NO07G04340.1, NO07G04340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04340.1
Unique NameNO07G04340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length633
Alignment locationchr7:1212956..1213799 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1212956..1213799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04340.1 vs.
Match: EWM20054.1 (hypothetical protein Naga_102018g1 [Nannochloropsis gaditana])

HSP 1 Score: 354.4 bits (908), Expect = 2.500e-94
Identity = 195/210 (92.86%), Postives = 198/210 (94.29%), Query Frame = 0 
Query:    1 MLALLLAAIINHDHQGDNMLRRFTAKAGAMARSGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAELRHIESKAAAEIAQAKAEIARVEDKAAAEIAQAKADVARVEDKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 211
            MLALLLAAIINHDHQGD MLRRFTAKAGAMAR GSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTE    IKYVQSKAAAE+  +E KAAAEIAQAKAEIARVEDKAAAEIAQAKADVARVEDKRTMSEVFWKAEVERFKREVQLA+TQDYEPYQAALVDKRKKRGGT G EEKEEEN
Sbjct:   62 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTE----IKYVQSKAAAEIARVEDKAAAEIAQAKAEIARVEDKAAAEIAQAKADVARVEDKRTMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 267
The following BLAST results are available for this feature:
BLAST of NO07G04340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20054.12.500e-9492.86hypothetical protein Naga_102018g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04340NO07G04340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04340.1NO07G04340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04340.1.cds1NO07G04340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04340.1.cds2NO07G04340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04340.1 ID=NO07G04340.1|Name=NO07G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
ATGCTTGCCTTGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGTG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCG
ACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGTTGAGGCACAT
CGAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGATCGCGC
GTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGACGTC
GCGCGTGTGGAGGACAAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGA
GGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGCTTACACTCAAGACTATG
AGCCTTATCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACC
GGCGGATTGGAGGAGAAGGAAGAGGAGAATTAG
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protein sequence of NO07G04340.1

>NO07G04340.1-protein ID=NO07G04340.1-protein|Name=NO07G04340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MLALLLAAIINHDHQGDNMLRRFTAKAGAMARSGSTLPGPGKGRVLRGGF
SSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMA
TEIKYVQSKAAAELRHIESKAAAEIAQAKAEIARVEDKAAAEIAQAKADV
ARVEDKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGT
GGLEEKEEEN*
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mRNA from alignment at chr7:1212956..1213799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04340.1 ID=NO07G04340.1|Name=NO07G04340.1|organism=Nannochloropsis oceanica|type=mRNA|length=844bp|location=Sequence derived from alignment at chr7:1212956..1213799- (Nannochloropsis oceanica)
ATGCTTGCCTTGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGTG
GGAGCACGCTTCCCGGGCCAGGTGAGGTGGCGTGTGTGATGCATTTTGGA
AGAACTCGGGCTTGTTGATGGGGTGGGAGTGCGCGTTCAGTGCACGCGAC
CGCAGTCTGGCCGAGGCATGTTGATCCCCCCTTTGTCTGCGTGTCTGTGT
CGTTTGCGTTGCAATCTTTGTTATGCGGACAAGGCCCGCATCAAGGTGTT
CACGCACACGCACATCCATACACACCCAACAGGAAAGGGACGCGTGCTGC
GGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGA
GAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGGT
GCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGA
CTGAGATGGCGACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAG
TTGAGGCACATCGAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGC
GGAGATCGCGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCAGGCGA
AAGCGGACGTCGCGCGTGTGGAGGACAAGCGGACAATGTCGGAAGTGTTT
TGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGCTTACAC
TCAAGACTATGAGCCTTATCAGGCCGCGCTTGTGGACAAACGTAAAAAGA
GGGGAGGAACCGGCGGATTGGAGGAGAAGGAAGAGGAGAATTAG
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Coding sequence (CDS) from alignment at chr7:1212956..1213799-

>NO07G04340.1 ID=NO07G04340.1|Name=NO07G04340.1|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at chr7:1212956..1213799- (Nannochloropsis oceanica)
ATGCTTGCCTTGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGTG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCG
ACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGTTGAGGCACAT
CGAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGATCGCGC
GTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGACGTC
GCGCGTGTGGAGGACAAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGA
GGTGGAGCGGTTCAAGCGCGAGGTCCAACTGGCTTACACTCAAGACTATG
AGCCTTATCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACC
GGCGGATTGGAGGAGAAGGAAGAGGAGAATTAG
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Synonyms
Publications