTGCGGCTCTCAAGGTTGACTACTCGG
TCTTGCGACAAGGGAACAGCAAGCACCTGCTCTATCGCATCTTGGATGAG
GCAGTGGACTATTTATTGCCCATTGCCCGCGCGTACCGAACGAGGGTCCG
ATTATTTCAGGCTCACTTGCATCGGAACGAGAGCAAGTTCACCAAGGAAC
AAATGCGCTTGGTCCTGGGCATGAAGAGCGAGCTACAGCGGCTGCAGCGA
CGCATCCGACCCATGAAAGCGGTGGTGCGGCACCTGATGGATGATGAACA
GATAGGGCACGACATGAAAGTGTACTTGGAAGACGTGCTGGACCACGTGG
TGAGGGGGCTGGAGGAGATCGGTGGGTGCATCGAAATGTGCGACTCGACA
AAGGAGGAGTTCAAGAGCTTGCGGGACCAACGGACAAACGAGGTGCTCTA
CACGCTGACGGTGGTGACGACCATGTTTGTGCCCCTCCAGTTTCTAACTG
GAGTGTATGGGATGAATTTCGTCAATGCTGAAGGGCATCCGACCATGCCG
GAGCTGCTATGGCCCCGGGGCTATCTGTTCTTTTGGTGCATGGCCGCGAC
TCTTTTTTCCGTCTCCTTGTACTTTTTCAGGACGCACCTGTCTTACTCTT
GA back to topprotein sequence of NO08G01080.1 >NO08G01080.1-protein ID=NO08G01080.1-protein|Name=NO08G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MHSYIYPCFLILKGLILRSMTSAVASRMPHRQPTPPPLPPSLLPSLPPSL
FQALDALRQQRRRNTGIIKSTAEAAAALAGARREEGREGGKCNRKGKKPA
GIGEGWSDFHFKVEWSKLCIFMAGRPSYDTIISLHSKWETFNNETDEMLW
GEGGAARAPVGRGRGEAEGLRSRRGGGREGGRDVSSSSTNSSSGEEGLIA
RDFVAASHYHHHHNNHYFHPYGGCTAIPPSNGCGGCPSSSSSSSSPRGHI
FENLVAALKVDYSVLRQGNSKHLLYRILDEAVDYLLPIARAYRTRVRLFQ
AHLHRNESKFTKEQMRLVLGMKSELQRLQRRIRPMKAVVRHLMDDEQIGH
DMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLRDQRTNEVLYTLT
VVTTMFVPLQFLTGVYGMNFVNAEGHPTMPELLWPRGYLFFWCMAATLFS
VSLYFFRTHLSYS* back to topmRNA from alignment at chr8:340050..343021+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01080.1 ID=NO08G01080.1|Name=NO08G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2972bp|location=Sequence derived from alignment at chr8:340050..343021+ (Nannochloropsis oceanica)
ACGGGGCAAGGAGTGAGCGAGTCTATTATGGTGGCACCGGCGCCCAGATT
GCTGTCGGGATTGGGGGGGGGGATCACACGTGTAGTAATGATATGTGTGT
TACCTTGGGAGGAGGAGGGCTAGCAGGAGGGGCAGGAGCAGGGGGGAGGG
AGGGGAGGGAGGGCGGATAACGCCGGGGTTGCCCTACCCTGATTACGGAA
CTGCAACTCCTGCTTATTTGCCGATAGATGGCCAAGAAGAGGAGGGAGGG
AGGGAGGGAAGGAGGGAAAGGGGAGGCAATGGTCGGATGGAGATAGTGAA
GTTCTCAAGCGTGGACTACAACGAGAAGAGGTATGCCGCCGAGATTCCTG
TGGCGGACACGTACGCGTTCTTCACGGCCCATCGAGACCCCAAGGACTTC
ATGATGCGCTGGCTACACTTGGAGGGGATCGATAGGTACGTCATTTGTAC
CTTCCCTTGTCCCCCCCTCCCCCCTCCCGACCCGTTTCTCTTCCGCCTTT
CTTTCCAGTCGGACGTGTATATTTTCTTTCATTCCCACACATCACTTTGA
ATGAGGGATCTTCTGATGCGGCTTTCGTTACCGAATGTCTGTCAATATTC
TCAACCCTTCCTTCCTGCCTTCCTCACCCCCTCCCTCCCCCTCTTTCCCT
CCTCACACCACCACCCGCAGGTTGACCATCCTTCGTTTTGCGGTCAAGTA
CTCTCTCCACCCTCTCTGTGTCGAAGACGCCCTCAAGCTCGAGGACCAGC
AGCCCAAGGTGAACAAATACGGCTCCCACTACTTCATAGTCATGCCTTTC
TTCCGGTTGGCGAGGGAGAGTCGGGAGGTATATTGCGAACGGGGGGGGAG
GAAGGAAGGGAGGGAGGGAGGAAGCGAGGGAGAGAATAAGATTGCATGCA
TTCATATATATATCCCTGTTTCCTGATATTGAAGGGCCTTATTCTAAGAA
GCATGACCAGCGCGGTTGCCTCGCGGATGCCCCACCGCCAGCCAACTCCT
CCCCCTCTCCCTCCCTCCCTCTTGCCCTCCCTCCCTCCCTCCCTCTTCCA
GGCGCTTGACGCCCTGCGGCAGCAGCGACGTCGTAACACGGGGATTATCA
AAAGCACTGCTGAAGCCGCCGCGGCTTTAGCGGGGGCTCGGCGGGAGGAA
GGAAGGGAGGGAGGAAAGTGTAATCGAAAGGGGAAGAAGCCGGCGGGCAT
AGGGGAGGGATGGTCCGATTTCCACTTTAAGGTCGAATGGTCCAAGTTGT
GTATTTTCATGGCCGGTCGTCCCAGCTACGACACCATTATCTCCCTGCAC
AGCAAGTGGGAGACGTTCAACAACGAGACGGACGAGATGCTCTGGGGGGA
GGGAGGGGGTGGGGAGTGGGAGGGAGGAAGGGACGGAGAGGTTGGTAGAG
GAAGGGGAAGGAGGGGGGGATGGGGAGTCGGTCGGCAAGCACGGCATCCT
TGTCGGCGGCAGCGGCCAGGGCGCCAGTGGGGAGAGGGAGGGGAGAAGCG
GAGGGATTGCGTTCGAGAAGGGGAGGAGGAAGGGAGGGAGGGAGGGATGT
GTCAAGTAGTAGCACGAACAGCAGCAGTGGGGAGGAAGGGCTGATTGCAA
GAGATTTTGTGGCAGCTTCGCATTACCACCATCATCATAACAATCATTAC
TTTCACCCTTACGGTGGGTGTACGGCCATTCCCCCCTCCAACGGTTGCGG
AGGCTGTCCGTCCTCCTCCTCCTCTTCCTCCTCCCCCCGAGGACATATCT
TTGAGAATCTGGTTGCGGCTCTCAAGGTTGACTACTCGGTCTTGCGACAA
GGGAACAGCAAGCACCTGCTCTATCGCATCTTGGATGAGGCAGTGGACTA
TTTATTGCCCATTGCCCGCGCGTACCGAACGAGGGTCCGATTATTTCAGG
CTCACTTGCATCGGAACGAGAGCAAGTTCACCAAGGTGAGCCCATGCAAG
ACATTCCCTCCTTCGTTCCCTCCCTCCGCCTCTTCCTTCACAAGAACACT
CCTCATGATAGTCTGGATTCAACATCTTGTCAAAGCGCTGTCCGACTGCT
TTCTCTCAACCCTCCCTCCCTCTCTCCCTCCCCTCGTAGGAACAAATGCG
CTTGGTCCTGGGCATGAAGAGCGAGCTACAGCGGCTGCAGCGACGCATCC
GACCCATGAAAGCGGTGGTGCGGCACCTGATGGATGATGAACAGATAGGG
CACGACATGAAAGTGTACTTGGAAGACGTGCTGGACCACGTGGTGAGGGG
GCTGGAGGAGATCGGTGGGTGCATCGAAATGTGCGACTCGACAAAGGAGG
AGTTCAAGAGCTTGCGGGTAAGGACGGATGGGAGGAGGGGAGGAGGGTGG
AGGATGTATGTGCGTGTGCATCAGTGGTTGGGCAATTTTCCAGATAATGT
CGTGCGGGGCTTGGTGGGGGGAGGGTATACTGAGAGAGATGTGGCTCGAG
GAAGAGTTTTCGGCTACGGTTACGTCCTTCATACTTTCCTTCCTCCTACG
CTCCTTTCCTCCCTCAATGAATTGAATGTTTTCGCTTTCATCATCCCTCC
CTCCTGACACCATCTCCTTTCCTCCCTTTATACTGACTGCTCACGCCATG
GCTAGGACCAACGGACAAACGAGGTGCTCTACACGCTGACGGTGGTGACG
ACCATGTTTGTGCCCCTCCAGTTTCTAACTGGAGTGTATGGGGTACGTGC
CTGAAGGAATGATGGAGGACGGGAGGGCTAGAAAGAGAGACTTTTCCTTC
CCTTCCCATGGCCAACCCACACGCTTACCACGTCCCTCCCTCCCTGTCTC
TTCCACGCTCGCTTCGTATTGAACCAAATAGATGAATTTCGTCAATGCTG
AAGGGCATCCGACCATGCCGGAGCTGCTATGGCCCCGGGGCTATCTGTTC
TTTTGGTGCATGGCCGCGACTCTTTTTTCCGTCTCCTTGTACTTTTTCAG
GACGCACCTGTCTTACTCTTGA back to topCoding sequence (CDS) from alignment at chr8:340050..343021+ >NO08G01080.1 ID=NO08G01080.1|Name=NO08G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at chr8:340050..343021+ (Nannochloropsis oceanica)
ATGCATTCATATATATATCCCTGTTTCCTGATATTGAAGGGCCTTATTCT
AAGAAGCATGACCAGCGCGGTTGCCTCGCGGATGCCCCACCGCCAGCCAA
CTCCTCCCCCTCTCCCTCCCTCCCTCTTGCCCTCCCTCCCTCCCTCCCTC
TTCCAGGCGCTTGACGCCCTGCGGCAGCAGCGACGTCGTAACACGGGGAT
TATCAAAAGCACTGCTGAAGCCGCCGCGGCTTTAGCGGGGGCTCGGCGGG
AGGAAGGAAGGGAGGGAGGAAAGTGTAATCGAAAGGGGAAGAAGCCGGCG
GGCATAGGGGAGGGATGGTCCGATTTCCACTTTAAGGTCGAATGGTCCAA
GTTGTGTATTTTCATGGCCGGTCGTCCCAGCTACGACACCATTATCTCCC
TGCACAGCAAGTGGGAGACGTTCAACAACGAGACGGACGAGATGCTCTGG
GGGGAGGGAGGGGCGGCCAGGGCGCCAGTGGGGAGAGGGAGGGGAGAAGC
GGAGGGATTGCGTTCGAGAAGGGGAGGAGGAAGGGAGGGAGGGAGGGATG
TGTCAAGTAGTAGCACGAACAGCAGCAGTGGGGAGGAAGGGCTGATTGCA
AGAGATTTTGTGGCAGCTTCGCATTACCACCATCATCATAACAATCATTA
CTTTCACCCTTACGGTGGGTGTACGGCCATTCCCCCCTCCAACGGTTGCG
GAGGCTGTCCGTCCTCCTCCTCCTCTTCCTCCTCCCCCCGAGGACATATC
TTTGAGAATCTGGTTGCGGCTCTCAAGGTTGACTACTCGGTCTTGCGACA
AGGGAACAGCAAGCACCTGCTCTATCGCATCTTGGATGAGGCAGTGGACT
ATTTATTGCCCATTGCCCGCGCGTACCGAACGAGGGTCCGATTATTTCAG
GCTCACTTGCATCGGAACGAGAGCAAGTTCACCAAGGAACAAATGCGCTT
GGTCCTGGGCATGAAGAGCGAGCTACAGCGGCTGCAGCGACGCATCCGAC
CCATGAAAGCGGTGGTGCGGCACCTGATGGATGATGAACAGATAGGGCAC
GACATGAAAGTGTACTTGGAAGACGTGCTGGACCACGTGGTGAGGGGGCT
GGAGGAGATCGGTGGGTGCATCGAAATGTGCGACTCGACAAAGGAGGAGT
TCAAGAGCTTGCGGGACCAACGGACAAACGAGGTGCTCTACACGCTGACG
GTGGTGACGACCATGTTTGTGCCCCTCCAGTTTCTAACTGGAGTGTATGG
GATGAATTTCGTCAATGCTGAAGGGCATCCGACCATGCCGGAGCTGCTAT
GGCCCCGGGGCTATCTGTTCTTTTGGTGCATGGCCGCGACTCTTTTTTCC
GTCTCCTTGTACTTTTTCAGGACGCACCTGTCTTACTCTTGA back to top
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