NO07G04290.1, NO07G04290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04290.1
Unique NameNO07G04290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length567
Alignment locationchr7:1204136..1204914 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1204136..1204914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04290.1 vs.
Match: EWM20054.1 (hypothetical protein Naga_102018g1 [Nannochloropsis gaditana])

HSP 1 Score: 327.4 bits (838), Expect = 2.900e-86
Identity = 182/206 (88.35%), Postives = 185/206 (89.81%), Query Frame = 0 
Query:    1 MLALLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIKYVQS-----------KAAAEIAQAKAEIVRVEDKAAAEI-------ARLEDKRTMSEVFWKAEVERFKREIQLAYTQDYEPYQAALVDKRKKRGGTGGSEEKEEEN 189
            MLALLLAAIINHDHQGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIKYVQS           KAAAEIAQAKAEI RVEDKAAAEI       AR+EDKRTMSEVFWKAEVERFKRE+QLA+TQDYEPYQAALVDKRKKRGGT GSEEKEEEN
Sbjct:   62 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIKYVQSKAAAEIARVEDKAAAEIAQAKAEIARVEDKAAAEIAQAKADVARVEDKRTMSEVFWKAEVERFKREVQLAFTQDYEPYQAALVDKRKKRGGTSGSEEKEEEN 267
The following BLAST results are available for this feature:
BLAST of NO07G04290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20054.12.900e-8688.35hypothetical protein Naga_102018g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04290NO07G04290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04290.1NO07G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04290.1.cds1NO07G04290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04290.1.cds2NO07G04290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04290.1 ID=NO07G04290.1|Name=NO07G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=567bp
ATGCTTGCCTTGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGCCCACACGGGGCCGGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACGGAGATAAAG
TATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGAT
CGTGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTTTGGAAGACA
AGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAG
CGCGAGATCCAACTGGCTTACACTCAAGACTATGAGCCTTACCAGGCCGC
GCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATCGGAGGAGA
AGGAAGAGGAGAATTAG
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protein sequence of NO07G04290.1

>NO07G04290.1-protein ID=NO07G04290.1-protein|Name=NO07G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MLALLLAAIINHDHQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTAHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEIK
YVQSKAAAEIAQAKAEIVRVEDKAAAEIARLEDKRTMSEVFWKAEVERFK
REIQLAYTQDYEPYQAALVDKRKKRGGTGGSEEKEEEN*
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mRNA from alignment at chr7:1204136..1204914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04290.1 ID=NO07G04290.1|Name=NO07G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=779bp|location=Sequence derived from alignment at chr7:1204136..1204914- (Nannochloropsis oceanica)
ATGCTTGCCTTGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGTGAGGTGGCGTGTGTGATGCATTTAGGA
AGAACTCGGGCTTGTTGATGGGGTGGGAGTGCGCGTTCAGTGCACGCGAC
CGCAGTCTGGCCGAGGCATGTTGATTCCCCCTTTGTCTGCGTGTCTGTGT
CGTTTGCGTTGCAATCTTTGTTATGCGGACAAGGGCCCGCGTCAAGGTGT
TCACGCACACGCACATCTATACACACCCAACAGGAAAGGGACGCGTGCTG
CGGGGGGGCTTCTCCTCGACAGCCCACACGGGGCCGGGCACGAGCAGTGG
AGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGG
TGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAG
ACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGC
GAAAGCGGAGATCGTGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGC
GTTTGGAAGACAAGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTG
GAGCGGTTCAAGCGCGAGATCCAACTGGCTTACACTCAAGACTATGAGCC
TTACCAGGCCGCGCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCG
GATCGGAGGAGAAGGAAGAGGAGAATTAG
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Coding sequence (CDS) from alignment at chr7:1204136..1204914-

>NO07G04290.1 ID=NO07G04290.1|Name=NO07G04290.1|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at chr7:1204136..1204914- (Nannochloropsis oceanica)
ATGCTTGCCTTGCTGCTTGCTGCCATCATCAACCACGACCACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGCCCACACGGGGCCGGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAGGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACGGAGATAAAG
TATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGCGAAAGCGGAGAT
CGTGCGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTTTGGAAGACA
AGCGGACAATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAG
CGCGAGATCCAACTGGCTTACACTCAAGACTATGAGCCTTACCAGGCCGC
GCTTGTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATCGGAGGAGA
AGGAAGAGGAGAATTAG
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Synonyms
Publications