NO07G04380.1, NO07G04380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04380.1
Unique NameNO07G04380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length546
Alignment locationchr7:1220001..1220758 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1220001..1220758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04380.1 vs.
Match: EWM20066.1 (hypothetical protein Naga_101980g1 [Nannochloropsis gaditana])

HSP 1 Score: 322.0 bits (824), Expect = 1.200e-84
Identity = 170/188 (90.43%), Postives = 177/188 (94.15%), Query Frame = 0 
Query:    1 MLASLLAAIINHDHQGDNMLRRFTAKAGAMVRRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIRHIESKAAAEIARVEDKAAAE-------IVRVEDKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 182
            +LA LLAAIINHDHQGD MLRRFTAKAGAM RRGSTLPGPGKGRVLRGGFSSTAHTGPGTS+GEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEI++++SKAAAEIARVEDKAAAE       I RVEDKRTMSE+FWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN
Sbjct:   82 LLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSNGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKAAAEIARVEDKAAAEIAQAKADIARVEDKRTMSEMFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 269
The following BLAST results are available for this feature:
BLAST of NO07G04380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20066.11.200e-8490.43hypothetical protein Naga_101980g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04380NO07G04380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04380.1NO07G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04380.1.cds1NO07G04380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04380.1.cds2NO07G04380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04380.1 ID=NO07G04380.1|Name=NO07G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=546bp
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGTACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGCCCACACGGGGCCGGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATCAGG
CACATCGAGAGCAAGGCGGCGGCGGAGATCGCGCGTGTGGAGGACAAGGC
GGCGGCGGAGATCGTGCGTGTGGAGGACAAGCGGACAATGTCGGAAGTGT
TTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTAGCTTAC
ACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGTAAAAA
GAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAG
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protein sequence of NO07G04380.1

>NO07G04380.1-protein ID=NO07G04380.1-protein|Name=NO07G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MLASLLAAIINHDHQGDNMLRRFTAKAGAMVRRGSTLPGPGKGRVLRGGF
SSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIR
HIESKAAAEIARVEDKAAAEIVRVEDKRTMSEVFWKAEVERFKREVQLAY
TQDYEPYQAALVDKRKKRGGTGGLEEKEEEN*
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mRNA from alignment at chr7:1220001..1220758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04380.1 ID=NO07G04380.1|Name=NO07G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=758bp|location=Sequence derived from alignment at chr7:1220001..1220758- (Nannochloropsis oceanica)
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGTACGGAGAG
GGAGCACGCTTCCCGGGCCAGGTGAGGTGGCGTGTGTGATGCATTTAGGA
AGAACTCGGGCTTGTTGATGGGGTGGGAATGCGCGTTCAGTGCACGCGAC
CGCAGTCTGGCCGAGGCATGTTGATCCCCCCTTTGTCTGCGTGTCTGTGT
CGTTTGCGTTGCAATCTTTGTTATGCGGACAAGGGCCCGCGTCAAGGTGT
TCACGCACACGCACATCCATACACACCCAACAGGAAAGGGACGCGTGCTG
CGGGGGGGCTTCTCCTCGACAGCCCACACGGGGCCGGGCACGAGCAGTGG
AGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGG
TGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAG
ACTGAGATCAGGCACATCGAGAGCAAGGCGGCGGCGGAGATCGCGCGTGT
GGAGGACAAGGCGGCGGCGGAGATCGTGCGTGTGGAGGACAAGCGGACAA
TGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTC
CAACTAGCTTACACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGA
CAAACGTAAAAAGAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGG
AGAATTAG
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Coding sequence (CDS) from alignment at chr7:1220001..1220758-

>NO07G04380.1 ID=NO07G04380.1|Name=NO07G04380.1|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at chr7:1220001..1220758- (Nannochloropsis oceanica)
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGTACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGCCCACACGGGGCCGGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATCAGG
CACATCGAGAGCAAGGCGGCGGCGGAGATCGCGCGTGTGGAGGACAAGGC
GGCGGCGGAGATCGTGCGTGTGGAGGACAAGCGGACAATGTCGGAAGTGT
TTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTAGCTTAC
ACTCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGTAAAAA
GAGGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAG
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Synonyms
Publications