NO07G04550.1, NO07G04550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04550.1
Unique NameNO07G04550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length894
Alignment locationchr7:1279967..1282051 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1279967..1282051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04550.1 vs.
Match: XP_005855429.1 (histone acetyltransferase complex component, partial [Nannochloropsis gaditana CCMP526]; EKU20936.1 histone acetyltransferase complex component, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 330.9 bits (847), Expect = 4.200e-87
Identity = 175/268 (65.30%), Postives = 193/268 (72.01%), Query Frame = 0 
Query:    1 MSSPATSNAAVKDNHPAMVKQAADATAAAKEKEDSGARAAAREAAADAAAAAATAPPSAPAPVPGGSLQFRSDMLLVGGKPGLFHCNYCMRDISNTIRIKCAETSTCPDWDLCVDCFGAGVELGKHKNDHPYRVVDNTAYPIFAPDWTATEELLMLSALEAHGMGNWGKVAEVLNSKDKTEKACMEHYLDLYLHSYGSILPKDTVGYGKTHDLLTEEQRKEYVMGPLDMETYPEALHLKGAPPPLPTARPTHAKREGRRKGRVGGRGG 269
            M+ P T      D+        A    AA+        +  +  A  AA  AA  PP+     PGG+LQ  SDMLLVGGKPGLFHCNYCMRDISNTIRIKCAE STCPDWDLCVDCFGAGVELGKHKNDHPYRVVDNT YPIF+PDWTATEELL+LSALEAHGMGNWGKVAE+LN K+KTEKACMEHY DLYLHSYGSILPK T+G G+T  L++EE   EY M PLD+  YPEA+HL GAPPP P   P    R GR   R GG+ G
Sbjct:    1 MALPDTVATMAHDSMEVSTSVHASVQDAAENSTAVTPLSKMKGDAETAAGPAAAVPPTTSQHTPGGALQLHSDMLLVGGKPGLFHCNYCMRDISNTIRIKCAEVSTCPDWDLCVDCFGAGVELGKHKNDHPYRVVDNTHYPIFSPDWTATEELLLLSALEAHGMGNWGKVAELLNCKEKTEKACMEHYYDLYLHSYGSILPKQTLGGGETTALVSEE---EYRMRPLDLARYPEAVHLIGAPPPPPDGTPYERPRAGRE--REGGKEG 263
The following BLAST results are available for this feature:
BLAST of NO07G04550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855429.14.200e-8765.30histone acetyltransferase complex component, parti... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04550NO07G04550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04550.1NO07G04550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04550.1.cds1NO07G04550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04550.1.cds2NO07G04550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04550.1.cds3NO07G04550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04550.1.cds4NO07G04550.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04550.1.cds5NO07G04550.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04550.1.cds6NO07G04550.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04550.1.cds7NO07G04550.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04550.1 ID=NO07G04550.1|Name=NO07G04550.1|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ATGTCTTCTCCTGCCACCAGCAACGCCGCAGTTAAGGACAACCACCCTGC
AATGGTGAAGCAAGCGGCCGATGCGACTGCTGCCGCCAAGGAGAAGGAGG
ACTCTGGCGCGCGCGCCGCAGCACGGGAAGCAGCAGCCGACGCAGCCGCC
GCCGCTGCGACTGCCCCTCCTTCAGCACCAGCGCCAGTCCCAGGCGGGTC
ATTGCAGTTTCGCTCAGACATGCTGCTGGTAGGTGGGAAGCCCGGCTTGT
TCCATTGCAATTATTGCATGCGCGACATCAGCAACACCATACGCATAAAG
TGCGCCGAGACGTCCACCTGCCCCGACTGGGATCTCTGTGTGGACTGCTT
TGGTGCGGGCGTGGAGCTGGGGAAGCACAAGAATGATCATCCCTACCGCG
TCGTAGACAACACGGCCTACCCCATCTTCGCCCCCGACTGGACGGCCACG
GAGGAGCTATTGATGCTGTCGGCCCTGGAAGCCCACGGGATGGGGAATTG
GGGCAAGGTCGCCGAGGTCCTCAATTCCAAGGATAAGACGGAGAAGGCAT
GTATGGAGCACTACCTTGACCTCTATTTGCACTCGTACGGGAGCATCTTG
CCCAAAGACACAGTGGGTTACGGCAAGACCCACGACCTCCTGACCGAGGA
GCAGCGCAAGGAGTACGTGATGGGCCCCCTCGACATGGAAACGTACCCGG
AGGCCCTGCACCTGAAGGGCGCCCCCCCCCCCCTCCCCACGGCACGCCCT
ACTCACGCGAAAAGGGAGGGAAGGAGAAAAGGGAGGGTGGGAGGGAGGGG
GGGGAGGCGAGCAGCGGCAGGGGCGAGGGGAAGGAGGGTAGTCAGGCTAA
GGAGGGAGGCCCCGCGGCCAACCCCCTTCCCTCCGAGTCGGTAA
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protein sequence of NO07G04550.1

>NO07G04550.1-protein ID=NO07G04550.1-protein|Name=NO07G04550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MSSPATSNAAVKDNHPAMVKQAADATAAAKEKEDSGARAAAREAAADAAA
AAATAPPSAPAPVPGGSLQFRSDMLLVGGKPGLFHCNYCMRDISNTIRIK
CAETSTCPDWDLCVDCFGAGVELGKHKNDHPYRVVDNTAYPIFAPDWTAT
EELLMLSALEAHGMGNWGKVAEVLNSKDKTEKACMEHYLDLYLHSYGSIL
PKDTVGYGKTHDLLTEEQRKEYVMGPLDMETYPEALHLKGAPPPLPTARP
THAKREGRRKGRVGGRGGRRAAAGARGRRVVRLRREAPRPTPFPPSR*
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mRNA from alignment at chr7:1279967..1282051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04550.1 ID=NO07G04550.1|Name=NO07G04550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp|location=Sequence derived from alignment at chr7:1279967..1282051- (Nannochloropsis oceanica)
ATGTCTTCTCCTGCCACCAGCAACGCCGCAGTTAAGGACAACCACCCTGC
AATGGTGAAGCAAGCGGCCGATGCGACTGCTGCCGCCAAGGAGAAGGAGG
ACTCTGGCGCGCGCGCCGCAGCACGGGAAGCAGCAGCCGACGCAGCCGCC
GCCGCTGCGACTGCCCCTCCTTCAGCACCAGCGCCAGTCCCAGGCGGGTC
ATTGCAGTTTCGCTCAGACATGCTGCTGGTAGGTGGGAAGCCCGGCTTGT
TCCATTGCAATTATTGCATGCGCGACATCAGCAACACCATACGCATAAAG
TGTACGTGTAGAGGGAGGGAGGGTGCAAGGGGGGAATAGACTTGAGGCCG
TGATGGGTTTGGCAGCACTGCGACGGGCAAGTGGTTTTCATTAATTTAAG
TTAAGGGACGTTGAATTTTGTATGTGTTATACATCCTTACATTTTCTGGT
CACTGAAATCAGTTTTATCTCATTTCCTCCCTCCCTCCCTCCCTCCCTCT
CCCGTTCCCTACCTCCTTACCGCCCTCCCTCTCTCCTCCCACCCTCAGGC
GCCGAGACGTCCACCTGCCCCGACTGGGATCTCTGTGTGGACTGCTTTGG
TGCGGGCGTGGAGCTGGGGAAGCACAAGAATGATCATGTACGTTAATTTT
GGATTGAGAGAAGGAGATGTAACCCTAAATAAGCGGAGGGAAGGAGGGAG
CGAGGGAAGGAAGGAAATGAAAGAGGAGCTACGTGCATTGGGAGAGGCAC
ACGATAAAATAATGGAGGAAGCAGCAATGCCTCGTCTCTGTCTTGTTTCT
CTTAGTGTAGCTGAAGTGACCGACTCATATCTCTATGCGTTGCCCTGTCG
TCTTGTTGGAGCTGACCCTCTTCCCCTCCTCCCTCCCTCCTATTAGCCCT
ACCGCGTCGTAGACAACACGGCCTACCCCATCTTCGCCCCCGACTGGACG
GCCACGGAGGAGCTATTGATGCTGTCGGGTAGGCCGAGAAAGGGAGGGAG
GGAGGAAGGGACGGAGGGAGGGCGGGCGGATTGAGGGCTTGCGGACAACC
CACACGTTGTACGATTATTCTGCAAAAATGGCCTGAACGACTGACTATTA
CGATAGTCGTCAATAGTCGTCGATAGACGTGTGATTAATCGTACTCGTGC
ATGATTTCCACCGAGGACGACTGGTAGTCGTCGTAGTCGTGGGACAACCA
CTCACTCCTTCTTCGCCTTCCACTCACTCCTTCTTCGCCTTCTCCGTTTC
CTACCCCTCACTCTACTCCCCCTCTTGACTCGCTTTCCTGGATCAGCCCT
GGAAGCCCACGGGATGGGGAATTGGGGCAAGGTCGCCGAGGTCCTCAATT
CCAAGGCACGTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCGTCCT
TCTTTCCTCACCGACCTCTCCTTCCCTCCCTTCCTCCCAGGATAAGACGG
AGAAGGCATGTATGGAGCACTACCTTGACCTCTATTTGCACTCGTACGGG
AGCATCTTGCCCAAAGACACAGTGGGTTACGGCAAGACCCACGACCTCCT
GACCGAGGAGCAGCGCAAGGTGAGAAAGGAGGGAGGGAGGGAGGGAGGGA
GGGAAGGAGGGAGAAAAAGGATCGAGAAGCTCGATTTGGATATCACGCCT
CTTCCTTTTGCACAGTGACTCTCCCTCCCTCCCTCCCTCCCCCGTAGGAG
TACGTGATGGGCCCCCTCGACATGGAAACGTACCCGGAGGCCCTGCACCT
GAAGGGCGCCCCCCCCCCCCTCCCCACGGCACGCCCTACTCACGCGAAAA
GGGAGGGAAGGAGAAAAGGGAGGGTGGGAGGGAGGGGGGGGAGGCGAGCA
GCGGCAGGGGCGAGGGGAAGGAGGGTAGTCAGGCTAAGGAGGGAGGTGAG
AAGGGGATTATGGAGGGAAAGAGGGCGGGGAAGCGAAATGAGTGGTGTGG
TGTTTCTCGGCCCGTCTTGAGCTTTCTCCCTCTCCTGTGGTGTCCTCGTC
GTCGTTGCGCTCCCCCTCTCTGACCCTCCCTCCCTCCCTCCCTCCTCAGG
CCCCGCGGCCAACCCCCTTCCCTCCGAGTCGGTAA
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Coding sequence (CDS) from alignment at chr7:1279967..1282051-

>NO07G04550.1 ID=NO07G04550.1|Name=NO07G04550.1|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at chr7:1279967..1282051- (Nannochloropsis oceanica)
ATGTCTTCTCCTGCCACCAGCAACGCCGCAGTTAAGGACAACCACCCTGC
AATGGTGAAGCAAGCGGCCGATGCGACTGCTGCCGCCAAGGAGAAGGAGG
ACTCTGGCGCGCGCGCCGCAGCACGGGAAGCAGCAGCCGACGCAGCCGCC
GCCGCTGCGACTGCCCCTCCTTCAGCACCAGCGCCAGTCCCAGGCGGGTC
ATTGCAGTTTCGCTCAGACATGCTGCTGGTAGGTGGGAAGCCCGGCTTGT
TCCATTGCAATTATTGCATGCGCGACATCAGCAACACCATACGCATAAAG
TGCGCCGAGACGTCCACCTGCCCCGACTGGGATCTCTGTGTGGACTGCTT
TGGTGCGGGCGTGGAGCTGGGGAAGCACAAGAATGATCATCCCTACCGCG
TCGTAGACAACACGGCCTACCCCATCTTCGCCCCCGACTGGACGGCCACG
GAGGAGCTATTGATGCTGTCGGCCCTGGAAGCCCACGGGATGGGGAATTG
GGGCAAGGTCGCCGAGGTCCTCAATTCCAAGGATAAGACGGAGAAGGCAT
GTATGGAGCACTACCTTGACCTCTATTTGCACTCGTACGGGAGCATCTTG
CCCAAAGACACAGTGGGTTACGGCAAGACCCACGACCTCCTGACCGAGGA
GCAGCGCAAGGAGTACGTGATGGGCCCCCTCGACATGGAAACGTACCCGG
AGGCCCTGCACCTGAAGGGCGCCCCCCCCCCCCTCCCCACGGCACGCCCT
ACTCACGCGAAAAGGGAGGGAAGGAGAAAAGGGAGGGTGGGAGGGAGGGG
GGGGAGGCGAGCAGCGGCAGGGGCGAGGGGAAGGAGGGTAGTCAGGCTAA
GGAGGGAGGCCCCGCGGCCAACCCCCTTCCCTCCGAGTCGGTAA
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Synonyms
Publications