NO07G03230.1, NO07G03230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03230.1
Unique NameNO07G03230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1086
Alignment locationchr7:892994..894978 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:892994..894978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G03230.1 vs.
Match: EWM27066.1 (glutamate ammonia ligase [Nannochloropsis gaditana])

HSP 1 Score: 677.6 bits (1747), Expect = 2.200e-191
Identity = 312/333 (93.69%), Postives = 326/333 (97.90%), Query Frame = 0 
Query:    1 MSNSLFSQHTRLSEEVFARFMSLPQGDAYQAEYIWIGGSGQDLRCKTRTLYKVTSNPDDLPIWNFDGSSTGQAPGDDSEVLLKPQAIFPDPFRGGKNILVMCDCYKPDMTPIKNNSRVRCAEAMKKVESLVPWFGIEQEYTLFEADGVTPFGWPKGGFPGAQGPYYCSIGTENAYGRHIAEAHYRACLYANIQISGINGEVLPGQWEYQVGPSVGIASGDQMWVSRYILQRVCEAFGVIVSLDPKPIPGDWNGSGCHTNFSTEPMRQPGGFTVIIDALEKLRARHAEHIAAYGEGNERRLTGKHETASMDSFSYGVANRGASCRIPRAAEKDG 334
            MSN+LFS HT+LSEEVFARFM+LPQG+AYQAEYIWIGG+GQDLRCKTRTLYK T+NPDDLP+WNFDGSSTGQAPGDDSEVLLKPQAIFPDPFRGG NILVMCDCYKPDMTPIK N+R+RCAEAMKKVESLVPWFGIEQEYTLFEADGVTPFGWPKGGFPGAQGPYYCS+GTENA+GRHIAEAHYRACL+A I ISGINGEVLPGQWEYQVGPSVGI SGDQMWVSRYILQRVCEAFGVIVSLDPKPIPGDWNGSGCHTNFSTEPMR+PGGFT+IIDALEKLRARHAEHIAAYGEGNERRLTGKHETASMDSFSYGVANRGASCRIPRAAEKDG
Sbjct:    1 MSNTLFSMHTQLSEEVFARFMALPQGEAYQAEYIWIGGTGQDLRCKTRTLYKKTNNPDDLPVWNFDGSSTGQAPGDDSEVLLKPQAIFPDPFRGGDNILVMCDCYKPDMTPIKGNTRLRCAEAMKKVESLVPWFGIEQEYTLFEADGVTPFGWPKGGFPGAQGPYYCSVGTENAFGRHIAEAHYRACLFAKINISGINGEVLPGQWEYQVGPSVGIESGDQMWVSRYILQRVCEAFGVIVSLDPKPIPGDWNGSGCHTNFSTEPMRKPGGFTIIIDALEKLRARHAEHIAAYGEGNERRLTGKHETASMDSFSYGVANRGASCRIPRAAEKDG 333
The following BLAST results are available for this feature:
BLAST of NO07G03230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27066.12.200e-19193.69glutamate ammonia ligase [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03230NO07G03230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03230.1NO07G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03230.1.cds1NO07G03230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03230.1.cds2NO07G03230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03230.1.cds3NO07G03230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03230.1.cds4NO07G03230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03230.1.cds5NO07G03230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03230.1 ID=NO07G03230.1|Name=NO07G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
ATGTCCAACTCGCTCTTCAGTCAACACACCCGCTTGTCGGAGGAGGTGTT
TGCCCGCTTCATGTCCCTTCCTCAGGGGGATGCCTACCAAGCCGAGTACA
TCTGGATTGGTGGCTCTGGCCAAGACTTGCGCTGCAAGACCCGCACACTC
TATAAGGTCACGAGCAACCCCGATGACCTGCCCATTTGGAACTTCGACGG
CTCCTCCACCGGCCAAGCTCCCGGGGACGACTCCGAGGTACTCCTGAAGC
CCCAGGCAATTTTCCCCGACCCCTTCCGTGGCGGAAAGAACATCCTGGTC
ATGTGCGACTGCTACAAGCCCGACATGACCCCCATCAAGAACAACTCTCG
TGTCCGGTGCGCGGAGGCGATGAAGAAGGTTGAATCCCTCGTCCCCTGGT
TCGGCATCGAGCAAGAGTACACCCTGTTCGAGGCGGATGGCGTGACGCCC
TTCGGCTGGCCCAAGGGAGGTTTCCCCGGTGCCCAGGGCCCGTACTACTG
CTCCATCGGGACTGAGAACGCCTACGGCCGCCACATCGCCGAGGCTCACT
ACCGCGCCTGCCTCTATGCCAATATTCAGATCTCCGGGATCAACGGCGAG
GTGCTCCCGGGCCAGTGGGAGTATCAGGTGGGCCCCTCCGTCGGCATTGC
ATCAGGTGACCAGATGTGGGTCTCTCGTTACATCCTCCAGCGTGTCTGCG
AGGCCTTTGGCGTGATCGTATCTCTGGACCCCAAGCCCATCCCGGGTGAC
TGGAACGGATCGGGGTGCCATACCAACTTCTCAACCGAGCCCATGCGACA
ACCCGGGGGGTTCACCGTCATTATCGACGCCTTGGAGAAGCTCCGTGCCC
GCCACGCCGAGCACATTGCCGCCTACGGGGAGGGGAACGAGCGTCGTCTG
ACTGGAAAGCACGAGACGGCCAGCATGGACTCATTTTCCTATGGCGTGGC
CAACCGCGGGGCATCGTGCCGGATCCCCCGGGCGGCGGAGAAGGATGGGT
GCGGCTACTTCGAGGACAGGCGTCCGTCTTCCAACATGGACCCCTATGTC
GTCACGGGCATGCTTATTGAGACGTGCTGCTTGTAA
back to top

protein sequence of NO07G03230.1

>NO07G03230.1-protein ID=NO07G03230.1-protein|Name=NO07G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MSNSLFSQHTRLSEEVFARFMSLPQGDAYQAEYIWIGGSGQDLRCKTRTL
YKVTSNPDDLPIWNFDGSSTGQAPGDDSEVLLKPQAIFPDPFRGGKNILV
MCDCYKPDMTPIKNNSRVRCAEAMKKVESLVPWFGIEQEYTLFEADGVTP
FGWPKGGFPGAQGPYYCSIGTENAYGRHIAEAHYRACLYANIQISGINGE
VLPGQWEYQVGPSVGIASGDQMWVSRYILQRVCEAFGVIVSLDPKPIPGD
WNGSGCHTNFSTEPMRQPGGFTVIIDALEKLRARHAEHIAAYGEGNERRL
TGKHETASMDSFSYGVANRGASCRIPRAAEKDGCGYFEDRRPSSNMDPYV
VTGMLIETCCL*
back to top

mRNA from alignment at chr7:892994..894978+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03230.1 ID=NO07G03230.1|Name=NO07G03230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp|location=Sequence derived from alignment at chr7:892994..894978+ (Nannochloropsis oceanica)
ATGTCCAACTCGCTCTTCAGTCAACACACCCGCTTGTCGGAGGAGGTGTT
TGCCCGCTTCATGTCCCTTCCTCAGGGGGATGCCTACCAAGCCGAGTACA
TCTGTAAGTCCAAGAGAAGGGAGTGGACATCACCAGGCACGAGGCACGCA
AGAATTGCCGCGGAAGGGTGTAGGGCGCGGCACGCGCGGCGCGGCCCAGA
TATCTTCATCATTTTTTCAGTCTTGTCTTATACTCTCTCCTCTACTACAC
AGGGATTGGTGGCTCTGGCCAAGACTTGCGCTGCAAGACCCGCACACTCT
ATAAGGTCACGAGCAACCCCGATGACCTGTAAGTACTGATCTTGGGAGCG
AAATATCCCCCGCGGATGGATTTTTTATGGGCCTTTGTTTGGCAAGGTGC
CATTTTTGTATGCTTGTGTCAGTTGTTTAGCTTACATCTTAGTGTCATGC
ATTTGCGCTGTATCTTTGCATCAGCCGCAACATGTTGGTCTGTCGTGCGC
AAGGCCTACAACCGACCTCCGTGTTCCTCGGAGAGCAAACACATGATCTG
CTCCTTTTTCGATTCGCACCCCATTAGCCCTTTACTTGCCTTGTGCTGCT
GTCCTTCATGCCCCAGACAACCACCGTCCACACCCGTCATATTCATCCAC
TGCTCCCTCCTTTAACTCCCAACCCCCTTCAATACGCTCAAAATTTTATC
CGCCCACTTGTCCCGCTCACTTTTCCTCTCTGAACCCCTCCATAGGCCCA
TTTGGAACTTCGACGGCTCCTCCACCGGCCAAGCTCCCGGGGACGACTCC
GAGGTACTCCTGAAGCCCCAGGCAATTTTCCCCGACCCCTTCCGTGGCGG
AAAGAACATCCTGGTCATGTGCGACTGCTACAAGCCCGACATGACCCCCA
TCAAGAACAACTCTCGTGTCCGGTGCGCGGAGGCGATGAAGAAGGTTGAA
TCCCTCGTCCCCTGGTTCGGCATCGAGCAAGAGTACACCCTGTTCGAGGC
GGATGGCGTGACGCCCTTCGGCTGGCCCAAGGGAGGTTTCCCCGGTGCCC
AGGGTATGTCTAAAGGATCAGCGAGGAAGAAGGGAGACAGGGAGGGAAGG
CGGGAGGGGTTGTTGTGACCCTTGGCGCCGACTATCATCGACTCATCTTT
TCTCCCTTATACCACCTTTCCCTTATTTCCTCCTTCCCCACCAGGCCCGT
ACTACTGCTCCATCGGGACTGAGAACGCCTACGGCCGCCACATCGCCGAG
GCTCACTACCGCGCCTGCCTCTATGCCAATATTCAGATCTCCGGGATCAA
CGGCGAGGTGCTCCCGGGCCAGTGGGAGTATCAGGTGGGCCCCTCCGTCG
GCATTGCATCAGGTGACCAGATGTGGGTCTCTCGTTACATCCTCCAGCGT
GTCTGCGAGGCCTTTGGCGTGATCGTATCTCTGGACCCCAAGCCCATCCC
GGGTGACTGGAACGGATCGGGGTGCCATACCAACTTCTCAACCGAGCCCA
TGCGACAACCCGGGGGGTTCACCGTCATTATCGACGCCTTGGAGAAGCTC
CGTGCCCGCCACGCCGAGCACATTGCCGCCTACGGGGAGGGGAACGAGCG
TCGTCTGACTGGAAAGCACGAGACGGCCAGCATGGACTCATTTTCCTATG
GCGTGGCCAACCGCGGGGCATCGTGCCGGATCCCCCGGGCGGCGGAGAAG
GATGGGGTAGGTTTTACTCAAAAATTGGGACTATGGAGATAAGAAGAGAG
AGTATAGATATGTGGGCCTTGTTGTATGACTTTTTTTTGTCTTCTTTATC
GGATGGGTATGGCTACTTCTCTCCCTCATTTTTGCTCTTGAGATATCAGC
ATCTAATCCTCCCTTCCTTCCTCCCTCTTTCCCCGTACATCTTGACAGTG
CGGCTACTTCGAGGACAGGCGTCCGTCTTCCAACATGGACCCCTATGTCG
TCACGGGCATGCTTATTGAGACGTGCTGCTTGTAA
back to top

Coding sequence (CDS) from alignment at chr7:892994..894978+

>NO07G03230.1 ID=NO07G03230.1|Name=NO07G03230.1|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr7:892994..894978+ (Nannochloropsis oceanica)
ATGTCCAACTCGCTCTTCAGTCAACACACCCGCTTGTCGGAGGAGGTGTT
TGCCCGCTTCATGTCCCTTCCTCAGGGGGATGCCTACCAAGCCGAGTACA
TCTGGATTGGTGGCTCTGGCCAAGACTTGCGCTGCAAGACCCGCACACTC
TATAAGGTCACGAGCAACCCCGATGACCTGCCCATTTGGAACTTCGACGG
CTCCTCCACCGGCCAAGCTCCCGGGGACGACTCCGAGGTACTCCTGAAGC
CCCAGGCAATTTTCCCCGACCCCTTCCGTGGCGGAAAGAACATCCTGGTC
ATGTGCGACTGCTACAAGCCCGACATGACCCCCATCAAGAACAACTCTCG
TGTCCGGTGCGCGGAGGCGATGAAGAAGGTTGAATCCCTCGTCCCCTGGT
TCGGCATCGAGCAAGAGTACACCCTGTTCGAGGCGGATGGCGTGACGCCC
TTCGGCTGGCCCAAGGGAGGTTTCCCCGGTGCCCAGGGCCCGTACTACTG
CTCCATCGGGACTGAGAACGCCTACGGCCGCCACATCGCCGAGGCTCACT
ACCGCGCCTGCCTCTATGCCAATATTCAGATCTCCGGGATCAACGGCGAG
GTGCTCCCGGGCCAGTGGGAGTATCAGGTGGGCCCCTCCGTCGGCATTGC
ATCAGGTGACCAGATGTGGGTCTCTCGTTACATCCTCCAGCGTGTCTGCG
AGGCCTTTGGCGTGATCGTATCTCTGGACCCCAAGCCCATCCCGGGTGAC
TGGAACGGATCGGGGTGCCATACCAACTTCTCAACCGAGCCCATGCGACA
ACCCGGGGGGTTCACCGTCATTATCGACGCCTTGGAGAAGCTCCGTGCCC
GCCACGCCGAGCACATTGCCGCCTACGGGGAGGGGAACGAGCGTCGTCTG
ACTGGAAAGCACGAGACGGCCAGCATGGACTCATTTTCCTATGGCGTGGC
CAACCGCGGGGCATCGTGCCGGATCCCCCGGGCGGCGGAGAAGGATGGGT
GCGGCTACTTCGAGGACAGGCGTCCGTCTTCCAACATGGACCCCTATGTC
GTCACGGGCATGCTTATTGAGACGTGCTGCTTGTAA
back to top
Synonyms
Publications