NO07G02820.1, NO07G02820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02820.1
Unique NameNO07G02820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1080
Alignment locationchr7:800864..801943 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:800864..801943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02820.1 vs.
Match: XP_014192170.1 (PREDICTED: transcription initiation factor TFIID subunit 1-like isoform X1 [Haplochromis burtoni])

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-7
Identity = 113/354 (31.92%), Postives = 150/354 (42.37%), Query Frame = 0 
Query:   19 FYQRQPAPEKHHQLGTRNYYYHHPKLDYRHHPKPDYHPKPDFHHRPDLNH---YPQHHQHQPDHHHRLGRQHQPDHHHPKPDYHHPRPDYHHRPDLNHYPQHYQHQPDYHHRLGRQHQPDYHHPKPDYHHPKPDFHHRPDLNHYPQHYQHQPDYHHPKLDYHHYPKPDYHRCPDLNHYPQHYQHQPDHHHRLGRQHQPDHHHPKLDYHHYPKPDYHRCPDLNHYPQHYQHQPDYHHRLGCQHQPDHHHPKLDYHHYPKPDYHRCPDLNHYPQHHQHQPDH------HHRLGRQHQPDHHHPKLDYHHYPKPDYHRCPDLNHYPQHYQHQPDYH----HRLGRQHQPDHHHPKLD 360
            ++   P+P  HH+      Y H     + +H K D+H     H+R    H   Y   H H   HHH  G+ +   HHH     HH   D  H    +H   H    PD+HH     H PD+ H   D+H   PD HH    +H   H+ H  D H P  D+HH+ K +               H PDHHH  G  H+PDHHH                    H+  H  H  D+HH  G  H+P+HHH   D H+ P+  +H     +H+   HQH  DH      HH  G +H  DHHH     HH+   D+HR    +H P+H+    D+H    H     H  DHHH  +D
Sbjct:  238 YHGNSPSPHHHHRKDHSPVYPHGDSHSHTYHNK-DHHSASHHHYRGQHRHREPYSPSHHHSNAHHHHHGKHYGHVHHH-----HHHHVD--HTSQGHHQGDH--DSPDHHHHHKDHHSPDHQHHHRDHH--SPDHHHHHQEDHSQGHHHHHGDNHSP--DHHHHHKDN---------------HSPDHHHHHGDHHKPDHHH--------------------HHGDH--HSQDHHHHHGGHHRPNHHHHHGD-HNSPEHQHHHG---DHHSPVHQHHGDHRNLGHPHHHHGDRHSQDHHHHHHRDHHF--SDHHRHHGDHHSPEHHYRHRDHHILNIHHQHDHHSLDHHHDDVD 534
The following BLAST results are available for this feature:
BLAST of NO07G02820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_014192170.11.400e-731.92PREDICTED: transcription initiation factor TFIID s... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02820NO07G02820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02820.1NO07G02820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02820.1.cds1NO07G02820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02820.1 ID=NO07G02820.1|Name=NO07G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp
ATGCGCCACCGCCGCCACCAGATTGTGAGGGTGCACCAGCCTGAGAATTG
GGAGTTTTACCAGCGACAGCCTGCGCCTGAGAAACACCATCAGCTTGGGA
CACGGAACTACTACTATCACCACCCCAAGCTTGATTACCGCCACCACCCC
AAGCCTGATTACCACCCCAAGCCTGATTTCCACCACCGCCCTGATTTAAA
CCACTACCCGCAGCACCACCAGCACCAGCCTGACCATCACCACCGGCTTG
GTCGCCAGCACCAGCCTGACCACCACCACCCCAAGCCTGATTACCACCAC
CCCAGGCCTGATTACCACCACCGCCCTGATTTAAACCACTACCCGCAGCA
CTACCAGCACCAGCCTGACTACCACCACCGGCTTGGTCGCCAGCACCAGC
CTGACTACCACCACCCCAAGCCTGATTACCACCACCCCAAGCCTGATTTC
CACCACCGCCCTGATTTAAACCACTACCCGCAGCACTACCAGCACCAGCC
TGACTACCACCACCCCAAGCTTGATTACCACCACTACCCCAAGCCTGATT
ACCACCGCTGCCCTGATTTAAACCACTACCCGCAGCACTACCAGCACCAG
CCTGACCACCACCACCGGCTTGGTCGCCAGCACCAGCCTGACCACCACCA
CCCCAAGCTTGATTACCACCACTACCCCAAGCCTGATTACCACCGCTGCC
CTGATTTAAACCACTACCCGCAGCACTACCAGCACCAGCCTGACTACCAC
CACCGGCTTGGTTGCCAGCACCAGCCTGACCACCACCACCCCAAGCTTGA
TTACCACCACTACCCCAAGCCTGATTACCACCGCTGCCCTGATTTAAACC
ACTACCCGCAGCACCACCAGCACCAGCCTGACCACCACCACCGGCTTGGT
CGCCAGCACCAGCCTGACCACCACCACCCCAAGCTTGATTACCACCACTA
CCCCAAGCCTGATTACCACCGCTGCCCTGATTTAAACCACTACCCGCAGC
ACTACCAGCACCAGCCTGACTACCACCACCGGCTTGGTCGCCAGCACCAG
CCTGACCACCACCACCCCAAGCTTGATTAG
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protein sequence of NO07G02820.1

>NO07G02820.1-protein ID=NO07G02820.1-protein|Name=NO07G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MRHRRHQIVRVHQPENWEFYQRQPAPEKHHQLGTRNYYYHHPKLDYRHHP
KPDYHPKPDFHHRPDLNHYPQHHQHQPDHHHRLGRQHQPDHHHPKPDYHH
PRPDYHHRPDLNHYPQHYQHQPDYHHRLGRQHQPDYHHPKPDYHHPKPDF
HHRPDLNHYPQHYQHQPDYHHPKLDYHHYPKPDYHRCPDLNHYPQHYQHQ
PDHHHRLGRQHQPDHHHPKLDYHHYPKPDYHRCPDLNHYPQHYQHQPDYH
HRLGCQHQPDHHHPKLDYHHYPKPDYHRCPDLNHYPQHHQHQPDHHHRLG
RQHQPDHHHPKLDYHHYPKPDYHRCPDLNHYPQHYQHQPDYHHRLGRQHQ
PDHHHPKLD*
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mRNA from alignment at chr7:800864..801943+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02820.1 ID=NO07G02820.1|Name=NO07G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp|location=Sequence derived from alignment at chr7:800864..801943+ (Nannochloropsis oceanica)
ATGCGCCACCGCCGCCACCAGATTGTGAGGGTGCACCAGCCTGAGAATTG
GGAGTTTTACCAGCGACAGCCTGCGCCTGAGAAACACCATCAGCTTGGGA
CACGGAACTACTACTATCACCACCCCAAGCTTGATTACCGCCACCACCCC
AAGCCTGATTACCACCCCAAGCCTGATTTCCACCACCGCCCTGATTTAAA
CCACTACCCGCAGCACCACCAGCACCAGCCTGACCATCACCACCGGCTTG
GTCGCCAGCACCAGCCTGACCACCACCACCCCAAGCCTGATTACCACCAC
CCCAGGCCTGATTACCACCACCGCCCTGATTTAAACCACTACCCGCAGCA
CTACCAGCACCAGCCTGACTACCACCACCGGCTTGGTCGCCAGCACCAGC
CTGACTACCACCACCCCAAGCCTGATTACCACCACCCCAAGCCTGATTTC
CACCACCGCCCTGATTTAAACCACTACCCGCAGCACTACCAGCACCAGCC
TGACTACCACCACCCCAAGCTTGATTACCACCACTACCCCAAGCCTGATT
ACCACCGCTGCCCTGATTTAAACCACTACCCGCAGCACTACCAGCACCAG
CCTGACCACCACCACCGGCTTGGTCGCCAGCACCAGCCTGACCACCACCA
CCCCAAGCTTGATTACCACCACTACCCCAAGCCTGATTACCACCGCTGCC
CTGATTTAAACCACTACCCGCAGCACTACCAGCACCAGCCTGACTACCAC
CACCGGCTTGGTTGCCAGCACCAGCCTGACCACCACCACCCCAAGCTTGA
TTACCACCACTACCCCAAGCCTGATTACCACCGCTGCCCTGATTTAAACC
ACTACCCGCAGCACCACCAGCACCAGCCTGACCACCACCACCGGCTTGGT
CGCCAGCACCAGCCTGACCACCACCACCCCAAGCTTGATTACCACCACTA
CCCCAAGCCTGATTACCACCGCTGCCCTGATTTAAACCACTACCCGCAGC
ACTACCAGCACCAGCCTGACTACCACCACCGGCTTGGTCGCCAGCACCAG
CCTGACCACCACCACCCCAAGCTTGATTAG
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Coding sequence (CDS) from alignment at chr7:800864..801943+

>NO07G02820.1 ID=NO07G02820.1|Name=NO07G02820.1|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr7:800864..801943+ (Nannochloropsis oceanica)
ATGCGCCACCGCCGCCACCAGATTGTGAGGGTGCACCAGCCTGAGAATTG
GGAGTTTTACCAGCGACAGCCTGCGCCTGAGAAACACCATCAGCTTGGGA
CACGGAACTACTACTATCACCACCCCAAGCTTGATTACCGCCACCACCCC
AAGCCTGATTACCACCCCAAGCCTGATTTCCACCACCGCCCTGATTTAAA
CCACTACCCGCAGCACCACCAGCACCAGCCTGACCATCACCACCGGCTTG
GTCGCCAGCACCAGCCTGACCACCACCACCCCAAGCCTGATTACCACCAC
CCCAGGCCTGATTACCACCACCGCCCTGATTTAAACCACTACCCGCAGCA
CTACCAGCACCAGCCTGACTACCACCACCGGCTTGGTCGCCAGCACCAGC
CTGACTACCACCACCCCAAGCCTGATTACCACCACCCCAAGCCTGATTTC
CACCACCGCCCTGATTTAAACCACTACCCGCAGCACTACCAGCACCAGCC
TGACTACCACCACCCCAAGCTTGATTACCACCACTACCCCAAGCCTGATT
ACCACCGCTGCCCTGATTTAAACCACTACCCGCAGCACTACCAGCACCAG
CCTGACCACCACCACCGGCTTGGTCGCCAGCACCAGCCTGACCACCACCA
CCCCAAGCTTGATTACCACCACTACCCCAAGCCTGATTACCACCGCTGCC
CTGATTTAAACCACTACCCGCAGCACTACCAGCACCAGCCTGACTACCAC
CACCGGCTTGGTTGCCAGCACCAGCCTGACCACCACCACCCCAAGCTTGA
TTACCACCACTACCCCAAGCCTGATTACCACCGCTGCCCTGATTTAAACC
ACTACCCGCAGCACCACCAGCACCAGCCTGACCACCACCACCGGCTTGGT
CGCCAGCACCAGCCTGACCACCACCACCCCAAGCTTGATTACCACCACTA
CCCCAAGCCTGATTACCACCGCTGCCCTGATTTAAACCACTACCCGCAGC
ACTACCAGCACCAGCCTGACTACCACCACCGGCTTGGTCGCCAGCACCAG
CCTGACCACCACCACCCCAAGCTTGATTAG
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Synonyms
Publications