NO07G04280.1, NO07G04280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04280.1
Unique NameNO07G04280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length723
Alignment locationchr7:1202238..1203173 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1202238..1203173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04280.1 vs.
Match: EWM20009.1 (hypothetical protein Naga_102330g1 [Nannochloropsis gaditana])

HSP 1 Score: 349.4 bits (895), Expect = 7.600e-93
Identity = 188/199 (94.47%), Postives = 192/199 (96.48%), Query Frame = 0 
Query:    1 MLASLLAAIINHDYQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSKAAAEIAQAKAEIAQAKAEIARVEDKAAAEIARVEDKRTMSEVFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGSEEKEEEN 200
            MLA LLAAIINHD+QGD MLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSST HTGPGTSSGEELGKKWAT FQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQS+AAAEIAQAKAEIAQAKA++ARVEDKAAAEIARVEDKR MSEVFWKAEVER KREVQLAYTQDYEPYQAALVDKRKKRGGTGG EEKEEEN
Sbjct:    1 MLALLLAAIINHDHQGDKMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYVQSRAAAEIAQAKAEIAQAKADVARVEDKAAAEIARVEDKRAMSEVFWKAEVERIKREVQLAYTQDYEPYQAALVDKRKKRGGTGGLEEKEEEN 199
The following BLAST results are available for this feature:
BLAST of NO07G04280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20009.17.600e-9394.47hypothetical protein Naga_102330g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04280NO07G04280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04280.1NO07G04280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04280.1.cds1NO07G04280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04280.1.cds2NO07G04280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04280.1 ID=NO07G04280.1|Name=NO07G04280.1|organism=Nannochloropsis oceanica|type=mRNA|length=723bp
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACTACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCG
ACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGC
GAAAGCGGAGATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAGGACA
AGGCGGCGGCGGAGATCGCGCGTGTGGAAGACAAGCGGACTATGTCGGAA
GTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTAGC
TTACACTCAAGACTATGAGCCTTACCAGGCCGCGCTTGTGGACAAACGTA
AAAAGAGGGGAGGAACCGGCGGATCGGAGGAGAAGGAAGAGGAGAATTAG
GATTCGGGGCCCTACCTTAATATAAATAGAAATCATGTAGAAAGACACAT
TCAAAGACATGTACAGTGGACGGGGTTGTGCAGTAGAGAGATGGGCAGGA
GGGGGATAGGACTCATACACGAG
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protein sequence of NO07G04280.1

>NO07G04280.1-protein ID=NO07G04280.1-protein|Name=NO07G04280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MLASLLAAIINHDYQGDNMLRRFTAKAGAMARRGSTLPGPGKGRVLRGGF
SSTVHTGPGTSSGEELGKKWATIFQGIGAVLGVAGATAVVVRTFDQTEMA
TEIKYVQSKAAAEIAQAKAEIAQAKAEIARVEDKAAAEIARVEDKRTMSE
VFWKAEVERFKREVQLAYTQDYEPYQAALVDKRKKRGGTGGSEEKEEEN*
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mRNA from alignment at chr7:1202238..1203173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04280.1 ID=NO07G04280.1|Name=NO07G04280.1|organism=Nannochloropsis oceanica|type=mRNA|length=936bp|location=Sequence derived from alignment at chr7:1202238..1203173- (Nannochloropsis oceanica)
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACTACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGTGAGGTGGCGTGTGTGATGCATTTAGGA
AGAACTCGGGCTTGTTGATGGGGTGGGAATGCGCGTTCAGTGCACGCGAC
CGCAGTCTGGCCGAGGCATGTTGATTCCCCCCTTTGTCTGCGTGTCTGTG
TCGTTTGCGTTGCAATCTTTGTTATGCGGACAAGGGCCCGCGTCAAGGTG
TTCACGCACACGCACATCCATACACACCCAACAGGAAAGGGACGCGTGCT
GCGGGGGGGCTTCTCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTG
GAGAGGAGCTCGGTAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCG
GTGCTAGGGGTTGCTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCA
GACTGAGATGGCGACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGG
AGATCGCGCAGGCGAAAGCGGAGATCGCGCAGGCGAAAGCGGAGATCGCG
CGTGTGGAGGACAAGGCGGCGGCGGAGATCGCGCGTGTGGAAGACAAGCG
GACTATGTCGGAAGTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCG
AGGTCCAACTAGCTTACACTCAAGACTATGAGCCTTACCAGGCCGCGCTT
GTGGACAAACGTAAAAAGAGGGGAGGAACCGGCGGATCGGAGGAGAAGGA
AGAGGAGAATTAGGATTCGGGGCCCTACCTTAATATAAATAGAAATCATG
TAGAAAGACACATTCAAAGACATGTACAGTGGACGGGGTTGTGCAGTAGA
GAGATGGGCAGGAGGGGGATAGGACTCATACACGAG
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Coding sequence (CDS) from alignment at chr7:1202238..1203173-

>NO07G04280.1 ID=NO07G04280.1|Name=NO07G04280.1|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr7:1202238..1203173- (Nannochloropsis oceanica)
ATGCTTGCCTCGCTGCTTGCTGCCATCATCAACCACGACTACCAGGGGGA
CAACATGCTTCGGCGCTTCACGGCGAAGGCTGGGGCCATGGCACGGAGAG
GGAGCACGCTTCCCGGGCCAGGAAAGGGACGCGTGCTGCGGGGGGGCTTC
TCCTCGACAGTCCACACGGGGCCAGGCACGAGCAGTGGAGAGGAGCTCGG
TAAGAAGTGGGCGACAATCTTCCAAGGCATTGGCGCGGTGCTAGGGGTTG
CTGGTGCTACCGCTGTGGTCGTGCGTACTTTCGACCAGACTGAGATGGCG
ACGGAGATAAAGTATGTCCAGAGCAAGGCGGCGGCGGAGATCGCGCAGGC
GAAAGCGGAGATCGCGCAGGCGAAAGCGGAGATCGCGCGTGTGGAGGACA
AGGCGGCGGCGGAGATCGCGCGTGTGGAAGACAAGCGGACTATGTCGGAA
GTGTTTTGGAAGGCGGAGGTGGAGCGGTTCAAGCGCGAGGTCCAACTAGC
TTACACTCAAGACTATGAGCCTTACCAGGCCGCGCTTGTGGACAAACGTA
AAAAGAGGGGAGGAACCGGCGGATCGGAGGAGAAGGAAGAGGAGAATTAG
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Synonyms
Publications