NO07G04180.1, NO07G04180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04180.1
Unique NameNO07G04180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1058
Alignment locationchr7:1161807..1163727 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1161807..1163727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04180.1 vs.
Match: EWM26945.1 (hypothetical protein Naga_101205g2 [Nannochloropsis gaditana])

HSP 1 Score: 198.7 bits (504), Expect = 2.700e-47
Identity = 105/207 (50.72%), Postives = 143/207 (69.08%), Query Frame = 0 
Query:   19 PAPTRLVSISLSSGIGDGGDKTEETWVEQTKYEGGKSVGDISALQIEE---PDAAAAAARTPRPRWLSLLLLGLGIIILLSVVGALIASFHNEILDAIYWCQRKRPWSALIYGLIVIVATLLGIPTMPFEIAAGFIFGLGVSFLILTVAKPIGVVGCLLLGRYFLHSYASKLTAESEEFRGLLVALEWRPWRLLLLLRMALMPGVVK 223
            P P RLVSISLSSG+ D  +KTE+   E+ K EGGKS G    LQI+E   P  ++ A   PRP WLS+L + L  I++ SV+ A+I  +H  IL A  WCQ ++PWS ++ G I++ A +LG PTMP E+ AG +FG GVS L+LTV+KP+G V C +L R+ LHS A++L + +++F  L VA + RPWRL+LLLR+A MPGV+K
Sbjct:   58 PTPIRLVSISLSSGM-DMKEKTEDAQDEEPKQEGGKSHGGAIPLQIDEAAAPSPSSKARAQPRPWWLSILFVTLSFIVIASVLVAIIMRYHEGILTAARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIK 263
The following BLAST results are available for this feature:
BLAST of NO07G04180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26945.12.700e-4750.72hypothetical protein Naga_101205g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04180NO07G04180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04180.1NO07G04180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04180.1.cds1NO07G04180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04180.1.cds2NO07G04180.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04180.1.cds3NO07G04180.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04180.1.cds4NO07G04180.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04180.1.cds5NO07G04180.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04180.1.cds6NO07G04180.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04180.1 ID=NO07G04180.1|Name=NO07G04180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp
ACAGGCATCTCTTGGGTTCGTCTCGTCACGCTTGCTGACCCTCCCCACCT
GTGCCGACTCCCACCTCGACAAAATGATGCCGACACAAACACCCATGCAG
TCATCACAATCGCATCGTACCGCGCCGCCTGCGCCCACCCGCCTCGTCTC
CATCTCCCTATCATCCGGCATCGGAGATGGCGGGGACAAGACAGAAGAGA
CCTGGGTAGAGCAAACGAAGTACGAAGGGGGCAAGTCAGTAGGAGACATC
TCCGCTCTCCAGATAGAGGAACCCGACGCTGCTGCGGCTGCGGCTAGGAC
ACCCCGTCCGCGGTGGCTTTCCCTTTTGTTGTTAGGTTTGGGTATCATCA
TCCTCCTCTCGGTGGTGGGCGCATTAATAGCGAGCTTCCACAATGAAATC
CTGGACGCCATATACTGGTGTCAACGGAAGCGGCCTTGGTCGGCTCTTAT
ATATGGGCTCATTGTCATTGTTGCCACGCTGCTCGGCATTCCCACCATGC
CCTTTGAGATTGCGGCCGGATTTATCTTCGGCCTGGGGGTCTCTTTCCTC
ATACTGACGGTGGCCAAGCCTATAGGAGTAGTTGGATGCCTGCTGCTCGG
AAGATATTTCCTTCATTCCTACGCCTCGAAACTCACTGCCGAAAGCGAAG
AATTTCGGGGTTTGTTGGTCGCGCTGGAGTGGCGCCCGTGGCGGCTGCTG
TTGCTGTTACGCATGGCCCTGATGCCGGGGGTGGTCAAGAACTACGGAGT
CGCCCTGCTTCCCTCCCTCCCCATCCTTACCGTCTTCCTTTGTGCCTTCC
TCGGTGATATGCCGTACTCCTTGCTCTGGTCGTTCGTGGGCAGTCGGGGA
GCAAGCCTCGTGGGAATGCTGGAGGGGGAAATGGCGCGAACGCCGGTAGA
GACTGCCTTGTCGTTGCTAGGAATCATTTTCCTGGTCCTGCTGGTGGCAG
GGGTCCGGCACACAGTCCAGGGGGCAGTGGAGGCGTCAAAGCGAGAGGCC
GAGGAGAGCAAGGACGAGTTCCAGTACGACGAACGAGTGTAGATACAATA
CATAGGCG
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protein sequence of NO07G04180.1

>NO07G04180.1-protein ID=NO07G04180.1-protein|Name=NO07G04180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MMPTQTPMQSSQSHRTAPPAPTRLVSISLSSGIGDGGDKTEETWVEQTKY
EGGKSVGDISALQIEEPDAAAAAARTPRPRWLSLLLLGLGIIILLSVVGA
LIASFHNEILDAIYWCQRKRPWSALIYGLIVIVATLLGIPTMPFEIAAGF
IFGLGVSFLILTVAKPIGVVGCLLLGRYFLHSYASKLTAESEEFRGLLVA
LEWRPWRLLLLLRMALMPGVVKNYGVALLPSLPILTVFLCAFLGDMPYSL
LWSFVGSRGASLVGMLEGEMARTPVETALSLLGIIFLVLLVAGVRHTVQG
AVEASKREAEESKDEFQYDERV*
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mRNA from alignment at chr7:1161807..1163727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04180.1 ID=NO07G04180.1|Name=NO07G04180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp|location=Sequence derived from alignment at chr7:1161807..1163727+ (Nannochloropsis oceanica)
ACAGGCATCTCTTGGGTTCGTCTCGTCACGCTTGCTGACCCTCCCCACCT
GTGCCGACTCCCACCTCGACAAAATGATGCCGACACAAACACCCATGCAG
TCATCACAATCGCATCGTACCGCGCCGCCTGCGCCCACCCGCCTCGTCTC
CATCTCCCTATCATCCGGCATCGGAGATGGCGGGGACAAGACAGAAGAGA
CCTGGGTAGAGCAAACGAAGTACGAAGGGGGCAAGTCAGTAGGAGACATC
TCCGCTCTCCAGATAGAGGAACCCGACGCTGCTGCGGCTGCGGCTAGGAC
ACCCCGTCCGCGGTGGCTTTCCCTTTTGTTGTTAGGTTTGGGTATCATCA
TCCTCCTCTCGGTGGTGGGCGCATTAATAGCGAGCTTCCACAATGAAATC
CTGGACGGTAAGCAAATAGGGGGAAAGGAAGGGGAGAGGGGGAGGAGGGG
GGGCGATGGTTCATCTTTGATTTTAGAGCTCCTGCCGTTTTGGCATGCTC
ATCCCCTCCTTTTCCTTCTTTCACGTCATTTCCTCCTTCCCCCTCTAGCC
ATATACTGGTGTCAACGGAAGCGGCCTTGGTCGGCTCTTATATATGGGCT
CATTGTCATTGTTGGTACGTGTCCTTGTCCTCGTCCTCGTATAAATCGTC
GCGGTGGTCACTTGATCGAGGCGCACAATTCTTTGTTCCTTCCCTCCTTG
CTCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCC
TTCCTTCCTTCCTCTTTCCCGTCATTGCCTCATTCGACTTCTCTGTCTAC
ATGGCCATCTCCGCCTTCCCTCCCTTCCTTCCTCCGTCCCCTCCCTCCCA
GCCACGCTGCTCGGCATTCCCACCATGCCCTTTGAGATTGCGGCCGGATT
TATCTTCGGCCTGGGGGTCTCTTTCCTCATACTGACGGTGGCCAAGCCTA
TAGGAGTAGTTGGATGCCTGCTGCTCGGAAGGTTAGGAAGGGGGGGAGGG
AGGGTAGGAGGACGGCTGGATGGGACACAGGAATGGAGTGTTGGAAAGAC
AAGCTTTACTTGACCCTACTGCCCTCTCTAACTAGCTTCCCCTCCCTCAG
CACCTTCCTCATCCCCCGTCATTTTGCATTTTTGAACATTTTTCTCTAAA
CTCATCGTCCAACCCACCCTCTCTCGCTCCCTCAGATATTTCCTTCATTC
CTACGCCTCGAAACTCACTGCCGAAAGCGAAGAATTTCGGGGTTTGTTGG
TCGCGCTGGAGTGGCGCCCGTGGCGGCTGCTGTTGCTGTTACGCATGGCC
CTGATGCCGGGGGTGGTCAAGAACTACGGTGAGGAGGGAGGGAAGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAA
GGAGGTGGTAGACGGAGGGGGCCCGAGAAGCTGACATTGCCCTCCCTCCC
TCCCTCCCTCAGGAGTCGCCCTGCTTCCCTCCCTCCCCATCCTTACCGTC
TTCCTTTGTGCCTTCCTCGGTGATATGCCGTACTCCTTGCTCTGGTCGTT
CGTGGGCAGTCGGGGAGCAAGCCTCGTGGGAATGCTGGAGGGGGAAATGG
CGCGAACGCCGGTAGAGACTGCCTTGTCGTTGCTAGGTAGGTAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATGAAAGAGGGAGGAG
GGAAGGACGGGAGACTGCGCGAGATGTAGGAAATTAATGTTATCCCCCTG
CGCCCTCCCTCCTTCCCCCCTCCCTTCTTGCAGGAATCATTTTCCTGGTC
CTGCTGGTGGCAGGGGTCCGGCACACAGTCCAGGGGGCAGTGGAGGCGTC
AAAGCGAGAGGCCGAGGAGAGCAAGGACGAGTTCCAGTACGACGAACGAG
TGTAGATACAATACATAGGCG
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Coding sequence (CDS) from alignment at chr7:1161807..1163727+

>NO07G04180.1 ID=NO07G04180.1|Name=NO07G04180.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr7:1161807..1163727+ (Nannochloropsis oceanica)
ATGATGCCGACACAAACACCCATGCAGTCATCACAATCGCATCGTACCGC
GCCGCCTGCGCCCACCCGCCTCGTCTCCATCTCCCTATCATCCGGCATCG
GAGATGGCGGGGACAAGACAGAAGAGACCTGGGTAGAGCAAACGAAGTAC
GAAGGGGGCAAGTCAGTAGGAGACATCTCCGCTCTCCAGATAGAGGAACC
CGACGCTGCTGCGGCTGCGGCTAGGACACCCCGTCCGCGGTGGCTTTCCC
TTTTGTTGTTAGGTTTGGGTATCATCATCCTCCTCTCGGTGGTGGGCGCA
TTAATAGCGAGCTTCCACAATGAAATCCTGGACGCCATATACTGGTGTCA
ACGGAAGCGGCCTTGGTCGGCTCTTATATATGGGCTCATTGTCATTGTTG
CCACGCTGCTCGGCATTCCCACCATGCCCTTTGAGATTGCGGCCGGATTT
ATCTTCGGCCTGGGGGTCTCTTTCCTCATACTGACGGTGGCCAAGCCTAT
AGGAGTAGTTGGATGCCTGCTGCTCGGAAGATATTTCCTTCATTCCTACG
CCTCGAAACTCACTGCCGAAAGCGAAGAATTTCGGGGTTTGTTGGTCGCG
CTGGAGTGGCGCCCGTGGCGGCTGCTGTTGCTGTTACGCATGGCCCTGAT
GCCGGGGGTGGTCAAGAACTACGGAGTCGCCCTGCTTCCCTCCCTCCCCA
TCCTTACCGTCTTCCTTTGTGCCTTCCTCGGTGATATGCCGTACTCCTTG
CTCTGGTCGTTCGTGGGCAGTCGGGGAGCAAGCCTCGTGGGAATGCTGGA
GGGGGAAATGGCGCGAACGCCGGTAGAGACTGCCTTGTCGTTGCTAGGAA
TCATTTTCCTGGTCCTGCTGGTGGCAGGGGTCCGGCACACAGTCCAGGGG
GCAGTGGAGGCGTCAAAGCGAGAGGCCGAGGAGAGCAAGGACGAGTTCCA
GTACGACGAACGAGTGTAG
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Synonyms
Publications